Protein–RNA interactions for Protein: P53667

LIMK1, LIM domain kinase 1, humanhuman

Predictions only

Length 647 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMK1P53667 MIR4712-201ENST00000583750 82 ntBASIC-1.66□□□□□ -2.68
LIMK1P53667 RNU6-119P-201ENST00000364882 107 ntBASIC-1.67□□□□□ -2.68
LIMK1P53667 RNU6-1276P-201ENST00000365372 104 ntBASIC-1.67□□□□□ -2.68
LIMK1P53667 RNU6-841P-201ENST00000383872 107 ntBASIC-1.67□□□□□ -2.68
LIMK1P53667 RNU6-1152P-201ENST00000384576 107 ntBASIC-1.67□□□□□ -2.68
LIMK1P53667 U2.18-201ENST00000622185 84 ntBASIC-1.67□□□□□ -2.68
LIMK1P53667 RNU6-1241P-201ENST00000384536 107 ntBASIC-1.68□□□□□ -2.68
LIMK1P53667 MIR520D-201ENST00000385002 87 ntBASIC-1.69□□□□□ -2.68
LIMK1P53667 MIR23C-201ENST00000579846 100 ntBASIC-1.69□□□□□ -2.68
LIMK1P53667 MIR3123-201ENST00000583417 75 ntBASIC-1.7□□□□□ -2.68
LIMK1P53667 LINC01984-201ENST00000583863 301 ntTSL 3 BASIC-1.7□□□□□ -2.68
LIMK1P53667 Y_RNA.284-201ENST00000364806 102 ntBASIC-1.71□□□□□ -2.68
LIMK1P53667 Y_RNA.449-201ENST00000384187 102 ntBASIC-1.71□□□□□ -2.68
LIMK1P53667 MIR548AM-201ENST00000584298 74 ntBASIC-1.71□□□□□ -2.68
LIMK1P53667 MIR496-201ENST00000385226 102 ntBASIC-1.72□□□□□ -2.68
LIMK1P53667 CR2-207ENST00000640301 151 ntTSL 1 (best) BASIC-1.72□□□□□ -2.68
LIMK1P53667 RNU6ATAC17P-201ENST00000516074 71 ntBASIC-1.73□□□□□ -2.69
LIMK1P53667 MIR5582-201ENST00000579697 68 ntBASIC-1.73□□□□□ -2.69
LIMK1P53667 SNORD116-16-201ENST00000384533 92 ntBASIC-1.74□□□□□ -2.69
LIMK1P53667 SNORA41B-201ENST00000384785 128 ntBASIC-1.74□□□□□ -2.69
LIMK1P53667 RNU6-980P-201ENST00000516925 103 ntBASIC-1.74□□□□□ -2.69
LIMK1P53667 MIR3139-201ENST00000579145 76 ntBASIC-1.74□□□□□ -2.69
LIMK1P53667 Y_RNA.204-201ENST00000364112 102 ntBASIC-1.75□□□□□ -2.69
LIMK1P53667 RNU6-820P-201ENST00000384273 107 ntBASIC-1.75□□□□□ -2.69
LIMK1P53667 Y_RNA.564-201ENST00000384708 106 ntBASIC-1.76□□□□□ -2.69
LIMK1P53667 MIR548AA1-201ENST00000384971 97 ntBASIC-1.76□□□□□ -2.69
LIMK1P53667 RNU6-1267P-201ENST00000410747 107 ntBASIC-1.76□□□□□ -2.69
LIMK1P53667 VTRNA2-1-201ENST00000602301 127 ntBASIC-1.76□□□□□ -2.69
LIMK1P53667 Y_RNA.81-201ENST00000362997 102 ntBASIC-1.77□□□□□ -2.69
LIMK1P53667 Y_RNA.94-201ENST00000363068 106 ntBASIC-1.77□□□□□ -2.69
LIMK1P53667 RNU6-563P-201ENST00000364872 108 ntBASIC-1.77□□□□□ -2.69
LIMK1P53667 AL078612.1-201ENST00000533009 150 ntTSL 5 BASIC-1.77□□□□□ -2.69
