Protein–RNA interactions for Protein: Q9UPQ0

LIMCH1, LIM and calponin homology domains-containing protein 1, humanhuman

Predictions only

Length 1,083 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1Q9UPQ0 MIR4723-201ENST00000585070 81 ntBASIC-0.26□□□□□ -2.45
LIMCH1Q9UPQ0 RNU6-924P-201ENST00000362926 108 ntBASIC-0.27□□□□□ -2.45
LIMCH1Q9UPQ0 Y_RNA.386-201ENST00000383913 105 ntBASIC-0.27□□□□□ -2.45
LIMCH1Q9UPQ0 TRAJ9-201ENST00000390528 61 ntAPPRIS P1 BASIC-0.27□□□□□ -2.45
LIMCH1Q9UPQ0 MIR1468-201ENST00000410600 86 ntBASIC-0.27□□□□□ -2.45
LIMCH1Q9UPQ0 SNX3P1X-201ENST00000414887 175 ntBASIC-0.27□□□□□ -2.45
LIMCH1Q9UPQ0 SNORD38.3-201ENST00000516599 73 ntBASIC-0.27□□□□□ -2.45
LIMCH1Q9UPQ0 RNU6-92P-201ENST00000605893 104 ntBASIC-0.27□□□□□ -2.45
LIMCH1Q9UPQ0 RNU6-590P-201ENST00000365039 107 ntBASIC-0.28□□□□□ -2.45
LIMCH1Q9UPQ0 RNU6-471P-201ENST00000383944 106 ntBASIC-0.28□□□□□ -2.45
LIMCH1Q9UPQ0 MIR518B-201ENST00000385127 83 ntBASIC-0.28□□□□□ -2.45
LIMCH1Q9UPQ0 MIR204-201ENST00000385200 110 ntBASIC-0.29□□□□□ -2.46
LIMCH1Q9UPQ0 MIR429-201ENST00000362106 83 ntBASIC-0.3□□□□□ -2.46
LIMCH1Q9UPQ0 SNORD114-11-201ENST00000363738 75 ntBASIC-0.3□□□□□ -2.46
LIMCH1Q9UPQ0 SNORA32.3-201ENST00000384772 121 ntBASIC-0.3□□□□□ -2.46
LIMCH1Q9UPQ0 MIR124-2-201ENST00000385081 109 ntBASIC-0.3□□□□□ -2.46
LIMCH1Q9UPQ0 SNORA25.5-201ENST00000363782 126 ntBASIC-0.31□□□□□ -2.46
LIMCH1Q9UPQ0 Y_RNA.236-201ENST00000364427 111 ntBASIC-0.31□□□□□ -2.46
LIMCH1Q9UPQ0 MIR196A2-201ENST00000385189 110 ntBASIC-0.31□□□□□ -2.46
LIMCH1Q9UPQ0 SNORD75.1-201ENST00000408373 60 ntBASIC-0.31□□□□□ -2.46
LIMCH1Q9UPQ0 RNU4-63P-201ENST00000411313 118 ntBASIC-0.31□□□□□ -2.46
LIMCH1Q9UPQ0 SNORA13-201ENST00000458790 133 ntBASIC-0.31□□□□□ -2.46
LIMCH1Q9UPQ0 AC139453.2-201ENST00000487255 133 ntBASIC-0.31□□□□□ -2.46
LIMCH1Q9UPQ0 RNU6-458P-201ENST00000384179 107 ntBASIC-0.33□□□□□ -2.46
LIMCH1Q9UPQ0 SNORA41B-201ENST00000384785 128 ntBASIC-0.33□□□□□ -2.46
LIMCH1Q9UPQ0 Y_RNA.613-201ENST00000410726 97 ntBASIC-0.33□□□□□ -2.46
LIMCH1Q9UPQ0 Y_RNA.696-201ENST00000516725 107 ntBASIC-0.33□□□□□ -2.46
LIMCH1Q9UPQ0 MIR3681-201ENST00000580089 72 ntBASIC-0.33□□□□□ -2.46
LIMCH1Q9UPQ0 U6.58-201ENST00000613107 107 ntBASIC-0.33□□□□□ -2.46
LIMCH1Q9UPQ0 MIR548AZ-201ENST00000616567 95 ntBASIC-0.33□□□□□ -2.46
LIMCH1Q9UPQ0 Y_RNA.109-201ENST00000363215 102 ntBASIC-0.34□□□□□ -2.46
LIMCH1Q9UPQ0 SNORD116-16-201ENST00000384533 92 ntBASIC-0.34□□□□□ -2.46
