Protein–RNA interactions for Protein: P31249

HOXD3, Homeobox protein Hox-D3, humanhuman

Predicted RBP Predictions only

Length 432 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD3P31249 MIR365A-201ENST00000362260 87 ntBASIC-0.49□□□□□ -2.49
HOXD3P31249 Y_RNA.55-201ENST00000362797 102 ntBASIC-0.49□□□□□ -2.49
HOXD3P31249 SNORD114-17-201ENST00000364699 75 ntBASIC-0.49□□□□□ -2.49
HOXD3P31249 AC139453.2-201ENST00000487255 133 ntBASIC-0.49□□□□□ -2.49
HOXD3P31249 RNU6-1238P-201ENST00000517215 102 ntBASIC-0.49□□□□□ -2.49
HOXD3P31249 MIR429-201ENST00000362106 83 ntBASIC-0.5□□□□□ -2.49
HOXD3P31249 RNU6-226P-201ENST00000363778 107 ntBASIC-0.5□□□□□ -2.49
HOXD3P31249 SNORD1B-201ENST00000363091 84 ntBASIC-0.51□□□□□ -2.49
HOXD3P31249 RNU6-696P-201ENST00000390834 107 ntBASIC-0.51□□□□□ -2.49
HOXD3P31249 AC110620.1-201ENST00000416042 228 ntBASIC-0.51□□□□□ -2.49
HOXD3P31249 RNU6-732P-201ENST00000516033 103 ntBASIC-0.51□□□□□ -2.49
HOXD3P31249 Y_RNA.684-201ENST00000516510 99 ntBASIC-0.51□□□□□ -2.49
HOXD3P31249 SNORD19-201ENST00000391191 68 ntBASIC-0.52□□□□□ -2.49
HOXD3P31249 RNY4P27-201ENST00000363341 96 ntBASIC-0.53□□□□□ -2.49
HOXD3P31249 Y_RNA.340-201ENST00000365330 92 ntBASIC-0.53□□□□□ -2.49
HOXD3P31249 TRAJ42-201ENST00000390495 66 ntAPPRIS P1 BASIC-0.53□□□□□ -2.49
HOXD3P31249 RNU6-122P-201ENST00000516818 107 ntBASIC-0.53□□□□□ -2.49
HOXD3P31249 MIR4441-201ENST00000582623 100 ntBASIC-0.53□□□□□ -2.49
HOXD3P31249 RNU6-1233P-201ENST00000362922 102 ntBASIC-0.54□□□□□ -2.5
HOXD3P31249 Y_RNA.442-201ENST00000384131 102 ntBASIC-0.54□□□□□ -2.5
HOXD3P31249 MIR1285-2-201ENST00000408311 88 ntBASIC-0.54□□□□□ -2.5
HOXD3P31249 RNA5SP180-201ENST00000516181 101 ntBASIC-0.54□□□□□ -2.5
HOXD3P31249 AP002795.1-201ENST00000534879 84 ntBASIC-0.54□□□□□ -2.5
HOXD3P31249 MIR466-201ENST00000580653 84 ntBASIC-0.54□□□□□ -2.5
HOXD3P31249 RNU6-590P-201ENST00000365039 107 ntBASIC-0.55□□□□□ -2.5
HOXD3P31249 SNORA26.4-201ENST00000391188 123 ntBASIC-0.55□□□□□ -2.5
HOXD3P31249 SNORD63.1-201ENST00000516178 80 ntBASIC-0.55□□□□□ -2.5
HOXD3P31249 RNU6-706P-201ENST00000517229 104 ntBASIC-0.55□□□□□ -2.5
HOXD3P31249 MIR6502-201ENST00000617296 76 ntBASIC-0.55□□□□□ -2.5
HOXD3P31249 RNA5SP26-201ENST00000362406 119 ntBASIC-0.56□□□□□ -2.5
HOXD3P31249 RNU6-940P-201ENST00000363433 104 ntBASIC-0.56□□□□□ -2.5
HOXD3P31249 RNU6-172P-201ENST00000411000 93 ntBASIC-0.56□□□□□ -2.5