LIMK1P53667 MIR4666B-201ENST00000578142 81 ntBASIC-1.77□□□□□ -2.69
LIMK1P53667 RNA5SP405-201ENST00000363059 114 ntBASIC-1.78□□□□□ -2.69
LIMK1P53667 Y_RNA.211-201ENST00000364164 101 ntBASIC-1.78□□□□□ -2.69
LIMK1P53667 Y_RNA.369-201ENST00000365568 117 ntBASIC-1.78□□□□□ -2.69
LIMK1P53667 RNU6-1111P-201ENST00000391118 107 ntBASIC-1.78□□□□□ -2.69
LIMK1P53667 MIR3170-201ENST00000582699 77 ntBASIC-1.78□□□□□ -2.69
LIMK1P53667 Y_RNA.781-201ENST00000620301 103 ntBASIC-1.78□□□□□ -2.69
LIMK1P53667 RNU6-194P-201ENST00000363862 105 ntBASIC-1.79□□□□□ -2.7
LIMK1P53667 SNORD1B-201ENST00000363091 84 ntBASIC-1.8□□□□□ -2.7
LIMK1P53667 SNORD116-24-201ENST00000384549 92 ntBASIC-1.8□□□□□ -2.7
LIMK1P53667 MT-TM-201ENST00000387377 68 ntBASIC-1.8□□□□□ -2.7
LIMK1P53667 AC120024.2-201ENST00000576526 175 ntBASIC-1.8□□□□□ -2.7
LIMK1P53667 RNU4-88P-201ENST00000411220 86 ntBASIC-1.81□□□□□ -2.7
LIMK1P53667 MIR3134-201ENST00000579433 74 ntBASIC-1.81□□□□□ -2.7
LIMK1P53667 ST7-OT3_1.1-201ENST00000619607 74 ntBASIC-1.82□□□□□ -2.7
LIMK1P53667 Y_RNA.403-201ENST00000383977 101 ntBASIC-1.83□□□□□ -2.7
LIMK1P53667 Y_RNA.788-201ENST00000622394 112 ntBASIC-1.83□□□□□ -2.7
LIMK1P53667 SNORD115-31-201ENST00000365318 82 ntBASIC-1.84□□□□□ -2.7
LIMK1P53667 hsa-mir-4536-1.1-201ENST00000636519 88 ntBASIC-1.84□□□□□ -2.7
LIMK1P53667 RNU6-1034P-201ENST00000365335 101 ntBASIC-1.85□□□□□ -2.71
LIMK1P53667 RNU6-258P-201ENST00000390884 101 ntBASIC-1.85□□□□□ -2.71
LIMK1P53667 RNU6-995P-201ENST00000391244 107 ntBASIC-1.85□□□□□ -2.71
LIMK1P53667 Y_RNA.591-201ENST00000410228 104 ntBASIC-1.85□□□□□ -2.71
LIMK1P53667 Y_RNA.699-201ENST00000516803 93 ntBASIC-1.85□□□□□ -2.71
LIMK1P53667 SPRY4-IT1_2.1-201ENST00000612613 121 ntBASIC-1.85□□□□□ -2.71
LIMK1P53667 RNU6-411P-201ENST00000384451 107 ntBASIC-1.86□□□□□ -2.71
LIMK1P53667 SNORD54-201ENST00000459159 67 ntBASIC-1.86□□□□□ -2.71
LIMK1P53667 MIR548W-201ENST00000581970 74 ntBASIC-1.86□□□□□ -2.71
LIMK1P53667 U7.4-201ENST00000614961 63 ntBASIC-1.86□□□□□ -2.71
LIMK1P53667 RNU6-247P-201ENST00000362636 107 ntBASIC-1.87□□□□□ -2.71
LIMK1P53667 MIR4748-201ENST00000578076 82 ntBASIC-1.87□□□□□ -2.71
LIMK1P53667 MTRNR2L9-201ENST00000622562 75 ntBASIC-1.87□□□□□ -2.71
LIMK1P53667 RNU6-542P-201ENST00000516405 103 ntBASIC-1.88□□□□□ -2.71
LIMK1P53667 RNU6-687P-201ENST00000516443 89 ntBASIC-1.88□□□□□ -2.71