LIMCH1Q9UPQ0 RNU6-246P-201ENST00000384702 107 ntBASIC-0.34□□□□□ -2.46
LIMCH1Q9UPQ0 SNORD126-201ENST00000459475 77 ntBASIC-0.35□□□□□ -2.47
LIMCH1Q9UPQ0 RNA5SP169-201ENST00000517268 117 ntBASIC-0.35□□□□□ -2.47
LIMCH1Q9UPQ0 SNORD60.1-201ENST00000362451 73 ntBASIC-0.36□□□□□ -2.47
LIMCH1Q9UPQ0 RNA5SP192-201ENST00000364404 120 ntBASIC-0.36□□□□□ -2.47
LIMCH1Q9UPQ0 SNORD14C-201ENST00000365382 88 ntBASIC-0.36□□□□□ -2.47
LIMCH1Q9UPQ0 SNORD18.2-201ENST00000459604 70 ntBASIC-0.36□□□□□ -2.47
LIMCH1Q9UPQ0 SNORD22.1-201ENST00000516331 125 ntBASIC-0.36□□□□□ -2.47
LIMCH1Q9UPQ0 RNU6-940P-201ENST00000363433 104 ntBASIC-0.37□□□□□ -2.47
LIMCH1Q9UPQ0 AC110620.1-201ENST00000416042 228 ntBASIC-0.37□□□□□ -2.47
LIMCH1Q9UPQ0 AC125388.1-201ENST00000459631 156 ntBASIC-0.37□□□□□ -2.47
LIMCH1Q9UPQ0 Y_RNA.391-201ENST00000383933 94 ntBASIC-0.38□□□□□ -2.47
LIMCH1Q9UPQ0 MT-TQ-201ENST00000387372 72 ntBASIC-0.38□□□□□ -2.47
LIMCH1Q9UPQ0 RNU6-122P-201ENST00000516818 107 ntBASIC-0.38□□□□□ -2.47
LIMCH1Q9UPQ0 U7.5-201ENST00000517224 61 ntBASIC-0.38□□□□□ -2.47
LIMCH1Q9UPQ0 MIR3179-1-201ENST00000578940 84 ntBASIC-0.38□□□□□ -2.47
LIMCH1Q9UPQ0 MIR3179-2-201ENST00000579107 84 ntBASIC-0.38□□□□□ -2.47
LIMCH1Q9UPQ0 MIR3179-3-201ENST00000579566 84 ntBASIC-0.38□□□□□ -2.47
LIMCH1Q9UPQ0 MIR3179-4-201ENST00000617599 84 ntBASIC-0.38□□□□□ -2.47
LIMCH1Q9UPQ0 Y_RNA.340-201ENST00000365330 92 ntBASIC-0.39□□□□□ -2.47
LIMCH1Q9UPQ0 Y_RNA.514-201ENST00000384528 112 ntBASIC-0.39□□□□□ -2.47
LIMCH1Q9UPQ0 RNU6-1250P-201ENST00000391218 107 ntBASIC-0.39□□□□□ -2.47
LIMCH1Q9UPQ0 TRAJ42-201ENST00000390495 66 ntAPPRIS P1 BASIC-0.4□□□□□ -2.47
LIMCH1Q9UPQ0 AC021146.6-201ENST00000514659 117 ntBASIC-0.41□□□□□ -2.48
LIMCH1Q9UPQ0 Y_RNA.189-201ENST00000363959 112 ntBASIC-0.42□□□□□ -2.48
LIMCH1Q9UPQ0 RNU6-669P-201ENST00000365575 107 ntBASIC-0.42□□□□□ -2.48
LIMCH1Q9UPQ0 RNU6-696P-201ENST00000390834 107 ntBASIC-0.42□□□□□ -2.48
LIMCH1Q9UPQ0 RNU6-284P-201ENST00000411105 106 ntBASIC-0.42□□□□□ -2.48
LIMCH1Q9UPQ0 RNU7-88P-201ENST00000458752 63 ntBASIC-0.42□□□□□ -2.48
LIMCH1Q9UPQ0 MIR466-201ENST00000580653 84 ntBASIC-0.42□□□□□ -2.48
LIMCH1Q9UPQ0 MIR4436A-201ENST00000585278 85 ntBASIC-0.42□□□□□ -2.48
LIMCH1Q9UPQ0 RNU6-598P-201ENST00000364017 105 ntBASIC-0.43□□□□□ -2.48
LIMCH1Q9UPQ0 Y_RNA.583-201ENST00000391033 113 ntBASIC-0.43□□□□□ -2.48
LIMCH1Q9UPQ0 AP000533.3-201ENST00000447704 118 ntBASIC-0.43□□□□□ -2.48
