Protein–RNA interactions for Protein: Q9BQ90

KLHDC3, Kelch domain-containing protein 3, humanhuman

Predictions only

Length 382 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
KLHDC3Q9BQ90 MIR664A-201ENST00000626086 82 ntBASIC-1.7□□□□□ -2.68
KLHDC3Q9BQ90 RNU6-400P-201ENST00000391173 106 ntBASIC-1.71□□□□□ -2.68
KLHDC3Q9BQ90 Y_RNA.603-201ENST00000410571 108 ntBASIC-1.71□□□□□ -2.68
KLHDC3Q9BQ90 U2.18-201ENST00000622185 84 ntBASIC-1.71□□□□□ -2.68
KLHDC3Q9BQ90 Y_RNA.103-201ENST00000363171 102 ntBASIC-1.72□□□□□ -2.68
KLHDC3Q9BQ90 Y_RNA.340-201ENST00000365330 92 ntBASIC-1.72□□□□□ -2.68
KLHDC3Q9BQ90 MIR4712-201ENST00000583750 82 ntBASIC-1.72□□□□□ -2.68
KLHDC3Q9BQ90 MIR1245B-201ENST00000636115 69 ntBASIC-1.72□□□□□ -2.68
KLHDC3Q9BQ90 RNU6-194P-201ENST00000363862 105 ntBASIC-1.73□□□□□ -2.69
KLHDC3Q9BQ90 RNU6-1241P-201ENST00000384536 107 ntBASIC-1.73□□□□□ -2.69
KLHDC3Q9BQ90 MIR548AA1-201ENST00000384971 97 ntBASIC-1.73□□□□□ -2.69
KLHDC3Q9BQ90 MIR23C-201ENST00000579846 100 ntBASIC-1.73□□□□□ -2.69
KLHDC3Q9BQ90 RNU6-79P-201ENST00000362511 107 ntBASIC-1.74□□□□□ -2.69
KLHDC3Q9BQ90 Y_RNA.291-201ENST00000364886 113 ntBASIC-1.74□□□□□ -2.69
KLHDC3Q9BQ90 RNU6-608P-201ENST00000383927 104 ntBASIC-1.74□□□□□ -2.69
KLHDC3Q9BQ90 RNU6-1111P-201ENST00000391118 107 ntBASIC-1.74□□□□□ -2.69
KLHDC3Q9BQ90 MIR154-201ENST00000385243 84 ntBASIC-1.75□□□□□ -2.69
KLHDC3Q9BQ90 RNU6-895P-201ENST00000384125 103 ntBASIC-1.76□□□□□ -2.69
KLHDC3Q9BQ90 MIR520D-201ENST00000385002 87 ntBASIC-1.76□□□□□ -2.69
KLHDC3Q9BQ90 RNU6-70P-201ENST00000516438 60 ntBASIC-1.76□□□□□ -2.69
KLHDC3Q9BQ90 TARS-215ENST00000626210 201 ntTSL 5 BASIC-1.76□□□□□ -2.69
KLHDC3Q9BQ90 RNU6-242P-201ENST00000384359 107 ntBASIC-1.78□□□□□ -2.69
KLHDC3Q9BQ90 SNORA41B-201ENST00000384785 128 ntBASIC-1.78□□□□□ -2.69
KLHDC3Q9BQ90 RNY4P30-201ENST00000410216 95 ntBASIC-1.78□□□□□ -2.69
KLHDC3Q9BQ90 MIR3170-201ENST00000582699 77 ntBASIC-1.78□□□□□ -2.69
KLHDC3Q9BQ90 hsa-mir-550a-2.1-201ENST00000637473 97 ntBASIC-1.78□□□□□ -2.69
KLHDC3Q9BQ90 RNU6-1267P-201ENST00000410747 107 ntBASIC-1.79□□□□□ -2.7
KLHDC3Q9BQ90 SNORD1B-201ENST00000363091 84 ntBASIC-1.8□□□□□ -2.7
KLHDC3Q9BQ90 SNORD116-24-201ENST00000384549 92 ntBASIC-1.81□□□□□ -2.7
KLHDC3Q9BQ90 RNU6-153P-201ENST00000364422 104 ntBASIC-1.82□□□□□ -2.7
KLHDC3Q9BQ90 MIR450A2-201ENST00000385022 100 ntBASIC-1.82□□□□□ -2.7
KLHDC3Q9BQ90 RNU6-995P-201ENST00000391244 107 ntBASIC-1.82□□□□□ -2.7
