Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 SNORD116.2-201ENST00000391251 93 ntBASIC-3.42□□□□□ -2.96
HMGB1P09429 RNU6-912P-201ENST00000363800 104 ntBASIC-3.43□□□□□ -2.96
HMGB1P09429 Y_RNA.513-201ENST00000384522 100 ntBASIC-3.43□□□□□ -2.96
HMGB1P09429 RNU6-70P-201ENST00000516438 60 ntBASIC-3.43□□□□□ -2.96
HMGB1P09429 SNORD60.1-201ENST00000362451 73 ntBASIC-3.44□□□□□ -2.96
HMGB1P09429 SMAD5-AS1_3.1-201ENST00000614187 124 ntBASIC-3.45□□□□□ -2.96
HMGB1P09429 SNX3P1Y-201ENST00000615757 176 ntBASIC-3.45□□□□□ -2.96
HMGB1P09429 RNU6-1296P-201ENST00000383879 107 ntBASIC-3.46□□□□□ -2.96
HMGB1P09429 SNORD45.2-201ENST00000363552 72 ntBASIC-3.47□□□□□ -2.96
HMGB1P09429 RNU7-171P-201ENST00000459581 62 ntBASIC-3.47□□□□□ -2.96
HMGB1P09429 MIR4426-201ENST00000640330 63 ntBASIC-3.47□□□□□ -2.96
HMGB1P09429 MIRLET7A2-201ENST00000362105 72 ntBASIC-3.48□□□□□ -2.97
HMGB1P09429 Y_RNA.129-201ENST00000363392 110 ntBASIC-3.48□□□□□ -2.97
HMGB1P09429 SNORA40B-201ENST00000385573 128 ntBASIC-3.48□□□□□ -2.97
HMGB1P09429 MIR548AJ2-201ENST00000408539 92 ntBASIC-3.48□□□□□ -2.97
HMGB1P09429 RNU6-1191P-201ENST00000516799 107 ntBASIC-3.48□□□□□ -2.97
HMGB1P09429 Y_RNA.204-201ENST00000364112 102 ntBASIC-3.49□□□□□ -2.97
HMGB1P09429 RNU6-68P-201ENST00000516576 104 ntBASIC-3.49□□□□□ -2.97
HMGB1P09429 MIR4712-201ENST00000583750 82 ntBASIC-3.49□□□□□ -2.97
HMGB1P09429 MIR1245B-201ENST00000636115 69 ntBASIC-3.49□□□□□ -2.97
HMGB1P09429 RNU6-242P-201ENST00000384359 107 ntBASIC-3.51□□□□□ -2.97
HMGB1P09429 RNY4-201ENST00000516507 96 ntBASIC-3.51□□□□□ -2.97
HMGB1P09429 RNU6-300P-201ENST00000459080 104 ntBASIC-3.52□□□□□ -2.97
HMGB1P09429 RNU6-176P-201ENST00000517196 105 ntBASIC-3.52□□□□□ -2.97
HMGB1P09429 RNU6-590P-201ENST00000365039 107 ntBASIC-3.53□□□□□ -2.97
HMGB1P09429 MIR494-201ENST00000349529 81 ntBASIC-3.54□□□□□ -2.98
HMGB1P09429 Y_RNA.186-201ENST00000363899 92 ntBASIC-3.54□□□□□ -2.98
HMGB1P09429 RNU6-1047P-201ENST00000364418 107 ntBASIC-3.54□□□□□ -2.98
HMGB1P09429 Y_RNA.443-201ENST00000384135 111 ntBASIC-3.55□□□□□ -2.98
HMGB1P09429 AL451105.1-201ENST00000450005 189 ntBASIC-3.55□□□□□ -2.98
HMGB1P09429 RNU6-406P-201ENST00000516470 107 ntBASIC-3.55□□□□□ -2.98
HMGB1P09429 RNU6-230P-201ENST00000362457 104 ntBASIC-3.58□□□□□ -2.98
HMGB1P09429 SNORA40.16-201ENST00000517238 121 ntBASIC-3.58□□□□□ -2.98
