Protein–RNA interactions for Protein: P38398

BRCA1, Breast cancer type 1 susceptibility protein, humanhuman

Known RBP Predictions only

Length 1,863 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1P38398 Y_RNA.73-201ENST00000362910 113 ntBASIC-1.97□□□□□ -2.72
BRCA1P38398 RNU6-640P-201ENST00000363693 105 ntBASIC-1.97□□□□□ -2.72
BRCA1P38398 TMSB4XP3-201ENST00000445144 114 ntBASIC-1.97□□□□□ -2.72
BRCA1P38398 SPRY4-IT1_2.1-201ENST00000612613 121 ntBASIC-1.97□□□□□ -2.72
BRCA1P38398 IGLL4P-201ENST00000614590 133 ntBASIC-1.97□□□□□ -2.72
BRCA1P38398 MIR1245B-201ENST00000636115 69 ntBASIC-1.97□□□□□ -2.73
BRCA1P38398 Y_RNA.284-201ENST00000364806 102 ntBASIC-1.98□□□□□ -2.73
BRCA1P38398 RNU6-1134P-201ENST00000365156 101 ntBASIC-1.98□□□□□ -2.73
BRCA1P38398 RNU6-147P-201ENST00000383983 107 ntBASIC-1.98□□□□□ -2.73
BRCA1P38398 RNU6-1247P-201ENST00000516622 98 ntBASIC-1.98□□□□□ -2.73
BRCA1P38398 MTRNR2L9-201ENST00000622562 75 ntBASIC-1.98□□□□□ -2.73
BRCA1P38398 SNORA63.4-201ENST00000362763 126 ntBASIC-1.99□□□□□ -2.73
BRCA1P38398 RNU6-974P-201ENST00000384099 108 ntBASIC-1.99□□□□□ -2.73
BRCA1P38398 AC108019.1-201ENST00000512540 175 ntBASIC-1.99□□□□□ -2.73
BRCA1P38398 SNORD63.2-201ENST00000516303 64 ntBASIC-1.99□□□□□ -2.73
BRCA1P38398 RNU6-919P-201ENST00000516731 104 ntBASIC-1.99□□□□□ -2.73
BRCA1P38398 MIR3668-201ENST00000582138 75 ntBASIC-1.99□□□□□ -2.73
BRCA1P38398 SNORD18C-201ENST00000362704 69 ntBASIC-1.99□□□□□ -2.73
BRCA1P38398 Y_RNA.103-201ENST00000363171 102 ntBASIC-1.99□□□□□ -2.73
BRCA1P38398 MIR496-201ENST00000385226 102 ntBASIC-1.99□□□□□ -2.73
BRCA1P38398 RNU6-523P-201ENST00000516304 54 ntBASIC-1.99□□□□□ -2.73
BRCA1P38398 SNORA25.5-201ENST00000363782 126 ntBASIC-2□□□□□ -2.73
BRCA1P38398 RNU6-92P-201ENST00000605893 104 ntBASIC-2.01□□□□□ -2.73
BRCA1P38398 Y_RNA.449-201ENST00000384187 102 ntBASIC-2.01□□□□□ -2.73
BRCA1P38398 MIR450A2-201ENST00000385022 100 ntBASIC-2.01□□□□□ -2.73
BRCA1P38398 RNU6-172P-201ENST00000411000 93 ntBASIC-2.01□□□□□ -2.73
BRCA1P38398 RNU6-313P-201ENST00000516317 112 ntBASIC-2.01□□□□□ -2.73
BRCA1P38398 MIR664B-201ENST00000626756 61 ntBASIC-2.01□□□□□ -2.73
BRCA1P38398 RNY3P8-201ENST00000411366 126 ntBASIC-2.02□□□□□ -2.73
BRCA1P38398 SNORD116-24-201ENST00000384549 92 ntBASIC-2.03□□□□□ -2.73
BRCA1P38398 Y_RNA.593-201ENST00000410292 98 ntBASIC-2.03□□□□□ -2.73
BRCA1P38398 RNA5SP89-201ENST00000410300 108 ntBASIC-2.03□□□□□ -2.73
