Protein–RNA interactions for Protein: O95639

CPSF4, Cleavage and polyadenylation specificity factor subunit 4, humanhuman

Known RBP Predictions only

Length 269 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4O95639 Y_RNA.313-201ENST00000365095 103 ntBASIC-1.61□□□□□ -2.67
CPSF4O95639 RNU6-979P-201ENST00000383896 107 ntBASIC-1.61□□□□□ -2.67
CPSF4O95639 RNU6-995P-201ENST00000391244 107 ntBASIC-1.61□□□□□ -2.67
CPSF4O95639 VTRNA2-1-201ENST00000602301 127 ntBASIC-1.61□□□□□ -2.67
CPSF4O95639 Y_RNA.53-201ENST00000362765 102 ntBASIC-1.62□□□□□ -2.67
CPSF4O95639 RNU6-49P-201ENST00000384256 107 ntBASIC-1.62□□□□□ -2.67
CPSF4O95639 RNU6-695P-201ENST00000391157 104 ntBASIC-1.62□□□□□ -2.67
CPSF4O95639 RNU7-151P-201ENST00000516930 53 ntBASIC-1.62□□□□□ -2.67
CPSF4O95639 RNA5SP405-201ENST00000363059 114 ntBASIC-1.63□□□□□ -2.67
CPSF4O95639 Y_RNA.175-201ENST00000363794 111 ntBASIC-1.63□□□□□ -2.67
CPSF4O95639 RNU6-215P-201ENST00000365169 102 ntBASIC-1.63□□□□□ -2.67
CPSF4O95639 RNU6-895P-201ENST00000384125 103 ntBASIC-1.63□□□□□ -2.67
CPSF4O95639 SNORD116-24-201ENST00000384549 92 ntBASIC-1.63□□□□□ -2.67
CPSF4O95639 SNORD20-201ENST00000384550 80 ntBASIC-1.63□□□□□ -2.67
CPSF4O95639 MIR154-201ENST00000385243 84 ntBASIC-1.63□□□□□ -2.67
CPSF4O95639 RNU6-70P-201ENST00000516438 60 ntBASIC-1.63□□□□□ -2.67
CPSF4O95639 RNU6-919P-201ENST00000516731 104 ntBASIC-1.63□□□□□ -2.67
CPSF4O95639 Y_RNA.204-201ENST00000364112 102 ntBASIC-1.64□□□□□ -2.67
CPSF4O95639 MIR579-201ENST00000385221 98 ntBASIC-1.64□□□□□ -2.67
CPSF4O95639 AL606753.1-201ENST00000427435 87 ntBASIC-1.64□□□□□ -2.67
CPSF4O95639 MIR4712-201ENST00000583750 82 ntBASIC-1.64□□□□□ -2.67
CPSF4O95639 ST7-OT3_1.1-201ENST00000619607 74 ntBASIC-1.64□□□□□ -2.67
CPSF4O95639 RNU6-172P-201ENST00000411000 93 ntBASIC-1.65□□□□□ -2.67
CPSF4O95639 Y_RNA.781-201ENST00000620301 103 ntBASIC-1.65□□□□□ -2.67
CPSF4O95639 MTRNR2L9-201ENST00000622562 75 ntBASIC-1.65□□□□□ -2.67
CPSF4O95639 Y_RNA.103-201ENST00000363171 102 ntBASIC-1.66□□□□□ -2.68
CPSF4O95639 RNU7-171P-201ENST00000459581 62 ntBASIC-1.66□□□□□ -2.68
CPSF4O95639 SNORD63.2-201ENST00000516303 64 ntBASIC-1.66□□□□□ -2.68
CPSF4O95639 MIR1245B-201ENST00000636115 69 ntBASIC-1.66□□□□□ -2.68
CPSF4O95639 CR2-207ENST00000640301 151 ntTSL 1 (best) BASIC-1.66□□□□□ -2.68
CPSF4O95639 SNORA27.2-201ENST00000363365 126 ntBASIC-1.67□□□□□ -2.68
