Protein–RNA interactions for Protein: Q9UBD9

CLCF1, Cardiotrophin-like cytokine factor 1, humanhuman

Predictions only

Length 225 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLCF1Q9UBD9 RNY3P8-201ENST00000411366 126 ntBASIC-1.83□□□□□ -2.7
CLCF1Q9UBD9 Y_RNA.788-201ENST00000622394 112 ntBASIC-1.83□□□□□ -2.7
CLCF1Q9UBD9 MIR494-201ENST00000349529 81 ntBASIC-1.84□□□□□ -2.7
CLCF1Q9UBD9 MIR365A-201ENST00000362260 87 ntBASIC-1.84□□□□□ -2.7
CLCF1Q9UBD9 AC108019.1-201ENST00000512540 175 ntBASIC-1.84□□□□□ -2.7
CLCF1Q9UBD9 ST7-OT3_1.1-201ENST00000619607 74 ntBASIC-1.84□□□□□ -2.7
CLCF1Q9UBD9 Y_RNA.181-201ENST00000363872 101 ntBASIC-1.85□□□□□ -2.71
CLCF1Q9UBD9 RNU6-1276P-201ENST00000365372 104 ntBASIC-1.85□□□□□ -2.71
CLCF1Q9UBD9 MIR1285-2-201ENST00000408311 88 ntBASIC-1.85□□□□□ -2.71
CLCF1Q9UBD9 RNU6-542P-201ENST00000516405 103 ntBASIC-1.85□□□□□ -2.71
CLCF1Q9UBD9 Y_RNA.694-201ENST00000516677 117 ntBASIC-1.85□□□□□ -2.71
CLCF1Q9UBD9 Y_RNA.94-201ENST00000363068 106 ntBASIC-1.86□□□□□ -2.71
CLCF1Q9UBD9 SNORD115-31-201ENST00000365318 82 ntBASIC-1.86□□□□□ -2.71
CLCF1Q9UBD9 Y_RNA.449-201ENST00000384187 102 ntBASIC-1.86□□□□□ -2.71
CLCF1Q9UBD9 Y_RNA.223-201ENST00000364290 113 ntBASIC-1.87□□□□□ -2.71
CLCF1Q9UBD9 Y_RNA.413-201ENST00000384007 102 ntBASIC-1.87□□□□□ -2.71
CLCF1Q9UBD9 Y_RNA.754-201ENST00000476024 102 ntBASIC-1.87□□□□□ -2.71
CLCF1Q9UBD9 MIR4666B-201ENST00000578142 81 ntBASIC-1.87□□□□□ -2.71
CLCF1Q9UBD9 Y_RNA.790-201ENST00000614282 102 ntBASIC-1.87□□□□□ -2.71
CLCF1Q9UBD9 Y_RNA.782-201ENST00000614695 102 ntBASIC-1.87□□□□□ -2.71
CLCF1Q9UBD9 RNU6-153P-201ENST00000364422 104 ntBASIC-1.88□□□□□ -2.71
CLCF1Q9UBD9 RNU6-983P-201ENST00000516004 103 ntBASIC-1.88□□□□□ -2.71
CLCF1Q9UBD9 RNU6ATAC17P-201ENST00000516074 71 ntBASIC-1.88□□□□□ -2.71
CLCF1Q9UBD9 MIR3134-201ENST00000579433 74 ntBASIC-1.88□□□□□ -2.71
CLCF1Q9UBD9 RNU6-294P-201ENST00000364999 102 ntBASIC-1.89□□□□□ -2.71
CLCF1Q9UBD9 Y_RNA.502-201ENST00000384478 113 ntBASIC-1.89□□□□□ -2.71
CLCF1Q9UBD9 SNORA27.2-201ENST00000363365 126 ntBASIC-1.9□□□□□ -2.71
CLCF1Q9UBD9 SNORD114-3-201ENST00000364969 75 ntBASIC-1.9□□□□□ -2.71
CLCF1Q9UBD9 RNU6-687P-201ENST00000516443 89 ntBASIC-1.9□□□□□ -2.71
CLCF1Q9UBD9 RNU6-92P-201ENST00000605893 104 ntBASIC-1.9□□□□□ -2.71
CLCF1Q9UBD9 Y_RNA.781-201ENST00000620301 103 ntBASIC-1.9□□□□□ -2.71
CLCF1Q9UBD9 TRAJ9-201ENST00000390528 61 ntAPPRIS P1 BASIC-1.91□□□□□ -2.72
