Protein–RNA interactions for Protein: Q53GG5

PDLIM3, PDZ and LIM domain protein 3, humanhuman

Predicted RBP Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3Q53GG5 SNORD54-201ENST00000459159 67 ntBASIC-1.1□□□□□ -2.59
PDLIM3Q53GG5 MIR5683-201ENST00000636514 76 ntBASIC-1.1□□□□□ -2.59
PDLIM3Q53GG5 Y_RNA.53-201ENST00000362765 102 ntBASIC-1.11□□□□□ -2.59
PDLIM3Q53GG5 RNU6-598P-201ENST00000364017 105 ntBASIC-1.11□□□□□ -2.59
PDLIM3Q53GG5 RNU6-696P-201ENST00000390834 107 ntBASIC-1.11□□□□□ -2.59
PDLIM3Q53GG5 RNU6-1262P-201ENST00000516217 96 ntBASIC-1.11□□□□□ -2.59
PDLIM3Q53GG5 Y_RNA.232-201ENST00000364369 96 ntBASIC-1.12□□□□□ -2.59
PDLIM3Q53GG5 Y_RNA.545-201ENST00000384652 105 ntBASIC-1.12□□□□□ -2.59
PDLIM3Q53GG5 RPL35AP4-201ENST00000412007 102 ntBASIC-1.12□□□□□ -2.59
PDLIM3Q53GG5 MIR4490-201ENST00000582647 84 ntBASIC-1.12□□□□□ -2.59
PDLIM3Q53GG5 U2.18-201ENST00000622185 84 ntBASIC-1.12□□□□□ -2.59
PDLIM3Q53GG5 SNORA41B-201ENST00000384785 128 ntBASIC-1.13□□□□□ -2.59
PDLIM3Q53GG5 RNA5SP225-201ENST00000410874 135 ntBASIC-1.13□□□□□ -2.59
PDLIM3Q53GG5 RNU6-857P-201ENST00000515893 110 ntBASIC-1.13□□□□□ -2.59
PDLIM3Q53GG5 MIR4679-1-201ENST00000637619 75 ntBASIC-1.13□□□□□ -2.59
PDLIM3Q53GG5 AC091912.2-201ENST00000624798 167 ntBASIC-1.14□□□□□ -2.59
PDLIM3Q53GG5 MIR6874-201ENST00000635894 71 ntBASIC-1.14□□□□□ -2.59
PDLIM3Q53GG5 HLA-S-202ENST00000425174 53 ntBASIC-1.15□□□□□ -2.59
PDLIM3Q53GG5 RNU6-164P-201ENST00000364604 103 ntBASIC-1.16□□□□□ -2.6
PDLIM3Q53GG5 SNORD116-16-201ENST00000384533 92 ntBASIC-1.16□□□□□ -2.6
PDLIM3Q53GG5 SNORD78.1-201ENST00000390866 65 ntBASIC-1.17□□□□□ -2.6
PDLIM3Q53GG5 RNU6-663P-201ENST00000391105 106 ntBASIC-1.17□□□□□ -2.6
PDLIM3Q53GG5 Y_RNA.225-201ENST00000364326 97 ntBASIC-1.18□□□□□ -2.6
PDLIM3Q53GG5 RNU6-540P-201ENST00000384622 101 ntBASIC-1.18□□□□□ -2.6
PDLIM3Q53GG5 AC090616.4-201ENST00000448026 115 ntBASIC-1.18□□□□□ -2.6
PDLIM3Q53GG5 AC138207.3-201ENST00000585289 166 ntBASIC-1.18□□□□□ -2.6
PDLIM3Q53GG5 SNORD30.1-201ENST00000391309 70 ntBASIC-1.19□□□□□ -2.6
PDLIM3Q53GG5 RNU6-634P-201ENST00000459134 106 ntBASIC-1.19□□□□□ -2.6
PDLIM3Q53GG5 RNU6-542P-201ENST00000516405 103 ntBASIC-1.19□□□□□ -2.6
PDLIM3Q53GG5 TRAJ9-201ENST00000390528 61 ntAPPRIS P1 BASIC-1.2□□□□□ -2.6
PDLIM3Q53GG5 RNU6-630P-201ENST00000391258 106 ntBASIC-1.2□□□□□ -2.6
PDLIM3Q53GG5 RNU6-279P-201ENST00000391297 101 ntBASIC-1.2□□□□□ -2.6