CPSF4O95639 Y_RNA.211-201ENST00000364164 101 ntBASIC-1.67□□□□□ -2.68
CPSF4O95639 RNU6-669P-201ENST00000365575 107 ntBASIC-1.67□□□□□ -2.68
CPSF4O95639 MIR7978-201ENST00000636158 59 ntBASIC-1.67□□□□□ -2.68
CPSF4O95639 RNU6-194P-201ENST00000363862 105 ntBASIC-1.68□□□□□ -2.68
CPSF4O95639 SNORD115-31-201ENST00000365318 82 ntBASIC-1.68□□□□□ -2.68
CPSF4O95639 RNA5SP89-201ENST00000410300 108 ntBASIC-1.69□□□□□ -2.68
CPSF4O95639 RNU6-789P-201ENST00000517105 102 ntBASIC-1.69□□□□□ -2.68
CPSF4O95639 MIR125B1-201ENST00000385236 88 ntBASIC-1.7□□□□□ -2.68
CPSF4O95639 MIR3123-201ENST00000583417 75 ntBASIC-1.7□□□□□ -2.68
CPSF4O95639 Y_RNA.788-201ENST00000622394 112 ntBASIC-1.7□□□□□ -2.68
CPSF4O95639 Y_RNA.94-201ENST00000363068 106 ntBASIC-1.71□□□□□ -2.68
CPSF4O95639 RNU6-44P-201ENST00000384045 107 ntBASIC-1.71□□□□□ -2.68
CPSF4O95639 MIR3134-201ENST00000579433 74 ntBASIC-1.71□□□□□ -2.68
CPSF4O95639 AC013734.1-201ENST00000619329 111 ntBASIC-1.71□□□□□ -2.68
CPSF4O95639 TARS-215ENST00000626210 201 ntTSL 5 BASIC-1.71□□□□□ -2.68
CPSF4O95639 RNU6-523P-201ENST00000516304 54 ntBASIC-1.72□□□□□ -2.68
CPSF4O95639 RNU6-542P-201ENST00000516405 103 ntBASIC-1.72□□□□□ -2.68
CPSF4O95639 RNY4-201ENST00000516507 96 ntBASIC-1.72□□□□□ -2.68
CPSF4O95639 AC005520.4-201ENST00000604337 90 ntBASIC-1.72□□□□□ -2.68
CPSF4O95639 RNU6-92P-201ENST00000605893 104 ntBASIC-1.72□□□□□ -2.68
CPSF4O95639 Y_RNA.291-201ENST00000364886 113 ntBASIC-1.73□□□□□ -2.69
CPSF4O95639 RNU6-841P-201ENST00000383872 107 ntBASIC-1.73□□□□□ -2.69
CPSF4O95639 RNU6-687P-201ENST00000516443 89 ntBASIC-1.73□□□□□ -2.69
CPSF4O95639 MIR494-201ENST00000349529 81 ntBASIC-1.74□□□□□ -2.69
CPSF4O95639 RNU6-1306P-201ENST00000365219 99 ntBASIC-1.74□□□□□ -2.69
CPSF4O95639 RNU6-1034P-201ENST00000365335 101 ntBASIC-1.74□□□□□ -2.69
CPSF4O95639 RNU6-242P-201ENST00000384359 107 ntBASIC-1.74□□□□□ -2.69
CPSF4O95639 TRAJ9-201ENST00000390528 61 ntAPPRIS P1 BASIC-1.74□□□□□ -2.69
CPSF4O95639 RNY4P30-201ENST00000410216 95 ntBASIC-1.74□□□□□ -2.69
CPSF4O95639 RNU6-1191P-201ENST00000516799 107 ntBASIC-1.74□□□□□ -2.69
CPSF4O95639 MIR548AI-201ENST00000579940 88 ntBASIC-1.74□□□□□ -2.69
CPSF4O95639 RNU6-974P-201ENST00000384099 108 ntBASIC-1.75□□□□□ -2.69
CPSF4O95639 Y_RNA.449-201ENST00000384187 102 ntBASIC-1.75□□□□□ -2.69
CPSF4O95639 Y_RNA.321-201ENST00000365149 102 ntBASIC-1.76□□□□□ -2.69
CPSF4O95639 RNU6-1276P-201ENST00000365372 104 ntBASIC-1.76□□□□□ -2.69