HOXD3P31249 MIR3165-201ENST00000579874 75 ntBASIC-0.56□□□□□ -2.5
HOXD3P31249 ULK3-223ENST00000631115 126 ntTSL 5 BASIC-0.56□□□□□ -2.5
HOXD3P31249 MIR579-201ENST00000385221 98 ntBASIC-0.57□□□□□ -2.5
HOXD3P31249 MIR548Q-201ENST00000408404 100 ntBASIC-0.57□□□□□ -2.5
HOXD3P31249 MIR5591-201ENST00000578248 65 ntBASIC-0.57□□□□□ -2.5
HOXD3P31249 hsa-mir-3607.1-201ENST00000637229 79 ntBASIC-0.57□□□□□ -2.5
HOXD3P31249 HLA-S-202ENST00000425174 53 ntBASIC-0.58□□□□□ -2.5
HOXD3P31249 AC125388.1-201ENST00000459631 156 ntBASIC-0.58□□□□□ -2.5
HOXD3P31249 MIR6818-201ENST00000621576 65 ntBASIC-0.58□□□□□ -2.5
HOXD3P31249 AC091912.2-201ENST00000624798 167 ntBASIC-0.58□□□□□ -2.5
HOXD3P31249 SNORD115-33-201ENST00000363723 82 ntBASIC-0.59□□□□□ -2.5
HOXD3P31249 RNU6-1267P-201ENST00000410747 107 ntBASIC-0.59□□□□□ -2.5
HOXD3P31249 RNU7-151P-201ENST00000516930 53 ntBASIC-0.59□□□□□ -2.5
HOXD3P31249 AC138207.3-201ENST00000585289 166 ntBASIC-0.59□□□□□ -2.5
HOXD3P31249 MIR6874-201ENST00000635894 71 ntBASIC-0.59□□□□□ -2.5
HOXD3P31249 MIR29B1-201ENST00000385015 81 ntBASIC-0.6□□□□□ -2.51
HOXD3P31249 RNA5SP86-201ENST00000390869 98 ntBASIC-0.6□□□□□ -2.51
HOXD3P31249 RNU6-231P-201ENST00000517122 103 ntBASIC-0.6□□□□□ -2.51
HOXD3P31249 snoU83B.1-201ENST00000517136 88 ntBASIC-0.6□□□□□ -2.51
HOXD3P31249 MIR3938-201ENST00000582157 103 ntBASIC-0.6□□□□□ -2.51
HOXD3P31249 MIR4520-1-201ENST00000582609 70 ntBASIC-0.6□□□□□ -2.51
HOXD3P31249 SPRY4-IT1_2.1-201ENST00000612613 121 ntBASIC-0.6□□□□□ -2.51
HOXD3P31249 MIR548AA1-201ENST00000384971 97 ntBASIC-0.61□□□□□ -2.51
HOXD3P31249 MIR4770-201ENST00000579149 58 ntBASIC-0.61□□□□□ -2.51
HOXD3P31249 MIR1246-201ENST00000636535 73 ntBASIC-0.61□□□□□ -2.51
HOXD3P31249 MIR487B-201ENST00000385021 84 ntBASIC-0.62□□□□□ -2.51
HOXD3P31249 SNORD116.2-201ENST00000391251 93 ntBASIC-0.62□□□□□ -2.51
HOXD3P31249 AL353691.2-201ENST00000443795 59 ntBASIC-0.62□□□□□ -2.51
HOXD3P31249 Y_RNA.228-201ENST00000364346 98 ntBASIC-0.63□□□□□ -2.51
HOXD3P31249 MIR7110-201ENST00000612638 86 ntBASIC-0.63□□□□□ -2.51
HOXD3P31249 RNU6-1079P-201ENST00000362861 110 ntBASIC-0.64□□□□□ -2.51
HOXD3P31249 RNU6-810P-201ENST00000364001 107 ntBASIC-0.64□□□□□ -2.51
HOXD3P31249 RNU6-669P-201ENST00000365575 107 ntBASIC-0.64□□□□□ -2.51
HOXD3P31249 Y_RNA.616-201ENST00000410835 95 ntBASIC-0.64□□□□□ -2.51
