Protein–RNA interactions for Protein: P31249

HOXD3, Homeobox protein Hox-D3, humanhuman

Predicted RBP Predictions only

Length 432 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD3P31249 MIR365A-201ENST00000362260 87 ntBASIC-0.49□□□□□ -2.49
HOXD3P31249 Y_RNA.55-201ENST00000362797 102 ntBASIC-0.49□□□□□ -2.49
HOXD3P31249 SNORD114-17-201ENST00000364699 75 ntBASIC-0.49□□□□□ -2.49
HOXD3P31249 AC139453.2-201ENST00000487255 133 ntBASIC-0.49□□□□□ -2.49
HOXD3P31249 RNU6-1238P-201ENST00000517215 102 ntBASIC-0.49□□□□□ -2.49
HOXD3P31249 MIR429-201ENST00000362106 83 ntBASIC-0.5□□□□□ -2.49
HOXD3P31249 RNU6-226P-201ENST00000363778 107 ntBASIC-0.5□□□□□ -2.49
HOXD3P31249 SNORD1B-201ENST00000363091 84 ntBASIC-0.51□□□□□ -2.49
HOXD3P31249 RNU6-696P-201ENST00000390834 107 ntBASIC-0.51□□□□□ -2.49
HOXD3P31249 AC110620.1-201ENST00000416042 228 ntBASIC-0.51□□□□□ -2.49
HOXD3P31249 RNU6-732P-201ENST00000516033 103 ntBASIC-0.51□□□□□ -2.49
HOXD3P31249 Y_RNA.684-201ENST00000516510 99 ntBASIC-0.51□□□□□ -2.49
HOXD3P31249 SNORD19-201ENST00000391191 68 ntBASIC-0.52□□□□□ -2.49
HOXD3P31249 RNY4P27-201ENST00000363341 96 ntBASIC-0.53□□□□□ -2.49
HOXD3P31249 Y_RNA.340-201ENST00000365330 92 ntBASIC-0.53□□□□□ -2.49
HOXD3P31249 TRAJ42-201ENST00000390495 66 ntAPPRIS P1 BASIC-0.53□□□□□ -2.49
HOXD3P31249 RNU6-122P-201ENST00000516818 107 ntBASIC-0.53□□□□□ -2.49
HOXD3P31249 MIR4441-201ENST00000582623 100 ntBASIC-0.53□□□□□ -2.49
HOXD3P31249 RNU6-1233P-201ENST00000362922 102 ntBASIC-0.54□□□□□ -2.5
HOXD3P31249 Y_RNA.442-201ENST00000384131 102 ntBASIC-0.54□□□□□ -2.5
HOXD3P31249 MIR1285-2-201ENST00000408311 88 ntBASIC-0.54□□□□□ -2.5
HOXD3P31249 RNA5SP180-201ENST00000516181 101 ntBASIC-0.54□□□□□ -2.5
HOXD3P31249 AP002795.1-201ENST00000534879 84 ntBASIC-0.54□□□□□ -2.5
HOXD3P31249 MIR466-201ENST00000580653 84 ntBASIC-0.54□□□□□ -2.5
HOXD3P31249 RNU6-590P-201ENST00000365039 107 ntBASIC-0.55□□□□□ -2.5
HOXD3P31249 SNORA26.4-201ENST00000391188 123 ntBASIC-0.55□□□□□ -2.5
HOXD3P31249 SNORD63.1-201ENST00000516178 80 ntBASIC-0.55□□□□□ -2.5
HOXD3P31249 RNU6-706P-201ENST00000517229 104 ntBASIC-0.55□□□□□ -2.5
HOXD3P31249 MIR6502-201ENST00000617296 76 ntBASIC-0.55□□□□□ -2.5
HOXD3P31249 RNA5SP26-201ENST00000362406 119 ntBASIC-0.56□□□□□ -2.5
HOXD3P31249 RNU6-940P-201ENST00000363433 104 ntBASIC-0.56□□□□□ -2.5
HOXD3P31249 RNU6-172P-201ENST00000411000 93 ntBASIC-0.56□□□□□ -2.5
