Protein–RNA interactions for Protein: P34897

SHMT2, Serine hydroxymethyltransferase, mitochondrial, humanhuman

Predictions only

Length 504 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2P34897 RNY1P1-201ENST00000364372 112 ntBASIC-1.55□□□□□ -2.66
SHMT2P34897 SNORD20-201ENST00000384550 80 ntBASIC-1.55□□□□□ -2.66
SHMT2P34897 MIR581-201ENST00000384895 96 ntBASIC-1.55□□□□□ -2.66
SHMT2P34897 IGLL4P-201ENST00000614590 133 ntBASIC-1.55□□□□□ -2.66
SHMT2P34897 U6.97-201ENST00000636904 101 ntBASIC-1.55□□□□□ -2.66
SHMT2P34897 MIR365A-201ENST00000362260 87 ntBASIC-1.56□□□□□ -2.66
SHMT2P34897 RNU6-1034P-201ENST00000365335 101 ntBASIC-1.56□□□□□ -2.66
SHMT2P34897 MIR154-201ENST00000385243 84 ntBASIC-1.56□□□□□ -2.66
SHMT2P34897 MIR1468-201ENST00000410600 86 ntBASIC-1.56□□□□□ -2.66
SHMT2P34897 Y_RNA.629-201ENST00000411368 105 ntBASIC-1.56□□□□□ -2.66
SHMT2P34897 MIR548W-201ENST00000581970 74 ntBASIC-1.56□□□□□ -2.66
SHMT2P34897 RNU4-88P-201ENST00000411220 86 ntBASIC-1.57□□□□□ -2.66
SHMT2P34897 SNORD19B.1-201ENST00000630615 80 ntBASIC-1.57□□□□□ -2.66
SHMT2P34897 SNORD60.1-201ENST00000362451 73 ntBASIC-1.58□□□□□ -2.66
SHMT2P34897 Y_RNA.69-201ENST00000362885 109 ntBASIC-1.58□□□□□ -2.66
SHMT2P34897 RNU6-787P-201ENST00000384032 107 ntBASIC-1.58□□□□□ -2.66
SHMT2P34897 MIR4441-201ENST00000582623 100 ntBASIC-1.58□□□□□ -2.66
SHMT2P34897 RNU6-92P-201ENST00000605893 104 ntBASIC-1.58□□□□□ -2.66
SHMT2P34897 MIR664B-201ENST00000626756 61 ntBASIC-1.58□□□□□ -2.66
SHMT2P34897 RNA5SP89-201ENST00000410300 108 ntBASIC-1.59□□□□□ -2.66
SHMT2P34897 RNU6-542P-201ENST00000516405 103 ntBASIC-1.59□□□□□ -2.66
SHMT2P34897 RNU6-789P-201ENST00000517105 102 ntBASIC-1.59□□□□□ -2.66
SHMT2P34897 RNU6-895P-201ENST00000384125 103 ntBASIC-1.6□□□□□ -2.67
SHMT2P34897 snoU13.10-201ENST00000459301 103 ntBASIC-1.6□□□□□ -2.67
SHMT2P34897 RNU6-919P-201ENST00000516731 104 ntBASIC-1.6□□□□□ -2.67
SHMT2P34897 RNU6-44P-201ENST00000384045 107 ntBASIC-1.61□□□□□ -2.67
SHMT2P34897 RNU7-160P-201ENST00000516660 62 ntBASIC-1.61□□□□□ -2.67
SHMT2P34897 RNU6-810P-201ENST00000364001 107 ntBASIC-1.62□□□□□ -2.67
SHMT2P34897 RNU6ATAC17P-201ENST00000516074 71 ntBASIC-1.62□□□□□ -2.67
SHMT2P34897 RNU6-980P-201ENST00000516925 103 ntBASIC-1.62□□□□□ -2.67
SHMT2P34897 MIR4666B-201ENST00000578142 81 ntBASIC-1.62□□□□□ -2.67
SHMT2P34897 MIR198-201ENST00000637333 62 ntBASIC-1.62□□□□□ -2.67
