Protein–RNA interactions for Protein: Q9Y6I4

USP3, Ubiquitin carboxyl-terminal hydrolase 3, humanhuman

Predictions only

Length 520 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP3Q9Y6I4 MIR4514-201ENST00000581410 57 ntBASIC0.24□□□□□ -2.37
USP3Q9Y6I4 MIR329-2-201ENST00000385029 84 ntBASIC0.23□□□□□ -2.37
USP3Q9Y6I4 SNORD114-5-201ENST00000362928 70 ntBASIC0.22□□□□□ -2.37
USP3Q9Y6I4 SNORD56B-201ENST00000384713 71 ntBASIC0.22□□□□□ -2.37
USP3Q9Y6I4 RNU4-88P-201ENST00000411220 86 ntBASIC0.22□□□□□ -2.37
USP3Q9Y6I4 RNU7-88P-201ENST00000458752 63 ntBASIC0.22□□□□□ -2.37
USP3Q9Y6I4 MIR5704-201ENST00000584029 77 ntBASIC0.22□□□□□ -2.37
USP3Q9Y6I4 MIR655-201ENST00000362159 97 ntBASIC0.21□□□□□ -2.38
USP3Q9Y6I4 RNA5SP285-201ENST00000516619 119 ntBASIC0.21□□□□□ -2.38
USP3Q9Y6I4 MIR5093-201ENST00000583199 100 ntBASIC0.21□□□□□ -2.38
USP3Q9Y6I4 SNORD49B-201ENST00000365172 72 ntBASIC0.2□□□□□ -2.38
USP3Q9Y6I4 HOTAIR_3.1-201ENST00000611352 97 ntBASIC0.2□□□□□ -2.38
USP3Q9Y6I4 MIR8068-201ENST00000618032 68 ntBASIC0.2□□□□□ -2.38
USP3Q9Y6I4 RNU6-1267P-201ENST00000410747 107 ntBASIC0.19□□□□□ -2.38
USP3Q9Y6I4 RNU6-732P-201ENST00000516033 103 ntBASIC0.19□□□□□ -2.38
USP3Q9Y6I4 MIR1295B-201ENST00000636144 60 ntBASIC0.19□□□□□ -2.38
USP3Q9Y6I4 SNORD45.2-201ENST00000363552 72 ntBASIC0.18□□□□□ -2.38
USP3Q9Y6I4 SNORD74.6-201ENST00000364796 70 ntBASIC0.18□□□□□ -2.38
USP3Q9Y6I4 RNU6ATAC4P-201ENST00000387446 126 ntBASIC0.18□□□□□ -2.38
USP3Q9Y6I4 AC114755.3-201ENST00000481111 251 ntBASIC0.17□□□□□ -2.38
USP3Q9Y6I4 RNU6-1238P-201ENST00000517215 102 ntBASIC0.17□□□□□ -2.38
USP3Q9Y6I4 RNU6-1233P-201ENST00000362922 102 ntBASIC0.16□□□□□ -2.38
USP3Q9Y6I4 Y_RNA.321-201ENST00000365149 102 ntBASIC0.16□□□□□ -2.38
USP3Q9Y6I4 RNU6-929P-201ENST00000384429 107 ntBASIC0.16□□□□□ -2.38
USP3Q9Y6I4 MIR1295A-201ENST00000408463 79 ntBASIC0.16□□□□□ -2.38
USP3Q9Y6I4 MIR4768-201ENST00000585270 74 ntBASIC0.16□□□□□ -2.38
USP3Q9Y6I4 MIR6718-201ENST00000616153 80 ntBASIC0.16□□□□□ -2.38
USP3Q9Y6I4 MIR124-2-201ENST00000385081 109 ntBASIC0.15□□□□□ -2.39
USP3Q9Y6I4 MIR4263-201ENST00000584745 83 ntBASIC0.15□□□□□ -2.39
USP3Q9Y6I4 MIR371B-201ENST00000638082 66 ntBASIC0.15□□□□□ -2.39
USP3Q9Y6I4 RNU6-35P-201ENST00000384530 107 ntBASIC0.14□□□□□ -2.39
USP3Q9Y6I4 AL451105.1-201ENST00000450005 189 ntBASIC0.14□□□□□ -2.39