PDLIM3Q53GG5 MIR6502-201ENST00000617296 76 ntBASIC-1.2□□□□□ -2.6
PDLIM3Q53GG5 Y_RNA.443-201ENST00000384135 111 ntBASIC-1.21□□□□□ -2.6
PDLIM3Q53GG5 MIR4520-1-201ENST00000582609 70 ntBASIC-1.21□□□□□ -2.6
PDLIM3Q53GG5 SNORD1B-201ENST00000363091 84 ntBASIC-1.22□□□□□ -2.6
PDLIM3Q53GG5 MIR1302-4-201ENST00000408701 150 ntBASIC-1.22□□□□□ -2.6
PDLIM3Q53GG5 MIR5591-201ENST00000578248 65 ntBASIC-1.23□□□□□ -2.61
PDLIM3Q53GG5 MIR579-201ENST00000385221 98 ntBASIC-1.24□□□□□ -2.61
PDLIM3Q53GG5 RNU6-1267P-201ENST00000410747 107 ntBASIC-1.24□□□□□ -2.61
PDLIM3Q53GG5 RNU6-983P-201ENST00000516004 103 ntBASIC-1.24□□□□□ -2.61
PDLIM3Q53GG5 RNU6-92P-201ENST00000605893 104 ntBASIC-1.24□□□□□ -2.61
PDLIM3Q53GG5 Y_RNA.603-201ENST00000410571 108 ntBASIC-1.25□□□□□ -2.61
PDLIM3Q53GG5 hsa-mir-550a-2.1-201ENST00000637473 97 ntBASIC-1.25□□□□□ -2.61
PDLIM3Q53GG5 MIR548AA1-201ENST00000384971 97 ntBASIC-1.26□□□□□ -2.61
PDLIM3Q53GG5 RNU6-172P-201ENST00000411000 93 ntBASIC-1.26□□□□□ -2.61
PDLIM3Q53GG5 RNU6-871P-201ENST00000516122 100 ntBASIC-1.26□□□□□ -2.61
PDLIM3Q53GG5 RNU6-523P-201ENST00000516304 54 ntBASIC-1.26□□□□□ -2.61
PDLIM3Q53GG5 RNU6-247P-201ENST00000362636 107 ntBASIC-1.27□□□□□ -2.61
PDLIM3Q53GG5 RNU6-1111P-201ENST00000391118 107 ntBASIC-1.27□□□□□ -2.61
PDLIM3Q53GG5 MIR4770-201ENST00000579149 58 ntBASIC-1.27□□□□□ -2.61
PDLIM3Q53GG5 RNU6-608P-201ENST00000383927 104 ntBASIC-1.28□□□□□ -2.61
PDLIM3Q53GG5 MIR520D-201ENST00000385002 87 ntBASIC-1.28□□□□□ -2.61
PDLIM3Q53GG5 RNU6-995P-201ENST00000391244 107 ntBASIC-1.28□□□□□ -2.61
PDLIM3Q53GG5 AC018880.2-201ENST00000414265 201 ntBASIC-1.28□□□□□ -2.61
PDLIM3Q53GG5 RNU6-649P-201ENST00000384463 107 ntBASIC-1.29□□□□□ -2.62
PDLIM3Q53GG5 Y_RNA.565-201ENST00000384719 101 ntBASIC-1.29□□□□□ -2.62
PDLIM3Q53GG5 RNU6-118P-201ENST00000516552 102 ntBASIC-1.29□□□□□ -2.62
PDLIM3Q53GG5 RNU6-79P-201ENST00000362511 107 ntBASIC-1.3□□□□□ -2.62
PDLIM3Q53GG5 RNU7-151P-201ENST00000516930 53 ntBASIC-1.3□□□□□ -2.62
PDLIM3Q53GG5 MIR3170-201ENST00000582699 77 ntBASIC-1.3□□□□□ -2.62
PDLIM3Q53GG5 SNORD60.1-201ENST00000362451 73 ntBASIC-1.32□□□□□ -2.62
PDLIM3Q53GG5 SNORA25.4-201ENST00000363666 124 ntBASIC-1.32□□□□□ -2.62
PDLIM3Q53GG5 Y_RNA.340-201ENST00000365330 92 ntBASIC-1.33□□□□□ -2.62
PDLIM3Q53GG5 RNU6-400P-201ENST00000391173 106 ntBASIC-1.34□□□□□ -2.62
PDLIM3Q53GG5 SPRY4-IT1_2.1-201ENST00000612613 121 ntBASIC-1.34□□□□□ -2.62