HMGB1P09429 Y_RNA.434-201ENST00000384090 100 ntBASIC-3.61□□□□□ -2.99
HMGB1P09429 MIR1254-1-201ENST00000408257 97 ntBASIC-3.61□□□□□ -2.99
HMGB1P09429 Y_RNA.59-201ENST00000362828 102 ntBASIC-3.62□□□□□ -2.99
HMGB1P09429 Y_RNA.320-201ENST00000365144 102 ntBASIC-3.62□□□□□ -2.99
HMGB1P09429 Y_RNA.397-201ENST00000383950 98 ntBASIC-3.62□□□□□ -2.99
HMGB1P09429 RNU7-119P-201ENST00000459279 63 ntBASIC-3.62□□□□□ -2.99
HMGB1P09429 RNU6-687P-201ENST00000516443 89 ntBASIC-3.62□□□□□ -2.99
HMGB1P09429 RNU6-122P-201ENST00000516818 107 ntBASIC-3.63□□□□□ -2.99
HMGB1P09429 MIR450A2-201ENST00000385022 100 ntBASIC-3.64□□□□□ -2.99
HMGB1P09429 MIR3134-201ENST00000579433 74 ntBASIC-3.64□□□□□ -2.99
HMGB1P09429 Y_RNA.788-201ENST00000622394 112 ntBASIC-3.64□□□□□ -2.99
HMGB1P09429 RNU6-1276P-201ENST00000365372 104 ntBASIC-3.65□□□□□ -2.99
HMGB1P09429 SNORA25.5-201ENST00000363782 126 ntBASIC-3.67□□□□□ -3
HMGB1P09429 RNU6-345P-201ENST00000517001 107 ntBASIC-3.67□□□□□ -3
HMGB1P09429 Y_RNA.94-201ENST00000363068 106 ntBASIC-3.7□□□□□ -3
HMGB1P09429 RNU6-294P-201ENST00000364999 102 ntBASIC-3.7□□□□□ -3
HMGB1P09429 RNU6-1015P-201ENST00000517121 99 ntBASIC-3.7□□□□□ -3
HMGB1P09429 MIAT_exon5_2.1-201ENST00000613562 85 ntBASIC-3.7□□□□□ -3
HMGB1P09429 RNU6-1079P-201ENST00000362861 110 ntBASIC-3.71□□□□□ -3
HMGB1P09429 Y_RNA.694-201ENST00000516677 117 ntBASIC-3.72□□□□□ -3
HMGB1P09429 RNU6-1124P-201ENST00000384169 107 ntBASIC-3.73□□□□□ -3.01
HMGB1P09429 RNU6-153P-201ENST00000364422 104 ntBASIC-3.74□□□□□ -3.01
HMGB1P09429 RNU6-411P-201ENST00000384451 107 ntBASIC-3.74□□□□□ -3.01
HMGB1P09429 AL731768.1-201ENST00000603124 139 ntBASIC-3.74□□□□□ -3.01
HMGB1P09429 RNU6ATAC17P-201ENST00000516074 71 ntBASIC-3.75□□□□□ -3.01
HMGB1P09429 TRGJP-201ENST00000390338 61 ntAPPRIS P1 BASIC-3.76□□□□□ -3.01
HMGB1P09429 MIR4666B-201ENST00000578142 81 ntBASIC-3.76□□□□□ -3.01
HMGB1P09429 RNU6-742P-201ENST00000365289 107 ntBASIC-3.77□□□□□ -3.01
HMGB1P09429 RNU6-419P-201ENST00000517030 63 ntBASIC-3.77□□□□□ -3.01
HMGB1P09429 U2.22-201ENST00000636441 106 ntBASIC-3.77□□□□□ -3.01
HMGB1P09429 RNU6-663P-201ENST00000391105 106 ntBASIC-3.78□□□□□ -3.01
HMGB1P09429 AL078612.1-201ENST00000533009 150 ntTSL 5 BASIC-3.78□□□□□ -3.01
HMGB1P09429 Y_RNA.63-201ENST00000362841 102 ntBASIC-3.79□□□□□ -3.02
HMGB1P09429 RNU6-1277P-201ENST00000364561 107 ntBASIC-3.79□□□□□ -3.02