BRCA1P38398 snoU13.10-201ENST00000459301 103 ntBASIC-2.03□□□□□ -2.73
BRCA1P38398 RNU6-1015P-201ENST00000517121 99 ntBASIC-2.03□□□□□ -2.73
BRCA1P38398 SNORD60.1-201ENST00000362451 73 ntBASIC-2.03□□□□□ -2.73
BRCA1P38398 RNU6-49P-201ENST00000384256 107 ntBASIC-2.03□□□□□ -2.73
BRCA1P38398 RNU6-980P-201ENST00000516925 103 ntBASIC-2.03□□□□□ -2.73
BRCA1P38398 MIR4756-201ENST00000577874 78 ntBASIC-2.03□□□□□ -2.73
BRCA1P38398 MIR5588-201ENST00000581890 63 ntBASIC-2.03□□□□□ -2.73
BRCA1P38398 MIR548W-201ENST00000581970 74 ntBASIC-2.03□□□□□ -2.73
BRCA1P38398 CR2-207ENST00000640301 151 ntTSL 1 (best) BASIC-2.03□□□□□ -2.73
BRCA1P38398 RNU6-649P-201ENST00000384463 107 ntBASIC-2.04□□□□□ -2.74
BRCA1P38398 AL606753.1-201ENST00000427435 87 ntBASIC-2.04□□□□□ -2.74
BRCA1P38398 TRAJ9-201ENST00000390528 61 ntAPPRIS P1 BASIC-2.05□□□□□ -2.74
BRCA1P38398 SNORD115-31-201ENST00000365318 82 ntBASIC-2.06□□□□□ -2.74
BRCA1P38398 RNU6-44P-201ENST00000384045 107 ntBASIC-2.06□□□□□ -2.74
BRCA1P38398 RNU6-118P-201ENST00000516552 102 ntBASIC-2.06□□□□□ -2.74
BRCA1P38398 RNU6-940P-201ENST00000363433 104 ntBASIC-2.07□□□□□ -2.74
BRCA1P38398 Y_RNA.403-201ENST00000383977 101 ntBASIC-2.07□□□□□ -2.74
BRCA1P38398 MIR125B1-201ENST00000385236 88 ntBASIC-2.07□□□□□ -2.74
BRCA1P38398 MIR548AI-201ENST00000579940 88 ntBASIC-2.07□□□□□ -2.74
BRCA1P38398 MIR379-201ENST00000362218 67 ntBASIC-2.08□□□□□ -2.74
BRCA1P38398 Y_RNA.316-201ENST00000365118 111 ntBASIC-2.08□□□□□ -2.74
BRCA1P38398 RNU6-895P-201ENST00000384125 103 ntBASIC-2.08□□□□□ -2.74
BRCA1P38398 U7.4-201ENST00000614961 63 ntBASIC-2.09□□□□□ -2.74
BRCA1P38398 MT-TR-201ENST00000387439 65 ntBASIC-2.09□□□□□ -2.74
BRCA1P38398 MIR548N-201ENST00000408742 75 ntBASIC-2.09□□□□□ -2.74
BRCA1P38398 RNU4-88P-201ENST00000411220 86 ntBASIC-2.09□□□□□ -2.74
BRCA1P38398 RNU7-160P-201ENST00000516660 62 ntBASIC-2.09□□□□□ -2.74
BRCA1P38398 RNU6-810P-201ENST00000364001 107 ntBASIC-2.11□□□□□ -2.75
BRCA1P38398 RNU6-361P-201ENST00000364454 107 ntBASIC-2.11□□□□□ -2.75
BRCA1P38398 Y_RNA.591-201ENST00000410228 104 ntBASIC-2.11□□□□□ -2.75
BRCA1P38398 MIR3139-201ENST00000579145 76 ntBASIC-2.11□□□□□ -2.75
BRCA1P38398 hsa-mir-4773-1.1-201ENST00000585225 78 ntBASIC-2.11□□□□□ -2.75
BRCA1P38398 RNU6-663P-201ENST00000391105 106 ntBASIC-2.11□□□□□ -2.75
BRCA1P38398 MIR4712-201ENST00000583750 82 ntBASIC-2.11□□□□□ -2.75