CPSF4O95639 RNY3P8-201ENST00000411366 126 ntBASIC-1.76□□□□□ -2.69
CPSF4O95639 U6.97-201ENST00000636904 101 ntBASIC-1.76□□□□□ -2.69
CPSF4O95639 Y_RNA.139-201ENST00000363464 102 ntBASIC-1.77□□□□□ -2.69
CPSF4O95639 MIR4666B-201ENST00000578142 81 ntBASIC-1.77□□□□□ -2.69
CPSF4O95639 MIR548AM-201ENST00000584298 74 ntBASIC-1.77□□□□□ -2.69
CPSF4O95639 SNORD60.1-201ENST00000362451 73 ntBASIC-1.78□□□□□ -2.69
CPSF4O95639 RNU6ATAC17P-201ENST00000516074 71 ntBASIC-1.78□□□□□ -2.69
CPSF4O95639 RNU7-160P-201ENST00000516660 62 ntBASIC-1.78□□□□□ -2.69
CPSF4O95639 MIR450A2-201ENST00000385022 100 ntBASIC-1.79□□□□□ -2.7
CPSF4O95639 MIR7110-201ENST00000612638 86 ntBASIC-1.79□□□□□ -2.7
CPSF4O95639 Y_RNA.69-201ENST00000362885 109 ntBASIC-1.8□□□□□ -2.7
CPSF4O95639 RNU6-411P-201ENST00000384451 107 ntBASIC-1.8□□□□□ -2.7
CPSF4O95639 Y_RNA.591-201ENST00000410228 104 ntBASIC-1.8□□□□□ -2.7
CPSF4O95639 AL078612.1-201ENST00000533009 150 ntTSL 5 BASIC-1.8□□□□□ -2.7
CPSF4O95639 SNORD19B.1-201ENST00000630615 80 ntBASIC-1.8□□□□□ -2.7
CPSF4O95639 RNU4-88P-201ENST00000411220 86 ntBASIC-1.81□□□□□ -2.7
CPSF4O95639 RNU6-810P-201ENST00000364001 107 ntBASIC-1.82□□□□□ -2.7
CPSF4O95639 RNU6-828P-201ENST00000364876 107 ntBASIC-1.82□□□□□ -2.7
CPSF4O95639 RNU6-787P-201ENST00000384032 107 ntBASIC-1.82□□□□□ -2.7
CPSF4O95639 RNU6-520P-201ENST00000384717 104 ntBASIC-1.82□□□□□ -2.7
CPSF4O95639 AL603908.1-201ENST00000406098 201 ntBASIC-1.82□□□□□ -2.7
CPSF4O95639 RNU6-1015P-201ENST00000517121 99 ntBASIC-1.82□□□□□ -2.7
CPSF4O95639 RNU6-231P-201ENST00000517122 103 ntBASIC-1.82□□□□□ -2.7
CPSF4O95639 Y_RNA.186-201ENST00000363899 92 ntBASIC-1.84□□□□□ -2.7
CPSF4O95639 RNU6-153P-201ENST00000364422 104 ntBASIC-1.84□□□□□ -2.7
CPSF4O95639 RNU6-294P-201ENST00000364999 102 ntBASIC-1.84□□□□□ -2.7
CPSF4O95639 Y_RNA.443-201ENST00000384135 111 ntBASIC-1.84□□□□□ -2.7
CPSF4O95639 SNORD116.2-201ENST00000391251 93 ntBASIC-1.84□□□□□ -2.7
CPSF4O95639 U7.4-201ENST00000614961 63 ntBASIC-1.85□□□□□ -2.71
CPSF4O95639 SNORD18C-201ENST00000362704 69 ntBASIC-1.86□□□□□ -2.71
CPSF4O95639 RNU6-634P-201ENST00000459134 106 ntBASIC-1.86□□□□□ -2.71
CPSF4O95639 Y_RNA.694-201ENST00000516677 117 ntBASIC-1.86□□□□□ -2.71
CPSF4O95639 RNU6-663P-201ENST00000391105 106 ntBASIC-1.87□□□□□ -2.71
CPSF4O95639 MIR202-201ENST00000362219 110 ntBASIC-1.88□□□□□ -2.71
Retrieved 100 of 98,524 protein–RNA pairs in 230.2 ms