KLHDC3Q9BQ90 Y_RNA.694-201ENST00000516677 117 ntBASIC-1.82□□□□□ -2.7
KLHDC3Q9BQ90 MIR494-201ENST00000349529 81 ntBASIC-1.83□□□□□ -2.7
KLHDC3Q9BQ90 RNU6-247P-201ENST00000362636 107 ntBASIC-1.83□□□□□ -2.7
KLHDC3Q9BQ90 RNU6-1276P-201ENST00000365372 104 ntBASIC-1.83□□□□□ -2.7
KLHDC3Q9BQ90 Y_RNA.443-201ENST00000384135 111 ntBASIC-1.83□□□□□ -2.7
KLHDC3Q9BQ90 SPRY4-IT1_2.1-201ENST00000612613 121 ntBASIC-1.83□□□□□ -2.7
KLHDC3Q9BQ90 Y_RNA.94-201ENST00000363068 106 ntBASIC-1.84□□□□□ -2.7
KLHDC3Q9BQ90 Y_RNA.186-201ENST00000363899 92 ntBASIC-1.84□□□□□ -2.7
KLHDC3Q9BQ90 CR2-207ENST00000640301 151 ntTSL 1 (best) BASIC-1.84□□□□□ -2.7
KLHDC3Q9BQ90 RNU6-230P-201ENST00000362457 104 ntBASIC-1.85□□□□□ -2.71
KLHDC3Q9BQ90 Y_RNA.175-201ENST00000363794 111 ntBASIC-1.85□□□□□ -2.71
KLHDC3Q9BQ90 RNU4-88P-201ENST00000411220 86 ntBASIC-1.85□□□□□ -2.71
KLHDC3Q9BQ90 RNU6ATAC17P-201ENST00000516074 71 ntBASIC-1.85□□□□□ -2.71
KLHDC3Q9BQ90 MIR4666B-201ENST00000578142 81 ntBASIC-1.85□□□□□ -2.71
KLHDC3Q9BQ90 RNU6-1079P-201ENST00000362861 110 ntBASIC-1.86□□□□□ -2.71
KLHDC3Q9BQ90 RNU6-542P-201ENST00000516405 103 ntBASIC-1.86□□□□□ -2.71
KLHDC3Q9BQ90 Y_RNA.699-201ENST00000516803 93 ntBASIC-1.86□□□□□ -2.71
KLHDC3Q9BQ90 SNORD115-31-201ENST00000365318 82 ntBASIC-1.87□□□□□ -2.71
KLHDC3Q9BQ90 MIR3134-201ENST00000579433 74 ntBASIC-1.87□□□□□ -2.71
KLHDC3Q9BQ90 RNU6-294P-201ENST00000364999 102 ntBASIC-1.88□□□□□ -2.71
KLHDC3Q9BQ90 RNU6-695P-201ENST00000391157 104 ntBASIC-1.88□□□□□ -2.71
KLHDC3Q9BQ90 RNU7-151P-201ENST00000516930 53 ntBASIC-1.88□□□□□ -2.71
KLHDC3Q9BQ90 Y_RNA.788-201ENST00000622394 112 ntBASIC-1.88□□□□□ -2.71
KLHDC3Q9BQ90 Y_RNA.591-201ENST00000410228 104 ntBASIC-1.89□□□□□ -2.71
KLHDC3Q9BQ90 RNU6-172P-201ENST00000411000 93 ntBASIC-1.89□□□□□ -2.71
KLHDC3Q9BQ90 RNU6-687P-201ENST00000516443 89 ntBASIC-1.89□□□□□ -2.71
KLHDC3Q9BQ90 U2.22-201ENST00000636441 106 ntBASIC-1.9□□□□□ -2.71
KLHDC3Q9BQ90 RNU6-1121P-201ENST00000516802 109 ntBASIC-1.91□□□□□ -2.72
KLHDC3Q9BQ90 RNU6-411P-201ENST00000384451 107 ntBASIC-1.92□□□□□ -2.72
KLHDC3Q9BQ90 AL078612.1-201ENST00000533009 150 ntTSL 5 BASIC-1.92□□□□□ -2.72
KLHDC3Q9BQ90 AC120024.2-201ENST00000576526 175 ntBASIC-1.92□□□□□ -2.72
KLHDC3Q9BQ90 RNU6-92P-201ENST00000605893 104 ntBASIC-1.92□□□□□ -2.72
KLHDC3Q9BQ90 ST7-OT3_1.1-201ENST00000619607 74 ntBASIC-1.92□□□□□ -2.72
KLHDC3Q9BQ90 Y_RNA.397-201ENST00000383950 98 ntBASIC-1.93□□□□□ -2.72