LIMK1P53667 RNU7-151P-201ENST00000516930 53 ntBASIC-1.88□□□□□ -2.71
LIMK1P53667 AC062037.1-201ENST00000605302 128 ntBASIC-1.88□□□□□ -2.71
LIMK1P53667 TARS-215ENST00000626210 201 ntTSL 5 BASIC-1.89□□□□□ -2.71
LIMK1P53667 SNORD19B.1-201ENST00000630615 80 ntBASIC-1.89□□□□□ -2.71
LIMK1P53667 RNU6-1306P-201ENST00000365219 99 ntBASIC-1.9□□□□□ -2.71
LIMK1P53667 RNU6-787P-201ENST00000384032 107 ntBASIC-1.9□□□□□ -2.71
LIMK1P53667 MIR579-201ENST00000385221 98 ntBASIC-1.9□□□□□ -2.71
LIMK1P53667 RNU6-172P-201ENST00000411000 93 ntBASIC-1.91□□□□□ -2.72
LIMK1P53667 AC005520.4-201ENST00000604337 90 ntBASIC-1.91□□□□□ -2.72
LIMK1P53667 AC013734.1-201ENST00000619329 111 ntBASIC-1.91□□□□□ -2.72
LIMK1P53667 SNORA27.2-201ENST00000363365 126 ntBASIC-1.92□□□□□ -2.72
LIMK1P53667 RNA5SP93-201ENST00000362525 114 ntBASIC-1.93□□□□□ -2.72
LIMK1P53667 RNA5SP170-201ENST00000517150 101 ntBASIC-1.93□□□□□ -2.72
LIMK1P53667 MIR7978-201ENST00000636158 59 ntBASIC-1.93□□□□□ -2.72
LIMK1P53667 snoU13.10-201ENST00000459301 103 ntBASIC-1.94□□□□□ -2.72
LIMK1P53667 MIR466-201ENST00000580653 84 ntBASIC-1.95□□□□□ -2.72
LIMK1P53667 RNU6-92P-201ENST00000605893 104 ntBASIC-1.95□□□□□ -2.72
LIMK1P53667 RNU6-669P-201ENST00000365575 107 ntBASIC-1.96□□□□□ -2.72
LIMK1P53667 TRAJ9-201ENST00000390528 61 ntAPPRIS P1 BASIC-1.96□□□□□ -2.72
LIMK1P53667 SNORD63.2-201ENST00000516303 64 ntBASIC-1.96□□□□□ -2.72
LIMK1P53667 RNU6-1015P-201ENST00000517121 99 ntBASIC-1.96□□□□□ -2.72
LIMK1P53667 hsa-mir-4773-1.1-201ENST00000585225 78 ntBASIC-1.97□□□□□ -2.72
LIMK1P53667 MIR3202-2-201ENST00000635980 79 ntBASIC-1.98□□□□□ -2.73
LIMK1P53667 Y_RNA.421-201ENST00000384052 101 ntBASIC-1.99□□□□□ -2.73
LIMK1P53667 MIR125B1-201ENST00000385236 88 ntBASIC-1.99□□□□□ -2.73
LIMK1P53667 FTX_4.1-201ENST00000616291 147 ntBASIC-1.99□□□□□ -2.73
LIMK1P53667 Y_RNA.53-201ENST00000362765 102 ntBASIC-2□□□□□ -2.73
LIMK1P53667 SNORD73B-201ENST00000364394 72 ntBASIC-2□□□□□ -2.73
LIMK1P53667 RNU6-663P-201ENST00000391105 106 ntBASIC-2□□□□□ -2.73
LIMK1P53667 Y_RNA.321-201ENST00000365149 102 ntBASIC-2.02□□□□□ -2.73
LIMK1P53667 RNU6-974P-201ENST00000384099 108 ntBASIC-2.02□□□□□ -2.73
LIMK1P53667 Y_RNA.443-201ENST00000384135 111 ntBASIC-2.02□□□□□ -2.73
LIMK1P53667 MIR581-201ENST00000384895 96 ntBASIC-2.02□□□□□ -2.73
LIMK1P53667 TRAJ33-201ENST00000390504 57 ntAPPRIS P1 BASIC-2.02□□□□□ -2.73
Retrieved 100 of 98,524 protein–RNA pairs in 81.2 ms