SHMT2P34897 RNU6-231P-201ENST00000517122 103 ntBASIC-1.63□□□□□ -2.67
SHMT2P34897 hsa-mir-4773-1.1-201ENST00000585225 78 ntBASIC-1.63□□□□□ -2.67
SHMT2P34897 MIR494-201ENST00000349529 81 ntBASIC-1.64□□□□□ -2.67
SHMT2P34897 RNA5SP331-201ENST00000364986 107 ntBASIC-1.64□□□□□ -2.67
SHMT2P34897 RNU6-520P-201ENST00000384717 104 ntBASIC-1.64□□□□□ -2.67
SHMT2P34897 AL606753.1-201ENST00000427435 87 ntBASIC-1.64□□□□□ -2.67
SHMT2P34897 RNU6ATAC32P-201ENST00000516026 76 ntBASIC-1.64□□□□□ -2.67
SHMT2P34897 MIR7110-201ENST00000612638 86 ntBASIC-1.64□□□□□ -2.67
SHMT2P34897 MIR202-201ENST00000362219 110 ntBASIC-1.65□□□□□ -2.67
SHMT2P34897 Y_RNA.211-201ENST00000364164 101 ntBASIC-1.65□□□□□ -2.67
SHMT2P34897 Y_RNA.321-201ENST00000365149 102 ntBASIC-1.65□□□□□ -2.67
SHMT2P34897 RNU6-1276P-201ENST00000365372 104 ntBASIC-1.65□□□□□ -2.67
SHMT2P34897 Y_RNA.284-201ENST00000364806 102 ntBASIC-1.66□□□□□ -2.68
SHMT2P34897 Y_RNA.543-201ENST00000384649 107 ntBASIC-1.66□□□□□ -2.68
SHMT2P34897 MIR548N-201ENST00000408742 75 ntBASIC-1.66□□□□□ -2.68
SHMT2P34897 SNORD18C-201ENST00000362704 69 ntBASIC-1.67□□□□□ -2.68
SHMT2P34897 RNU6-828P-201ENST00000364876 107 ntBASIC-1.67□□□□□ -2.68
SHMT2P34897 Y_RNA.443-201ENST00000384135 111 ntBASIC-1.67□□□□□ -2.68
SHMT2P34897 SNORA40.16-201ENST00000517238 121 ntBASIC-1.67□□□□□ -2.68
SHMT2P34897 LINC01984-201ENST00000583863 301 ntTSL 3 BASIC-1.67□□□□□ -2.68
SHMT2P34897 U4.2-201ENST00000618561 85 ntBASIC-1.67□□□□□ -2.68
SHMT2P34897 CR2-207ENST00000640301 151 ntTSL 1 (best) BASIC-1.67□□□□□ -2.68
SHMT2P34897 Y_RNA.591-201ENST00000410228 104 ntBASIC-1.68□□□□□ -2.68
SHMT2P34897 RNU6-1206P-201ENST00000516339 103 ntBASIC-1.68□□□□□ -2.68
SHMT2P34897 AL078612.1-201ENST00000533009 150 ntTSL 5 BASIC-1.68□□□□□ -2.68
SHMT2P34897 Y_RNA.55-201ENST00000362797 102 ntBASIC-1.69□□□□□ -2.68
SHMT2P34897 RNU6-153P-201ENST00000364422 104 ntBASIC-1.69□□□□□ -2.68
SHMT2P34897 RNU6-649P-201ENST00000384463 107 ntBASIC-1.69□□□□□ -2.68
SHMT2P34897 SNORD116.2-201ENST00000391251 93 ntBASIC-1.69□□□□□ -2.68
SHMT2P34897 RNY4P30-201ENST00000410216 95 ntBASIC-1.69□□□□□ -2.68
SHMT2P34897 Y_RNA.616-201ENST00000410835 95 ntBASIC-1.69□□□□□ -2.68
SHMT2P34897 RNU6-361P-201ENST00000364454 107 ntBASIC-1.7□□□□□ -2.68
SHMT2P34897 RNU6-411P-201ENST00000384451 107 ntBASIC-1.7□□□□□ -2.68
SHMT2P34897 Y_RNA.564-201ENST00000384708 106 ntBASIC-1.7□□□□□ -2.68