KLHDC3Q9BQ90 RNU6-820P-201ENST00000384273 107 ntBASIC-1.93□□□□□ -2.72
KLHDC3Q9BQ90 SNORA27.2-201ENST00000363365 126 ntBASIC-1.94□□□□□ -2.72
KLHDC3Q9BQ90 RNU6-258P-201ENST00000390884 101 ntBASIC-1.94□□□□□ -2.72
KLHDC3Q9BQ90 Y_RNA.781-201ENST00000620301 103 ntBASIC-1.94□□□□□ -2.72
KLHDC3Q9BQ90 MTRNR2L9-201ENST00000622562 75 ntBASIC-1.94□□□□□ -2.72
KLHDC3Q9BQ90 SNORD63.2-201ENST00000516303 64 ntBASIC-1.95□□□□□ -2.72
KLHDC3Q9BQ90 MIR7978-201ENST00000636158 59 ntBASIC-1.95□□□□□ -2.72
KLHDC3Q9BQ90 RNU6-669P-201ENST00000365575 107 ntBASIC-1.96□□□□□ -2.72
KLHDC3Q9BQ90 RNU6-841P-201ENST00000383872 107 ntBASIC-1.96□□□□□ -2.72
KLHDC3Q9BQ90 Y_RNA.566-201ENST00000384735 101 ntBASIC-1.96□□□□□ -2.72
KLHDC3Q9BQ90 MIR579-201ENST00000385221 98 ntBASIC-1.96□□□□□ -2.72
KLHDC3Q9BQ90 Y_RNA.369-201ENST00000365568 117 ntBASIC-1.97□□□□□ -2.72
KLHDC3Q9BQ90 MIR125B1-201ENST00000385236 88 ntBASIC-1.97□□□□□ -2.72
KLHDC3Q9BQ90 MIR3123-201ENST00000583417 75 ntBASIC-1.97□□□□□ -2.72
KLHDC3Q9BQ90 U7.4-201ENST00000614961 63 ntBASIC-1.97□□□□□ -2.72
KLHDC3Q9BQ90 RNU6-563P-201ENST00000364872 108 ntBASIC-1.98□□□□□ -2.73
KLHDC3Q9BQ90 Y_RNA.321-201ENST00000365149 102 ntBASIC-1.98□□□□□ -2.73
KLHDC3Q9BQ90 RNU6-787P-201ENST00000384032 107 ntBASIC-1.98□□□□□ -2.73
KLHDC3Q9BQ90 TRAJ9-201ENST00000390528 61 ntAPPRIS P1 BASIC-1.98□□□□□ -2.73
KLHDC3Q9BQ90 RNU6-803P-201ENST00000516034 102 ntBASIC-1.98□□□□□ -2.73
KLHDC3Q9BQ90 MIR548AM-201ENST00000584298 74 ntBASIC-1.98□□□□□ -2.73
KLHDC3Q9BQ90 RNU7-160P-201ENST00000516660 62 ntBASIC-1.99□□□□□ -2.73
KLHDC3Q9BQ90 RNU6-1015P-201ENST00000517121 99 ntBASIC-1.99□□□□□ -2.73
KLHDC3Q9BQ90 MIR5582-201ENST00000579697 68 ntBASIC-1.99□□□□□ -2.73
KLHDC3Q9BQ90 SNORD60.1-201ENST00000362451 73 ntBASIC-2.01□□□□□ -2.73
KLHDC3Q9BQ90 RNU6-634P-201ENST00000459134 106 ntBASIC-2.01□□□□□ -2.73
KLHDC3Q9BQ90 RNU6-523P-201ENST00000516304 54 ntBASIC-2.01□□□□□ -2.73
KLHDC3Q9BQ90 TRAJ33-201ENST00000390504 57 ntAPPRIS P1 BASIC-2.03□□□□□ -2.73
KLHDC3Q9BQ90 RNU6-1034P-201ENST00000365335 101 ntBASIC-2.04□□□□□ -2.74
KLHDC3Q9BQ90 Y_RNA.449-201ENST00000384187 102 ntBASIC-2.04□□□□□ -2.74
KLHDC3Q9BQ90 AC062037.1-201ENST00000605302 128 ntBASIC-2.04□□□□□ -2.74
KLHDC3Q9BQ90 MIR7110-201ENST00000612638 86 ntBASIC-2.04□□□□□ -2.74
KLHDC3Q9BQ90 RNU6-663P-201ENST00000391105 106 ntBASIC-2.05□□□□□ -2.74
KLHDC3Q9BQ90 SMAD5-AS1_3.1-201ENST00000614187 124 ntBASIC-2.06□□□□□ -2.74
Retrieved 100 of 98,524 protein–RNA pairs in 8.1 ms