CLCF1Q9UBD9 RNU6-523P-201ENST00000516304 54 ntBASIC-1.91□□□□□ -2.72
CLCF1Q9UBD9 MIR4441-201ENST00000582623 100 ntBASIC-1.91□□□□□ -2.72
CLCF1Q9UBD9 MIR548AM-201ENST00000584298 74 ntBASIC-1.91□□□□□ -2.72
CLCF1Q9UBD9 Y_RNA.139-201ENST00000363464 102 ntBASIC-1.92□□□□□ -2.72
CLCF1Q9UBD9 RNU6-411P-201ENST00000384451 107 ntBASIC-1.92□□□□□ -2.72
CLCF1Q9UBD9 AL078612.1-201ENST00000533009 150 ntTSL 5 BASIC-1.92□□□□□ -2.72
CLCF1Q9UBD9 RNU6-820P-201ENST00000384273 107 ntBASIC-1.93□□□□□ -2.72
CLCF1Q9UBD9 MIR125B1-201ENST00000385236 88 ntBASIC-1.93□□□□□ -2.72
CLCF1Q9UBD9 RNU6-841P-201ENST00000383872 107 ntBASIC-1.94□□□□□ -2.72
CLCF1Q9UBD9 RNU4-88P-201ENST00000411220 86 ntBASIC-1.94□□□□□ -2.72
CLCF1Q9UBD9 Y_RNA.321-201ENST00000365149 102 ntBASIC-1.95□□□□□ -2.72
CLCF1Q9UBD9 RNU6-1034P-201ENST00000365335 101 ntBASIC-1.95□□□□□ -2.72
CLCF1Q9UBD9 Y_RNA.543-201ENST00000384649 107 ntBASIC-1.95□□□□□ -2.72
CLCF1Q9UBD9 U4.2-201ENST00000618561 85 ntBASIC-1.95□□□□□ -2.72
CLCF1Q9UBD9 U2.22-201ENST00000636441 106 ntBASIC-1.95□□□□□ -2.72
CLCF1Q9UBD9 U7.4-201ENST00000614961 63 ntBASIC-1.96□□□□□ -2.72
CLCF1Q9UBD9 MIR581-201ENST00000384895 96 ntBASIC-1.97□□□□□ -2.72
CLCF1Q9UBD9 snoU13.10-201ENST00000459301 103 ntBASIC-1.97□□□□□ -2.72
CLCF1Q9UBD9 RNU6ATAC32P-201ENST00000516026 76 ntBASIC-1.97□□□□□ -2.72
CLCF1Q9UBD9 RNU6-980P-201ENST00000516925 103 ntBASIC-1.97□□□□□ -2.72
CLCF1Q9UBD9 RNU6-810P-201ENST00000364001 107 ntBASIC-1.98□□□□□ -2.73
CLCF1Q9UBD9 RNU7-160P-201ENST00000516660 62 ntBASIC-1.98□□□□□ -2.73
CLCF1Q9UBD9 MIR548W-201ENST00000581970 74 ntBASIC-1.98□□□□□ -2.73
CLCF1Q9UBD9 Y_RNA.284-201ENST00000364806 102 ntBASIC-1.99□□□□□ -2.73
CLCF1Q9UBD9 Y_RNA.369-201ENST00000365568 117 ntBASIC-1.99□□□□□ -2.73
CLCF1Q9UBD9 LINC01984-201ENST00000583863 301 ntTSL 3 BASIC-1.99□□□□□ -2.73
CLCF1Q9UBD9 SNORD19B.1-201ENST00000630615 80 ntBASIC-1.99□□□□□ -2.73
CLCF1Q9UBD9 Y_RNA.69-201ENST00000362885 109 ntBASIC-2□□□□□ -2.73
CLCF1Q9UBD9 RNU6-787P-201ENST00000384032 107 ntBASIC-2□□□□□ -2.73
CLCF1Q9UBD9 MIR1207-201ENST00000408249 87 ntBASIC-2□□□□□ -2.73
CLCF1Q9UBD9 RNU6-1015P-201ENST00000517121 99 ntBASIC-2□□□□□ -2.73
CLCF1Q9UBD9 hsa-mir-4773-1.1-201ENST00000585225 78 ntBASIC-2□□□□□ -2.73
CLCF1Q9UBD9 MIR664B-201ENST00000626756 61 ntBASIC-2□□□□□ -2.73
CLCF1Q9UBD9 MIR202-201ENST00000362219 110 ntBASIC-2.01□□□□□ -2.73
