Protein–RNA interactions for Protein: P02461

COL3A1, Collagen alpha-1(III) chain, humanhuman

Predicted RBP Predictions only

Length 1,466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1P02461 RNU6-974P-201ENST00000384099 108 ntBASIC0.08□□□□□ -2.4
COL3A1P02461 SNORD38.3-201ENST00000516599 73 ntBASIC0.08□□□□□ -2.4
COL3A1P02461 SNORA18.1-201ENST00000363418 128 ntBASIC0.07□□□□□ -2.4
COL3A1P02461 SNORD114-12-201ENST00000365400 75 ntBASIC0.07□□□□□ -2.4
COL3A1P02461 MIR214-201ENST00000385214 110 ntBASIC0.07□□□□□ -2.4
COL3A1P02461 Y_RNA.583-201ENST00000391033 113 ntBASIC0.07□□□□□ -2.4
COL3A1P02461 SNORD19-201ENST00000391191 68 ntBASIC0.07□□□□□ -2.4
COL3A1P02461 Y_RNA.699-201ENST00000516803 93 ntBASIC0.07□□□□□ -2.4
COL3A1P02461 MIR548AL-201ENST00000578416 97 ntBASIC0.07□□□□□ -2.4
COL3A1P02461 MIR4290-201ENST00000583807 95 ntBASIC0.07□□□□□ -2.4
COL3A1P02461 SNORD114-28-201ENST00000363610 72 ntBASIC0.06□□□□□ -2.4
COL3A1P02461 MIR1295A-201ENST00000408463 79 ntBASIC0.06□□□□□ -2.4
COL3A1P02461 AC093726.3-201ENST00000637588 150 ntBASIC0.06□□□□□ -2.4
COL3A1P02461 MIR545-201ENST00000385085 106 ntBASIC0.05□□□□□ -2.4
COL3A1P02461 MTRNR2L9-201ENST00000622562 75 ntBASIC0.05□□□□□ -2.4
COL3A1P02461 SNORD114-16-201ENST00000363044 70 ntBASIC0.04□□□□□ -2.4
COL3A1P02461 SNORA27.2-201ENST00000363365 126 ntBASIC0.04□□□□□ -2.4
COL3A1P02461 SNORD115-33-201ENST00000363723 82 ntBASIC0.04□□□□□ -2.4
COL3A1P02461 MIR204-201ENST00000385200 110 ntBASIC0.04□□□□□ -2.4
COL3A1P02461 SNORA26.4-201ENST00000391188 123 ntBASIC0.03□□□□□ -2.4
COL3A1P02461 AL590491.3-201ENST00000610731 82 ntBASIC0.03□□□□□ -2.4
COL3A1P02461 RNU4-63P-201ENST00000411313 118 ntBASIC0.03□□□□□ -2.41
COL3A1P02461 AL353691.2-201ENST00000443795 59 ntBASIC0.03□□□□□ -2.41
COL3A1P02461 TRAJ28-201ENST00000390509 66 ntAPPRIS P1 BASIC0.02□□□□□ -2.41
COL3A1P02461 RNU6-530P-201ENST00000391180 107 ntBASIC0.02□□□□□ -2.41
COL3A1P02461 SNORA13-201ENST00000458790 133 ntBASIC0.02□□□□□ -2.41
COL3A1P02461 SNORD22.1-201ENST00000516331 125 ntBASIC0.02□□□□□ -2.41
COL3A1P02461 MIR5683-201ENST00000636514 76 ntBASIC0.02□□□□□ -2.41
COL3A1P02461 MIR29B1-201ENST00000385015 81 ntBASIC0.01□□□□□ -2.41
COL3A1P02461 MIR3666-201ENST00000607845 111 ntBASIC0.01□□□□□ -2.41
COL3A1P02461 MIR8064-201ENST00000612863 90 ntBASIC0.01□□□□□ -2.41
COL3A1P02461 RNU6-1204P-201ENST00000363948 107 ntBASIC0□□□□□ -2.41