LIMCH1Q9UPQ0 RNU6-1262P-201ENST00000516217 96 ntBASIC-0.43□□□□□ -2.48
LIMCH1Q9UPQ0 RNU6-1174P-201ENST00000517278 101 ntBASIC-0.43□□□□□ -2.48
LIMCH1Q9UPQ0 RNU6-788P-201ENST00000390967 104 ntBASIC-0.44□□□□□ -2.48
LIMCH1Q9UPQ0 RNU6-721P-201ENST00000410155 105 ntBASIC-0.44□□□□□ -2.48
LIMCH1Q9UPQ0 AC020913.3-201ENST00000594678 125 ntTSL 3 BASIC-0.44□□□□□ -2.48
LIMCH1Q9UPQ0 MIR601-201ENST00000385256 79 ntBASIC-0.45□□□□□ -2.48
LIMCH1Q9UPQ0 RNU6-1233P-201ENST00000362922 102 ntBASIC-0.46□□□□□ -2.48
LIMCH1Q9UPQ0 RNU6-1238P-201ENST00000517215 102 ntBASIC-0.46□□□□□ -2.48
LIMCH1Q9UPQ0 MIR3938-201ENST00000582157 103 ntBASIC-0.46□□□□□ -2.48
LIMCH1Q9UPQ0 SNORD114-14-201ENST00000362723 75 ntBASIC-0.47□□□□□ -2.48
LIMCH1Q9UPQ0 RNU6-732P-201ENST00000516033 103 ntBASIC-0.47□□□□□ -2.48
LIMCH1Q9UPQ0 SNORD1B-201ENST00000363091 84 ntBASIC-0.48□□□□□ -2.49
LIMCH1Q9UPQ0 SNORD115-33-201ENST00000363723 82 ntBASIC-0.48□□□□□ -2.49
LIMCH1Q9UPQ0 SNORD63.1-201ENST00000516178 80 ntBASIC-0.48□□□□□ -2.49
LIMCH1Q9UPQ0 SCARNA17-201ENST00000516183 144 ntBASIC-0.48□□□□□ -2.49
LIMCH1Q9UPQ0 Y_RNA.484-201ENST00000384389 103 ntBASIC-0.49□□□□□ -2.49
LIMCH1Q9UPQ0 SNORA26.4-201ENST00000391188 123 ntBASIC-0.49□□□□□ -2.49
LIMCH1Q9UPQ0 SNORA3B-201ENST00000391305 131 ntBASIC-0.49□□□□□ -2.49
LIMCH1Q9UPQ0 SNORD114-17-201ENST00000364699 75 ntBASIC-0.5□□□□□ -2.49
LIMCH1Q9UPQ0 Y_RNA.468-201ENST00000384298 102 ntBASIC-0.5□□□□□ -2.49
LIMCH1Q9UPQ0 MIR548AA1-201ENST00000384971 97 ntBASIC-0.5□□□□□ -2.49
LIMCH1Q9UPQ0 MIR198-201ENST00000637333 62 ntBASIC-0.5□□□□□ -2.49
LIMCH1Q9UPQ0 MIR587-201ENST00000384845 96 ntBASIC-0.51□□□□□ -2.49
LIMCH1Q9UPQ0 RNU6-231P-201ENST00000517122 103 ntBASIC-0.51□□□□□ -2.49
LIMCH1Q9UPQ0 MIR7110-201ENST00000612638 86 ntBASIC-0.51□□□□□ -2.49
LIMCH1Q9UPQ0 U2.18-201ENST00000622185 84 ntBASIC-0.51□□□□□ -2.49
LIMCH1Q9UPQ0 RNU6-172P-201ENST00000411000 93 ntBASIC-0.52□□□□□ -2.49
LIMCH1Q9UPQ0 RNU7-119P-201ENST00000459279 63 ntBASIC-0.52□□□□□ -2.49
LIMCH1Q9UPQ0 SPRY4-IT1_2.1-201ENST00000612613 121 ntBASIC-0.52□□□□□ -2.49
LIMCH1Q9UPQ0 SNORD19-201ENST00000391191 68 ntBASIC-0.53□□□□□ -2.49
LIMCH1Q9UPQ0 RNU6-520P-201ENST00000384717 104 ntBASIC-0.54□□□□□ -2.5
LIMCH1Q9UPQ0 MIR4320-201ENST00000636981 65 ntBASIC-0.54□□□□□ -2.5
LIMCH1Q9UPQ0 MIR196A1-201ENST00000388006 70 ntBASIC-0.55□□□□□ -2.5
LIMCH1Q9UPQ0 AL353691.2-201ENST00000443795 59 ntBASIC-0.55□□□□□ -2.5
Retrieved 100 of 98,524 protein–RNA pairs in 27.5 ms