CLCF1Q9UBD9 SNORD60.1-201ENST00000362451 73 ntBASIC-2.01□□□□□ -2.73
CLCF1Q9UBD9 Y_RNA.211-201ENST00000364164 101 ntBASIC-2.01□□□□□ -2.73
CLCF1Q9UBD9 MIR5582-201ENST00000579697 68 ntBASIC-2.01□□□□□ -2.73
CLCF1Q9UBD9 MIR7110-201ENST00000612638 86 ntBASIC-2.01□□□□□ -2.73
CLCF1Q9UBD9 Y_RNA.443-201ENST00000384135 111 ntBASIC-2.02□□□□□ -2.73
CLCF1Q9UBD9 RNU6-520P-201ENST00000384717 104 ntBASIC-2.02□□□□□ -2.73
CLCF1Q9UBD9 SNORD116.2-201ENST00000391251 93 ntBASIC-2.02□□□□□ -2.73
CLCF1Q9UBD9 RNU6-634P-201ENST00000459134 106 ntBASIC-2.02□□□□□ -2.73
CLCF1Q9UBD9 RNU6-649P-201ENST00000384463 107 ntBASIC-2.04□□□□□ -2.74
CLCF1Q9UBD9 RNU6-663P-201ENST00000391105 106 ntBASIC-2.04□□□□□ -2.74
CLCF1Q9UBD9 RNU6-828P-201ENST00000364876 107 ntBASIC-2.05□□□□□ -2.74
CLCF1Q9UBD9 RNU6-231P-201ENST00000517122 103 ntBASIC-2.05□□□□□ -2.74
CLCF1Q9UBD9 Y_RNA.616-201ENST00000410835 95 ntBASIC-2.06□□□□□ -2.74
CLCF1Q9UBD9 Y_RNA.564-201ENST00000384708 106 ntBASIC-2.07□□□□□ -2.74
CLCF1Q9UBD9 AC062037.1-201ENST00000605302 128 ntBASIC-2.07□□□□□ -2.74
CLCF1Q9UBD9 Y_RNA.591-201ENST00000410228 104 ntBASIC-2.09□□□□□ -2.74
CLCF1Q9UBD9 SNORA25.4-201ENST00000363666 124 ntBASIC-2.1□□□□□ -2.75
CLCF1Q9UBD9 SNORA25.5-201ENST00000363782 126 ntBASIC-2.1□□□□□ -2.75
CLCF1Q9UBD9 MIR3202-2-201ENST00000635980 79 ntBASIC-2.1□□□□□ -2.75
CLCF1Q9UBD9 Y_RNA.545-201ENST00000384652 105 ntBASIC-2.11□□□□□ -2.75
CLCF1Q9UBD9 SNORD18C-201ENST00000362704 69 ntBASIC-2.12□□□□□ -2.75
CLCF1Q9UBD9 RNU6-530P-201ENST00000391180 107 ntBASIC-2.12□□□□□ -2.75
CLCF1Q9UBD9 SNORD30.1-201ENST00000391309 70 ntBASIC-2.12□□□□□ -2.75
CLCF1Q9UBD9 RNU6-871P-201ENST00000516122 100 ntBASIC-2.12□□□□□ -2.75
CLCF1Q9UBD9 RNU6-122P-201ENST00000516818 107 ntBASIC-2.12□□□□□ -2.75
CLCF1Q9UBD9 Y_RNA.81-201ENST00000362997 102 ntBASIC-2.13□□□□□ -2.75
CLCF1Q9UBD9 RNU6-194P-201ENST00000363862 105 ntBASIC-2.13□□□□□ -2.75
CLCF1Q9UBD9 RNU6-1206P-201ENST00000516339 103 ntBASIC-2.13□□□□□ -2.75
CLCF1Q9UBD9 VTRNA2-1-201ENST00000602301 127 ntBASIC-2.13□□□□□ -2.75
CLCF1Q9UBD9 CR2-207ENST00000640301 151 ntTSL 1 (best) BASIC-2.13□□□□□ -2.75
CLCF1Q9UBD9 Y_RNA.55-201ENST00000362797 102 ntBASIC-2.14□□□□□ -2.75
CLCF1Q9UBD9 RNA5SP405-201ENST00000363059 114 ntBASIC-2.14□□□□□ -2.75
CLCF1Q9UBD9 Y_RNA.225-201ENST00000364326 97 ntBASIC-2.14□□□□□ -2.75
CLCF1Q9UBD9 SNORD60-201ENST00000383903 83 ntBASIC-2.14□□□□□ -2.75
Retrieved 100 of 98,524 protein–RNA pairs in 13.6 ms