COL3A1P02461 TRAJ54-201ENST00000390484 60 ntAPPRIS P1 BASIC0□□□□□ -2.41
COL3A1P02461 MIR4320-201ENST00000636981 65 ntBASIC0□□□□□ -2.41
COL3A1P02461 MIR520D-201ENST00000385002 87 ntBASIC-0.02□□□□□ -2.41
COL3A1P02461 RNU6-1250P-201ENST00000391218 107 ntBASIC-0.02□□□□□ -2.41
COL3A1P02461 SNORD4A-201ENST00000459174 72 ntBASIC-0.02□□□□□ -2.41
COL3A1P02461 Y_RNA.684-201ENST00000516510 99 ntBASIC-0.02□□□□□ -2.41
COL3A1P02461 RNA5SP169-201ENST00000517268 117 ntBASIC-0.02□□□□□ -2.41
COL3A1P02461 MIR3179-1-201ENST00000578940 84 ntBASIC-0.02□□□□□ -2.41
COL3A1P02461 MIR3179-2-201ENST00000579107 84 ntBASIC-0.02□□□□□ -2.41
COL3A1P02461 MIR3179-3-201ENST00000579566 84 ntBASIC-0.02□□□□□ -2.41
COL3A1P02461 MIR3179-4-201ENST00000617599 84 ntBASIC-0.02□□□□□ -2.41
COL3A1P02461 AP002795.1-201ENST00000534879 84 ntBASIC-0.03□□□□□ -2.41
COL3A1P02461 SNORD75.1-201ENST00000408373 60 ntBASIC-0.03□□□□□ -2.41
COL3A1P02461 AP000533.3-201ENST00000447704 118 ntBASIC-0.03□□□□□ -2.41
COL3A1P02461 MIR4788-201ENST00000639104 80 ntBASIC-0.03□□□□□ -2.41
COL3A1P02461 SNORD114-17-201ENST00000364699 75 ntBASIC-0.04□□□□□ -2.42
COL3A1P02461 MIR587-201ENST00000384845 96 ntBASIC-0.04□□□□□ -2.42
COL3A1P02461 RNU6-258P-201ENST00000390884 101 ntBASIC-0.04□□□□□ -2.42
COL3A1P02461 SNORA32.1-201ENST00000364514 115 ntBASIC-0.05□□□□□ -2.42
COL3A1P02461 RNA5SP300-201ENST00000391197 107 ntBASIC-0.05□□□□□ -2.42
COL3A1P02461 Y_RNA.189-201ENST00000363959 112 ntBASIC-0.06□□□□□ -2.42
COL3A1P02461 Y_RNA.228-201ENST00000364346 98 ntBASIC-0.06□□□□□ -2.42
COL3A1P02461 RNU6-742P-201ENST00000365289 107 ntBASIC-0.06□□□□□ -2.42
COL3A1P02461 RNU6-721P-201ENST00000410155 105 ntBASIC-0.06□□□□□ -2.42
COL3A1P02461 MIR378F-201ENST00000578143 78 ntBASIC-0.06□□□□□ -2.42
COL3A1P02461 MT-TQ-201ENST00000387372 72 ntBASIC-0.07□□□□□ -2.42
COL3A1P02461 Y_RNA.55-201ENST00000362797 102 ntBASIC-0.08□□□□□ -2.42
COL3A1P02461 RNU6-361P-201ENST00000364454 107 ntBASIC-0.08□□□□□ -2.42
COL3A1P02461 RNU6-608P-201ENST00000383927 104 ntBASIC-0.08□□□□□ -2.42
COL3A1P02461 MIR4317-201ENST00000637586 65 ntBASIC-0.08□□□□□ -2.42
COL3A1P02461 MIR365A-201ENST00000362260 87 ntBASIC-0.09□□□□□ -2.42
COL3A1P02461 MIR23C-201ENST00000579846 100 ntBASIC-0.09□□□□□ -2.42
COL3A1P02461 MIR3681-201ENST00000580089 72 ntBASIC-0.09□□□□□ -2.42
COL3A1P02461 RNU6-822P-201ENST00000362707 106 ntBASIC-0.1□□□□□ -2.42
COL3A1P02461 RNU6-986P-201ENST00000363133 102 ntBASIC-0.1□□□□□ -2.42