HMGB1P09429 RNY4P25-201ENST00000459254 96 ntBASIC-3.79□□□□□ -3.02
HMGB1P09429 RNU6-822P-201ENST00000362707 106 ntBASIC-3.81□□□□□ -3.02
HMGB1P09429 RNU6-800P-201ENST00000384473 103 ntBASIC-3.81□□□□□ -3.02
HMGB1P09429 SNORA25.4-201ENST00000363666 124 ntBASIC-3.82□□□□□ -3.02
HMGB1P09429 Y_RNA.658-201ENST00000515990 97 ntBASIC-3.82□□□□□ -3.02
HMGB1P09429 RNU6-634P-201ENST00000459134 106 ntBASIC-3.83□□□□□ -3.02
HMGB1P09429 MIR5693-201ENST00000577722 73 ntBASIC-3.83□□□□□ -3.02
HMGB1P09429 RNU6-940P-201ENST00000363433 104 ntBASIC-3.85□□□□□ -3.03
HMGB1P09429 RNU6-1169P-201ENST00000363537 103 ntBASIC-3.85□□□□□ -3.03
HMGB1P09429 RNU6-803P-201ENST00000516034 102 ntBASIC-3.88□□□□□ -3.03
HMGB1P09429 MIRLET7A3-201ENST00000362116 74 ntBASIC-3.89□□□□□ -3.03
HMGB1P09429 RNU6-820P-201ENST00000384273 107 ntBASIC-3.9□□□□□ -3.03
HMGB1P09429 MIR3938-201ENST00000582157 103 ntBASIC-3.9□□□□□ -3.03
HMGB1P09429 U7.4-201ENST00000614961 63 ntBASIC-3.9□□□□□ -3.03
HMGB1P09429 hsa-mir-550a-2.1-201ENST00000637473 97 ntBASIC-3.9□□□□□ -3.03
HMGB1P09429 SNORD30.1-201ENST00000391309 70 ntBASIC-3.93□□□□□ -3.04
HMGB1P09429 MIR5582-201ENST00000579697 68 ntBASIC-3.93□□□□□ -3.04
HMGB1P09429 Y_RNA.830-201ENST00000628531 96 ntBASIC-3.93□□□□□ -3.04
HMGB1P09429 Y_RNA.612-201ENST00000410717 95 ntBASIC-3.94□□□□□ -3.04
HMGB1P09429 AC062037.1-201ENST00000605302 128 ntBASIC-3.94□□□□□ -3.04
HMGB1P09429 Y_RNA.43-201ENST00000362670 111 ntBASIC-3.95□□□□□ -3.04
HMGB1P09429 Y_RNA.566-201ENST00000384735 101 ntBASIC-3.95□□□□□ -3.04
HMGB1P09429 MIR4511-201ENST00000582784 87 ntBASIC-3.95□□□□□ -3.04
HMGB1P09429 Y_RNA.382-201ENST00000365672 114 ntBASIC-3.96□□□□□ -3.04
HMGB1P09429 RNU6-787P-201ENST00000384032 107 ntBASIC-3.96□□□□□ -3.04
HMGB1P09429 RNU6-1121P-201ENST00000516802 109 ntBASIC-3.96□□□□□ -3.04
HMGB1P09429 AC103706.3-201ENST00000636297 85 ntBASIC-3.97□□□□□ -3.04
HMGB1P09429 Y_RNA.369-201ENST00000365568 117 ntBASIC-3.99□□□□□ -3.05
HMGB1P09429 AC139453.2-201ENST00000487255 133 ntBASIC-3.99□□□□□ -3.05
HMGB1P09429 Y_RNA.79-201ENST00000362992 113 ntBASIC-4.01□□□□□ -3.05
HMGB1P09429 Y_RNA.266-201ENST00000364678 96 ntBASIC-4.01□□□□□ -3.05
HMGB1P09429 Y_RNA.545-201ENST00000384652 105 ntBASIC-4.01□□□□□ -3.05
HMGB1P09429 AL359920.1-201ENST00000618332 176 ntBASIC-4.02□□□□□ -3.05
Retrieved 100 of 98,524 protein–RNA pairs in 13.9 ms