HOXD3P31249 MIR5683-201ENST00000636514 76 ntBASIC-0.64□□□□□ -2.51
HOXD3P31249 Y_RNA.232-201ENST00000364369 96 ntBASIC-0.65□□□□□ -2.51
HOXD3P31249 RNU6-983P-201ENST00000516004 103 ntBASIC-0.65□□□□□ -2.51
HOXD3P31249 Y_RNA.678-201ENST00000516408 96 ntBASIC-0.65□□□□□ -2.51
HOXD3P31249 MIR7978-201ENST00000636158 59 ntBASIC-0.65□□□□□ -2.51
HOXD3P31249 RNU6-164P-201ENST00000364604 103 ntBASIC-0.66□□□□□ -2.52
HOXD3P31249 MIR3170-201ENST00000582699 77 ntBASIC-0.66□□□□□ -2.52
HOXD3P31249 SNORD18.1-201ENST00000363807 70 ntBASIC-0.67□□□□□ -2.52
HOXD3P31249 MIR520D-201ENST00000385002 87 ntBASIC-0.67□□□□□ -2.52
HOXD3P31249 MIR4756-201ENST00000577874 78 ntBASIC-0.67□□□□□ -2.52
HOXD3P31249 Y_RNA.475-201ENST00000384345 101 ntBASIC-0.68□□□□□ -2.52
HOXD3P31249 RNU6-576P-201ENST00000390854 102 ntBASIC-0.68□□□□□ -2.52
HOXD3P31249 RNU6-995P-201ENST00000391244 107 ntBASIC-0.68□□□□□ -2.52
HOXD3P31249 MIR548H1-201ENST00000408610 102 ntBASIC-0.68□□□□□ -2.52
HOXD3P31249 AC090616.4-201ENST00000448026 115 ntBASIC-0.68□□□□□ -2.52
HOXD3P31249 AC108019.1-201ENST00000512540 175 ntBASIC-0.68□□□□□ -2.52
HOXD3P31249 Y_RNA.543-201ENST00000384649 107 ntBASIC-0.69□□□□□ -2.52
HOXD3P31249 MIR507-201ENST00000385234 94 ntBASIC-0.69□□□□□ -2.52
HOXD3P31249 RPL35AP4-201ENST00000412007 102 ntBASIC-0.69□□□□□ -2.52
HOXD3P31249 MIR633-201ENST00000384821 98 ntBASIC-0.7□□□□□ -2.52
HOXD3P31249 RNU6-788P-201ENST00000390967 104 ntBASIC-0.7□□□□□ -2.52
HOXD3P31249 SNORA40.16-201ENST00000517238 121 ntBASIC-0.7□□□□□ -2.52
HOXD3P31249 MIR4490-201ENST00000582647 84 ntBASIC-0.7□□□□□ -2.52
HOXD3P31249 RNU6-79P-201ENST00000362511 107 ntBASIC-0.71□□□□□ -2.52
HOXD3P31249 RNU6-446P-201ENST00000362827 106 ntBASIC-0.71□□□□□ -2.52
HOXD3P31249 RNU7-119P-201ENST00000459279 63 ntBASIC-0.71□□□□□ -2.52
HOXD3P31249 Y_RNA.103-201ENST00000363171 102 ntBASIC-0.72□□□□□ -2.52
HOXD3P31249 RNU6-974P-201ENST00000384099 108 ntBASIC-0.73□□□□□ -2.53
HOXD3P31249 SNORA40B-201ENST00000385573 128 ntBASIC-0.73□□□□□ -2.53
HOXD3P31249 RNU6-1111P-201ENST00000391118 107 ntBASIC-0.73□□□□□ -2.53
HOXD3P31249 Y_RNA.564-201ENST00000384708 106 ntBASIC-0.74□□□□□ -2.53
HOXD3P31249 MIR125B1-201ENST00000385236 88 ntBASIC-0.74□□□□□ -2.53
HOXD3P31249 RNU6-258P-201ENST00000390884 101 ntBASIC-0.74□□□□□ -2.53
HOXD3P31249 RNU6ATAC32P-201ENST00000516026 76 ntBASIC-0.74□□□□□ -2.53
Retrieved 100 of 98,524 protein–RNA pairs in 168.6 ms