COL3A1P02461 AC021146.6-201ENST00000514659 117 ntBASIC-0.1□□□□□ -2.42
COL3A1P02461 RNU6-176P-201ENST00000517196 105 ntBASIC-0.1□□□□□ -2.42
COL3A1P02461 RNY4P27-201ENST00000363341 96 ntBASIC-0.1□□□□□ -2.43
COL3A1P02461 MIR507-201ENST00000385234 94 ntBASIC-0.1□□□□□ -2.43
COL3A1P02461 AC020913.3-201ENST00000594678 125 ntTSL 3 BASIC-0.1□□□□□ -2.43
COL3A1P02461 MIR4426-201ENST00000640330 63 ntBASIC-0.1□□□□□ -2.43
COL3A1P02461 SNORD114-11-201ENST00000363738 75 ntBASIC-0.11□□□□□ -2.43
COL3A1P02461 SNORD60-201ENST00000383903 83 ntBASIC-0.11□□□□□ -2.43
COL3A1P02461 SNORA17.4-201ENST00000391287 132 ntBASIC-0.11□□□□□ -2.43
COL3A1P02461 RNY4P7-201ENST00000364600 96 ntBASIC-0.13□□□□□ -2.43
COL3A1P02461 Y_RNA.603-201ENST00000410571 108 ntBASIC-0.13□□□□□ -2.43
COL3A1P02461 Y_RNA.204-201ENST00000364112 102 ntBASIC-0.14□□□□□ -2.43
COL3A1P02461 RNU6-300P-201ENST00000459080 104 ntBASIC-0.14□□□□□ -2.43
COL3A1P02461 MIR202-201ENST00000362219 110 ntBASIC-0.15□□□□□ -2.43
COL3A1P02461 RNU6-10P-201ENST00000384036 107 ntBASIC-0.15□□□□□ -2.43
COL3A1P02461 SNORA32.3-201ENST00000384772 121 ntBASIC-0.15□□□□□ -2.43
COL3A1P02461 RNY3P8-201ENST00000411366 126 ntBASIC-0.15□□□□□ -2.43
COL3A1P02461 RPL35AP4-201ENST00000412007 102 ntBASIC-0.15□□□□□ -2.43
COL3A1P02461 MIR4441-201ENST00000582623 100 ntBASIC-0.15□□□□□ -2.43
COL3A1P02461 Y_RNA.181-201ENST00000363872 101 ntBASIC-0.16□□□□□ -2.43
COL3A1P02461 Y_RNA.484-201ENST00000384389 103 ntBASIC-0.16□□□□□ -2.43
COL3A1P02461 MIR548H4-201ENST00000408689 111 ntBASIC-0.16□□□□□ -2.43
COL3A1P02461 RNA5SP275-201ENST00000363936 118 ntBASIC-0.16□□□□□ -2.44
COL3A1P02461 RNU6-320P-201ENST00000516511 106 ntBASIC-0.16□□□□□ -2.44
COL3A1P02461 RNU6-1047P-201ENST00000364418 107 ntBASIC-0.17□□□□□ -2.44
COL3A1P02461 RNU6-1008P-201ENST00000384160 104 ntBASIC-0.17□□□□□ -2.44
COL3A1P02461 RNA5SP461-201ENST00000516451 104 ntBASIC-0.17□□□□□ -2.44
COL3A1P02461 MIR548AZ-201ENST00000616567 95 ntBASIC-0.17□□□□□ -2.44
COL3A1P02461 MIR1285-2-201ENST00000408311 88 ntBASIC-0.18□□□□□ -2.44
COL3A1P02461 ST7-OT3_1.1-201ENST00000619607 74 ntBASIC-0.18□□□□□ -2.44
COL3A1P02461 MIR6738-201ENST00000619620 64 ntBASIC-0.18□□□□□ -2.44
COL3A1P02461 RNU6-1326P-201ENST00000391262 107 ntBASIC-0.2□□□□□ -2.44
COL3A1P02461 AC090616.4-201ENST00000448026 115 ntBASIC-0.2□□□□□ -2.44
Retrieved 100 of 98,524 protein–RNA pairs in 11.3 ms