BRCA1P38398 Y_RNA.94-201ENST00000363068 106 ntBASIC-2.12□□□□□ -2.75
BRCA1P38398 SNORD45.2-201ENST00000363552 72 ntBASIC-2.12□□□□□ -2.75
BRCA1P38398 SNORD116.2-201ENST00000391251 93 ntBASIC-2.12□□□□□ -2.75
BRCA1P38398 MIR3134-201ENST00000579433 74 ntBASIC-2.14□□□□□ -2.75
BRCA1P38398 RNU6-520P-201ENST00000384717 104 ntBASIC-2.14□□□□□ -2.75
BRCA1P38398 RNU6-789P-201ENST00000517105 102 ntBASIC-2.14□□□□□ -2.75
BRCA1P38398 AL078612.1-201ENST00000533009 150 ntTSL 5 BASIC-2.14□□□□□ -2.75
BRCA1P38398 MIR4666B-201ENST00000578142 81 ntBASIC-2.14□□□□□ -2.75
BRCA1P38398 VTRNA2-1-201ENST00000602301 127 ntBASIC-2.14□□□□□ -2.75
BRCA1P38398 MIR7110-201ENST00000612638 86 ntBASIC-2.14□□□□□ -2.75
BRCA1P38398 Y_RNA.788-201ENST00000622394 112 ntBASIC-2.14□□□□□ -2.75
BRCA1P38398 RNU6-1276P-201ENST00000365372 104 ntBASIC-2.15□□□□□ -2.75
BRCA1P38398 RNU6-294P-201ENST00000364999 102 ntBASIC-2.16□□□□□ -2.75
BRCA1P38398 MIR581-201ENST00000384895 96 ntBASIC-2.16□□□□□ -2.75
BRCA1P38398 SNORA40B-201ENST00000385573 128 ntBASIC-2.16□□□□□ -2.75
BRCA1P38398 RNU6-215P-201ENST00000365169 102 ntBASIC-2.16□□□□□ -2.76
BRCA1P38398 RNA5SP405-201ENST00000363059 114 ntBASIC-2.17□□□□□ -2.76
BRCA1P38398 SNORD113-1-201ENST00000365321 69 ntBASIC-2.17□□□□□ -2.76
BRCA1P38398 RNU6-687P-201ENST00000516443 89 ntBASIC-2.17□□□□□ -2.76
BRCA1P38398 MIR202-201ENST00000362219 110 ntBASIC-2.18□□□□□ -2.76
BRCA1P38398 RNU6-828P-201ENST00000364876 107 ntBASIC-2.19□□□□□ -2.76
BRCA1P38398 Y_RNA.349-201ENST00000365406 102 ntBASIC-2.19□□□□□ -2.76
BRCA1P38398 Y_RNA.501-201ENST00000384467 103 ntBASIC-2.19□□□□□ -2.76
BRCA1P38398 SNORA17.4-201ENST00000391287 132 ntBASIC-2.19□□□□□ -2.76
BRCA1P38398 MIR494-201ENST00000349529 81 ntBASIC-2.2□□□□□ -2.76
BRCA1P38398 Y_RNA.211-201ENST00000364164 101 ntBASIC-2.2□□□□□ -2.76
BRCA1P38398 RNU6-1206P-201ENST00000516339 103 ntBASIC-2.2□□□□□ -2.76
BRCA1P38398 RNU6-411P-201ENST00000384451 107 ntBASIC-2.2□□□□□ -2.76
BRCA1P38398 RNU6-1296P-201ENST00000383879 107 ntBASIC-2.21□□□□□ -2.76
BRCA1P38398 RNU6-787P-201ENST00000384032 107 ntBASIC-2.21□□□□□ -2.76
BRCA1P38398 RNU6-820P-201ENST00000384273 107 ntBASIC-2.21□□□□□ -2.76
BRCA1P38398 SNORD54-201ENST00000459159 67 ntBASIC-2.22□□□□□ -2.76
BRCA1P38398 RNU6-912P-201ENST00000363800 104 ntBASIC-2.23□□□□□ -2.77
BRCA1P38398 RNU7-119P-201ENST00000459279 63 ntBASIC-2.23□□□□□ -2.77
Retrieved 100 of 98,524 protein–RNA pairs in 71.4 ms