HOXD3P31249 MIR3165-201ENST00000579874 75 ntBASIC-0.56□□□□□ -2.5
HOXD3P31249 ULK3-223ENST00000631115 126 ntTSL 5 BASIC-0.56□□□□□ -2.5
HOXD3P31249 MIR579-201ENST00000385221 98 ntBASIC-0.57□□□□□ -2.5
HOXD3P31249 MIR548Q-201ENST00000408404 100 ntBASIC-0.57□□□□□ -2.5
HOXD3P31249 MIR5591-201ENST00000578248 65 ntBASIC-0.57□□□□□ -2.5
HOXD3P31249 hsa-mir-3607.1-201ENST00000637229 79 ntBASIC-0.57□□□□□ -2.5
HOXD3P31249 HLA-S-202ENST00000425174 53 ntBASIC-0.58□□□□□ -2.5
HOXD3P31249 AC125388.1-201ENST00000459631 156 ntBASIC-0.58□□□□□ -2.5
HOXD3P31249 MIR6818-201ENST00000621576 65 ntBASIC-0.58□□□□□ -2.5
HOXD3P31249 AC091912.2-201ENST00000624798 167 ntBASIC-0.58□□□□□ -2.5
HOXD3P31249 SNORD115-33-201ENST00000363723 82 ntBASIC-0.59□□□□□ -2.5
HOXD3P31249 RNU6-1267P-201ENST00000410747 107 ntBASIC-0.59□□□□□ -2.5
HOXD3P31249 RNU7-151P-201ENST00000516930 53 ntBASIC-0.59□□□□□ -2.5
HOXD3P31249 AC138207.3-201ENST00000585289 166 ntBASIC-0.59□□□□□ -2.5
HOXD3P31249 MIR6874-201ENST00000635894 71 ntBASIC-0.59□□□□□ -2.5
HOXD3P31249 MIR29B1-201ENST00000385015 81 ntBASIC-0.6□□□□□ -2.51
HOXD3P31249 RNA5SP86-201ENST00000390869 98 ntBASIC-0.6□□□□□ -2.51
HOXD3P31249 RNU6-231P-201ENST00000517122 103 ntBASIC-0.6□□□□□ -2.51
HOXD3P31249 snoU83B.1-201ENST00000517136 88 ntBASIC-0.6□□□□□ -2.51
HOXD3P31249 MIR3938-201ENST00000582157 103 ntBASIC-0.6□□□□□ -2.51
HOXD3P31249 MIR4520-1-201ENST00000582609 70 ntBASIC-0.6□□□□□ -2.51
HOXD3P31249 SPRY4-IT1_2.1-201ENST00000612613 121 ntBASIC-0.6□□□□□ -2.51
HOXD3P31249 MIR548AA1-201ENST00000384971 97 ntBASIC-0.61□□□□□ -2.51
HOXD3P31249 MIR4770-201ENST00000579149 58 ntBASIC-0.61□□□□□ -2.51
HOXD3P31249 MIR1246-201ENST00000636535 73 ntBASIC-0.61□□□□□ -2.51
HOXD3P31249 MIR487B-201ENST00000385021 84 ntBASIC-0.62□□□□□ -2.51
HOXD3P31249 SNORD116.2-201ENST00000391251 93 ntBASIC-0.62□□□□□ -2.51
HOXD3P31249 AL353691.2-201ENST00000443795 59 ntBASIC-0.62□□□□□ -2.51
HOXD3P31249 Y_RNA.228-201ENST00000364346 98 ntBASIC-0.63□□□□□ -2.51
HOXD3P31249 MIR7110-201ENST00000612638 86 ntBASIC-0.63□□□□□ -2.51
HOXD3P31249 RNU6-1079P-201ENST00000362861 110 ntBASIC-0.64□□□□□ -2.51
HOXD3P31249 RNU6-810P-201ENST00000364001 107 ntBASIC-0.64□□□□□ -2.51
HOXD3P31249 RNU6-669P-201ENST00000365575 107 ntBASIC-0.64□□□□□ -2.51
HOXD3P31249 Y_RNA.616-201ENST00000410835 95 ntBASIC-0.64□□□□□ -2.51