USP3Q9Y6I4 MIR4280-201ENST00000582178 76 ntBASIC0.14□□□□□ -2.39
USP3Q9Y6I4 MIR4290-201ENST00000583807 95 ntBASIC0.14□□□□□ -2.39
USP3Q9Y6I4 MIR6851-201ENST00000617060 67 ntBASIC0.14□□□□□ -2.39
USP3Q9Y6I4 RNA5SP66-201ENST00000517178 101 ntBASIC0.13□□□□□ -2.39
USP3Q9Y6I4 RNU6-247P-201ENST00000362636 107 ntBASIC0.12□□□□□ -2.39
USP3Q9Y6I4 RNU6-930P-201ENST00000390938 100 ntBASIC0.12□□□□□ -2.39
USP3Q9Y6I4 RNU6-1111P-201ENST00000391118 107 ntBASIC0.12□□□□□ -2.39
USP3Q9Y6I4 SNORA18.1-201ENST00000363418 128 ntBASIC0.11□□□□□ -2.39
USP3Q9Y6I4 AL445193.1-201ENST00000441183 141 ntBASIC0.11□□□□□ -2.39
USP3Q9Y6I4 RNU6-838P-201ENST00000363399 108 ntBASIC0.1□□□□□ -2.39
USP3Q9Y6I4 DLEU2_4.2-201ENST00000616613 58 ntBASIC0.1□□□□□ -2.39
USP3Q9Y6I4 AC093726.3-201ENST00000637588 150 ntBASIC0.1□□□□□ -2.39
USP3Q9Y6I4 SNORA13-201ENST00000458790 133 ntBASIC0.09□□□□□ -2.4
USP3Q9Y6I4 MIR3170-201ENST00000582699 77 ntBASIC0.09□□□□□ -2.4
USP3Q9Y6I4 MIR2909-201ENST00000617113 69 ntBASIC0.09□□□□□ -2.4
USP3Q9Y6I4 Y_RNA.139-201ENST00000363464 102 ntBASIC0.08□□□□□ -2.4
USP3Q9Y6I4 RNU6ATAC11P-201ENST00000408541 125 ntBASIC0.07□□□□□ -2.4
USP3Q9Y6I4 MIR5190-201ENST00000581537 80 ntBASIC0.07□□□□□ -2.4
USP3Q9Y6I4 Y_RNA.185-201ENST00000363894 100 ntBASIC0.05□□□□□ -2.4
USP3Q9Y6I4 MIR518B-201ENST00000385127 83 ntBASIC0.05□□□□□ -2.4
USP3Q9Y6I4 MIR3666-201ENST00000607845 111 ntBASIC0.05□□□□□ -2.4
USP3Q9Y6I4 AL590491.3-201ENST00000610731 82 ntBASIC0.05□□□□□ -2.4
USP3Q9Y6I4 MTRNR2L9-201ENST00000622562 75 ntBASIC0.05□□□□□ -2.4
USP3Q9Y6I4 MIR548Q-201ENST00000408404 100 ntBASIC0.04□□□□□ -2.4
USP3Q9Y6I4 SNORD38.3-201ENST00000516599 73 ntBASIC0.04□□□□□ -2.4
USP3Q9Y6I4 MIR6086-201ENST00000638065 55 ntBASIC0.04□□□□□ -2.4
USP3Q9Y6I4 TRAJ28-201ENST00000390509 66 ntAPPRIS P1 BASIC0.03□□□□□ -2.4
USP3Q9Y6I4 SNORD18.2-201ENST00000459604 70 ntBASIC0.03□□□□□ -2.4
USP3Q9Y6I4 SNORD63.2-201ENST00000516303 64 ntBASIC0.03□□□□□ -2.4
USP3Q9Y6I4 MIR6759-201ENST00000638110 65 ntBASIC0.03□□□□□ -2.4
USP3Q9Y6I4 MIR4667-201ENST00000578933 66 ntBASIC0.02□□□□□ -2.41
USP3Q9Y6I4 SNORD114-16-201ENST00000363044 70 ntBASIC0.01□□□□□ -2.41
USP3Q9Y6I4 SNORA26.4-201ENST00000391188 123 ntBASIC0.01□□□□□ -2.41
USP3Q9Y6I4 MIR548F3-201ENST00000408509 87 ntBASIC0.01□□□□□ -2.41
USP3Q9Y6I4 HAR1A.1-201ENST00000459583 118 ntBASIC0.01□□□□□ -2.41