PDLIM3Q53GG5 RNA5SP86-201ENST00000390869 98 ntBASIC-1.35□□□□□ -2.63
PDLIM3Q53GG5 MIR4662A-201ENST00000637499 67 ntBASIC-1.35□□□□□ -2.63
PDLIM3Q53GG5 RNU6-776P-201ENST00000364403 104 ntBASIC-1.36□□□□□ -2.63
PDLIM3Q53GG5 RNU6-1022P-201ENST00000365049 104 ntBASIC-1.36□□□□□ -2.63
PDLIM3Q53GG5 MIR548H1-201ENST00000408610 102 ntBASIC-1.36□□□□□ -2.63
PDLIM3Q53GG5 AC005520.4-201ENST00000604337 90 ntBASIC-1.36□□□□□ -2.63
PDLIM3Q53GG5 U6.111-201ENST00000636093 83 ntBASIC-1.36□□□□□ -2.63
PDLIM3Q53GG5 SNORA25.5-201ENST00000363782 126 ntBASIC-1.37□□□□□ -2.63
PDLIM3Q53GG5 Y_RNA.678-201ENST00000516408 96 ntBASIC-1.37□□□□□ -2.63
PDLIM3Q53GG5 SNORD116.2-201ENST00000391251 93 ntBASIC-1.38□□□□□ -2.63
PDLIM3Q53GG5 SNORD63.2-201ENST00000516303 64 ntBASIC-1.38□□□□□ -2.63
PDLIM3Q53GG5 Y_RNA.699-201ENST00000516803 93 ntBASIC-1.38□□□□□ -2.63
PDLIM3Q53GG5 RNU6-563P-201ENST00000364872 108 ntBASIC-1.4□□□□□ -2.63
PDLIM3Q53GG5 MIR487B-201ENST00000385021 84 ntBASIC-1.4□□□□□ -2.63
PDLIM3Q53GG5 RNU6-258P-201ENST00000390884 101 ntBASIC-1.4□□□□□ -2.63
PDLIM3Q53GG5 RNU6-539P-201ENST00000516665 103 ntBASIC-1.4□□□□□ -2.63
PDLIM3Q53GG5 AC120024.2-201ENST00000576526 175 ntBASIC-1.4□□□□□ -2.63
PDLIM3Q53GG5 MIR7978-201ENST00000636158 59 ntBASIC-1.4□□□□□ -2.63
PDLIM3Q53GG5 MIR23C-201ENST00000579846 100 ntBASIC-1.41□□□□□ -2.64
PDLIM3Q53GG5 MIR7110-201ENST00000612638 86 ntBASIC-1.41□□□□□ -2.64
PDLIM3Q53GG5 Y_RNA.175-201ENST00000363794 111 ntBASIC-1.42□□□□□ -2.64
PDLIM3Q53GG5 RNU6-695P-201ENST00000391157 104 ntBASIC-1.42□□□□□ -2.64
PDLIM3Q53GG5 RNU6-231P-201ENST00000517122 103 ntBASIC-1.42□□□□□ -2.64
PDLIM3Q53GG5 Y_RNA.103-201ENST00000363171 102 ntBASIC-1.43□□□□□ -2.64
PDLIM3Q53GG5 Y_RNA.186-201ENST00000363899 92 ntBASIC-1.43□□□□□ -2.64
PDLIM3Q53GG5 RNU6-810P-201ENST00000364001 107 ntBASIC-1.43□□□□□ -2.64
PDLIM3Q53GG5 RNU6-669P-201ENST00000365575 107 ntBASIC-1.43□□□□□ -2.64
PDLIM3Q53GG5 Y_RNA.685-201ENST00000516532 108 ntBASIC-1.43□□□□□ -2.64
PDLIM3Q53GG5 RNU6-800P-201ENST00000384473 103 ntBASIC-1.44□□□□□ -2.64
PDLIM3Q53GG5 RNU6-122P-201ENST00000516818 107 ntBASIC-1.45□□□□□ -2.64
PDLIM3Q53GG5 MIR4511-201ENST00000582784 87 ntBASIC-1.45□□□□□ -2.64
PDLIM3Q53GG5 ST7-OT3_1.1-201ENST00000619607 74 ntBASIC-1.47□□□□□ -2.64
PDLIM3Q53GG5 MTRNR2L9-201ENST00000622562 75 ntBASIC-1.47□□□□□ -2.64
PDLIM3Q53GG5 SNORD18.1-201ENST00000363807 70 ntBASIC-1.48□□□□□ -2.65
Retrieved 100 of 98,524 protein–RNA pairs in 14.5 ms