HOXD3P31249 MIR5683-201ENST00000636514 76 ntBASIC-0.64□□□□□ -2.51
HOXD3P31249 Y_RNA.232-201ENST00000364369 96 ntBASIC-0.65□□□□□ -2.51
HOXD3P31249 RNU6-983P-201ENST00000516004 103 ntBASIC-0.65□□□□□ -2.51
HOXD3P31249 Y_RNA.678-201ENST00000516408 96 ntBASIC-0.65□□□□□ -2.51
HOXD3P31249 MIR7978-201ENST00000636158 59 ntBASIC-0.65□□□□□ -2.51
HOXD3P31249 RNU6-164P-201ENST00000364604 103 ntBASIC-0.66□□□□□ -2.52
HOXD3P31249 MIR3170-201ENST00000582699 77 ntBASIC-0.66□□□□□ -2.52
HOXD3P31249 SNORD18.1-201ENST00000363807 70 ntBASIC-0.67□□□□□ -2.52
HOXD3P31249 MIR520D-201ENST00000385002 87 ntBASIC-0.67□□□□□ -2.52
HOXD3P31249 MIR4756-201ENST00000577874 78 ntBASIC-0.67□□□□□ -2.52
HOXD3P31249 Y_RNA.475-201ENST00000384345 101 ntBASIC-0.68□□□□□ -2.52
HOXD3P31249 RNU6-576P-201ENST00000390854 102 ntBASIC-0.68□□□□□ -2.52
HOXD3P31249 RNU6-995P-201ENST00000391244 107 ntBASIC-0.68□□□□□ -2.52
HOXD3P31249 MIR548H1-201ENST00000408610 102 ntBASIC-0.68□□□□□ -2.52
HOXD3P31249 AC090616.4-201ENST00000448026 115 ntBASIC-0.68□□□□□ -2.52
HOXD3P31249 AC108019.1-201ENST00000512540 175 ntBASIC-0.68□□□□□ -2.52
HOXD3P31249 Y_RNA.543-201ENST00000384649 107 ntBASIC-0.69□□□□□ -2.52
HOXD3P31249 MIR507-201ENST00000385234 94 ntBASIC-0.69□□□□□ -2.52
HOXD3P31249 RPL35AP4-201ENST00000412007 102 ntBASIC-0.69□□□□□ -2.52
HOXD3P31249 MIR633-201ENST00000384821 98 ntBASIC-0.7□□□□□ -2.52
HOXD3P31249 RNU6-788P-201ENST00000390967 104 ntBASIC-0.7□□□□□ -2.52
HOXD3P31249 SNORA40.16-201ENST00000517238 121 ntBASIC-0.7□□□□□ -2.52
HOXD3P31249 MIR4490-201ENST00000582647 84 ntBASIC-0.7□□□□□ -2.52
HOXD3P31249 RNU6-79P-201ENST00000362511 107 ntBASIC-0.71□□□□□ -2.52
HOXD3P31249 RNU6-446P-201ENST00000362827 106 ntBASIC-0.71□□□□□ -2.52
HOXD3P31249 RNU7-119P-201ENST00000459279 63 ntBASIC-0.71□□□□□ -2.52
HOXD3P31249 Y_RNA.103-201ENST00000363171 102 ntBASIC-0.72□□□□□ -2.52
HOXD3P31249 RNU6-974P-201ENST00000384099 108 ntBASIC-0.73□□□□□ -2.53
HOXD3P31249 SNORA40B-201ENST00000385573 128 ntBASIC-0.73□□□□□ -2.53
HOXD3P31249 RNU6-1111P-201ENST00000391118 107 ntBASIC-0.73□□□□□ -2.53
HOXD3P31249 Y_RNA.564-201ENST00000384708 106 ntBASIC-0.74□□□□□ -2.53
HOXD3P31249 MIR125B1-201ENST00000385236 88 ntBASIC-0.74□□□□□ -2.53
HOXD3P31249 RNU6-258P-201ENST00000390884 101 ntBASIC-0.74□□□□□ -2.53
HOXD3P31249 RNU6ATAC32P-201ENST00000516026 76 ntBASIC-0.74□□□□□ -2.53
Retrieved 100 of 98,524 protein–RNA pairs in 13.6 ms