USP3Q9Y6I4 SNORD115-33-201ENST00000363723 82 ntBASIC0□□□□□ -2.41
USP3Q9Y6I4 SNORD114-12-201ENST00000365400 75 ntBASIC0□□□□□ -2.41
USP3Q9Y6I4 IGLVI-20-201ENST00000519296 130 ntBASIC0□□□□□ -2.41
USP3Q9Y6I4 TRAJ54-201ENST00000390484 60 ntAPPRIS P1 BASIC-0.01□□□□□ -2.41
USP3Q9Y6I4 AL353691.2-201ENST00000443795 59 ntBASIC-0.01□□□□□ -2.41
USP3Q9Y6I4 MIR5589-201ENST00000579442 60 ntBASIC-0.01□□□□□ -2.41
USP3Q9Y6I4 SNORD19-201ENST00000391191 68 ntBASIC-0.02□□□□□ -2.41
USP3Q9Y6I4 RNU6-1250P-201ENST00000391218 107 ntBASIC-0.02□□□□□ -2.41
USP3Q9Y6I4 MIR1468-201ENST00000410600 86 ntBASIC-0.02□□□□□ -2.41
USP3Q9Y6I4 RNA5SP476-201ENST00000516613 103 ntBASIC-0.02□□□□□ -2.41
USP3Q9Y6I4 SNORD75.1-201ENST00000408373 60 ntBASIC-0.03□□□□□ -2.41
USP3Q9Y6I4 SNORD4A-201ENST00000459174 72 ntBASIC-0.03□□□□□ -2.41
USP3Q9Y6I4 Y_RNA.699-201ENST00000516803 93 ntBASIC-0.03□□□□□ -2.41
USP3Q9Y6I4 MIR548AL-201ENST00000578416 97 ntBASIC-0.03□□□□□ -2.41
USP3Q9Y6I4 SNORA27.2-201ENST00000363365 126 ntBASIC-0.04□□□□□ -2.42
USP3Q9Y6I4 SNORD114-31-201ENST00000363219 75 ntBASIC-0.05□□□□□ -2.42
USP3Q9Y6I4 MIR204-201ENST00000385200 110 ntBASIC-0.05□□□□□ -2.42
USP3Q9Y6I4 Z95118.1-201ENST00000421372 247 ntBASIC-0.05□□□□□ -2.42
USP3Q9Y6I4 SNORD22.1-201ENST00000516331 125 ntBASIC-0.05□□□□□ -2.42
USP3Q9Y6I4 MIR4636-201ENST00000582271 80 ntBASIC-0.05□□□□□ -2.42
USP3Q9Y6I4 MIR5683-201ENST00000636514 76 ntBASIC-0.07□□□□□ -2.42
USP3Q9Y6I4 RNU6-974P-201ENST00000384099 108 ntBASIC-0.08□□□□□ -2.42
USP3Q9Y6I4 RNA5SP300-201ENST00000391197 107 ntBASIC-0.08□□□□□ -2.42
USP3Q9Y6I4 snoU13.19-201ENST00000459148 104 ntBASIC-0.08□□□□□ -2.42
USP3Q9Y6I4 RNA5SP169-201ENST00000517268 117 ntBASIC-0.08□□□□□ -2.42
USP3Q9Y6I4 MIR3179-1-201ENST00000578940 84 ntBASIC-0.09□□□□□ -2.42
USP3Q9Y6I4 MIR3179-2-201ENST00000579107 84 ntBASIC-0.09□□□□□ -2.42
USP3Q9Y6I4 MIR3179-3-201ENST00000579566 84 ntBASIC-0.09□□□□□ -2.42
USP3Q9Y6I4 MIR3179-4-201ENST00000617599 84 ntBASIC-0.09□□□□□ -2.42
USP3Q9Y6I4 MIR4788-201ENST00000639104 80 ntBASIC-0.09□□□□□ -2.42
USP3Q9Y6I4 SNORD114-11-201ENST00000363738 75 ntBASIC-0.1□□□□□ -2.43
USP3Q9Y6I4 AP002795.1-201ENST00000534879 84 ntBASIC-0.1□□□□□ -2.43
USP3Q9Y6I4 MIR29B1-201ENST00000385015 81 ntBASIC-0.11□□□□□ -2.43
Retrieved 100 of 98,524 protein–RNA pairs in 366.5 ms