SHMT2P34897 SNORA40B-201ENST00000385573 128 ntBASIC-1.7□□□□□ -2.68
SHMT2P34897 RNU6-634P-201ENST00000459134 106 ntBASIC-1.7□□□□□ -2.68
SHMT2P34897 RNU6-68P-201ENST00000516576 104 ntBASIC-1.7□□□□□ -2.68
SHMT2P34897 AL627230.5-201ENST00000619807 58 ntBASIC-1.7□□□□□ -2.68
SHMT2P34897 Y_RNA.291-201ENST00000364886 113 ntBASIC-1.71□□□□□ -2.68
SHMT2P34897 MIR450A2-201ENST00000385022 100 ntBASIC-1.71□□□□□ -2.68
SHMT2P34897 RNU6-122P-201ENST00000516818 107 ntBASIC-1.71□□□□□ -2.68
SHMT2P34897 RNA5SP405-201ENST00000363059 114 ntBASIC-1.72□□□□□ -2.68
SHMT2P34897 Y_RNA.413-201ENST00000384007 102 ntBASIC-1.72□□□□□ -2.68
SHMT2P34897 SNORA17.4-201ENST00000391287 132 ntBASIC-1.72□□□□□ -2.68
SHMT2P34897 Y_RNA.754-201ENST00000476024 102 ntBASIC-1.72□□□□□ -2.68
SHMT2P34897 Y_RNA.790-201ENST00000614282 102 ntBASIC-1.72□□□□□ -2.68
SHMT2P34897 Y_RNA.782-201ENST00000614695 102 ntBASIC-1.72□□□□□ -2.68
SHMT2P34897 SNORA25.5-201ENST00000363782 126 ntBASIC-1.73□□□□□ -2.69
SHMT2P34897 SNORD60-201ENST00000383903 83 ntBASIC-1.73□□□□□ -2.69
SHMT2P34897 RNU6-242P-201ENST00000384359 107 ntBASIC-1.73□□□□□ -2.69
SHMT2P34897 RNU6-663P-201ENST00000391105 106 ntBASIC-1.73□□□□□ -2.69
SHMT2P34897 RNU6-294P-201ENST00000364999 102 ntBASIC-1.74□□□□□ -2.69
SHMT2P34897 Y_RNA.349-201ENST00000365406 102 ntBASIC-1.74□□□□□ -2.69
SHMT2P34897 RNU6-530P-201ENST00000391180 107 ntBASIC-1.75□□□□□ -2.69
SHMT2P34897 AC062037.1-201ENST00000605302 128 ntBASIC-1.75□□□□□ -2.69
SHMT2P34897 U7.4-201ENST00000614961 63 ntBASIC-1.75□□□□□ -2.69
SHMT2P34897 SNORD114-3-201ENST00000364969 75 ntBASIC-1.76□□□□□ -2.69
SHMT2P34897 TRGJP-201ENST00000390338 61 ntAPPRIS P1 BASIC-1.76□□□□□ -2.69
SHMT2P34897 AC097484.2-201ENST00000509147 251 ntBASIC-1.76□□□□□ -2.69
SHMT2P34897 RNU6-118P-201ENST00000516552 102 ntBASIC-1.76□□□□□ -2.69
SHMT2P34897 MIR4748-201ENST00000578076 82 ntBASIC-1.76□□□□□ -2.69
SHMT2P34897 SNORA25.4-201ENST00000363666 124 ntBASIC-1.78□□□□□ -2.69
SHMT2P34897 SNORD113-3-201ENST00000364830 72 ntBASIC-1.78□□□□□ -2.69
SHMT2P34897 AL451105.1-201ENST00000450005 189 ntBASIC-1.78□□□□□ -2.69
SHMT2P34897 RNU6-194P-201ENST00000363862 105 ntBASIC-1.79□□□□□ -2.7
SHMT2P34897 RNU6-1047P-201ENST00000364418 107 ntBASIC-1.79□□□□□ -2.7
SHMT2P34897 RNU6-1324P-201ENST00000384222 107 ntBASIC-1.79□□□□□ -2.7
SHMT2P34897 MIR5582-201ENST00000579697 68 ntBASIC-1.79□□□□□ -2.7
Retrieved 100 of 98,524 protein–RNA pairs in 174.8 ms