Protein–RNA interactions for Protein: Q9NUL7

DDX28, Probable ATP-dependent RNA helicase DDX28, humanhuman

Known RBP Predictions only

Length 540 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX28Q9NUL7 RNU6-34P-201ENST00000364874 107 ntBASIC-1.5□□□□□ -2.65
DDX28Q9NUL7 RNU6-129P-201ENST00000391022 107 ntBASIC-1.5□□□□□ -2.65
DDX28Q9NUL7 Y_RNA.611-201ENST00000410682 108 ntBASIC-1.5□□□□□ -2.65
DDX28Q9NUL7 AC018880.2-201ENST00000414265 201 ntBASIC-1.5□□□□□ -2.65
DDX28Q9NUL7 AL606753.1-201ENST00000427435 87 ntBASIC-1.5□□□□□ -2.65
DDX28Q9NUL7 MIR1246-201ENST00000636535 73 ntBASIC-1.5□□□□□ -2.65
DDX28Q9NUL7 MIR630-201ENST00000384957 97 ntBASIC-1.51□□□□□ -2.65
DDX28Q9NUL7 RNY4P27-201ENST00000363341 96 ntBASIC-1.52□□□□□ -2.65
DDX28Q9NUL7 RNU6-226P-201ENST00000363778 107 ntBASIC-1.52□□□□□ -2.65
DDX28Q9NUL7 MIR488-201ENST00000365739 83 ntBASIC-1.53□□□□□ -2.65
DDX28Q9NUL7 RNU6-675P-201ENST00000384236 104 ntBASIC-1.53□□□□□ -2.65
DDX28Q9NUL7 RNU6-1081P-201ENST00000384537 107 ntBASIC-1.53□□□□□ -2.65
DDX28Q9NUL7 RNU6-380P-201ENST00000410207 107 ntBASIC-1.53□□□□□ -2.65
DDX28Q9NUL7 MIR4770-201ENST00000579149 58 ntBASIC-1.53□□□□□ -2.65
DDX28Q9NUL7 MIR1297-201ENST00000637311 77 ntBASIC-1.53□□□□□ -2.65
DDX28Q9NUL7 RNU6-79P-201ENST00000362511 107 ntBASIC-1.54□□□□□ -2.66
DDX28Q9NUL7 RNU6-640P-201ENST00000363693 105 ntBASIC-1.54□□□□□ -2.66
DDX28Q9NUL7 RNU6-147P-201ENST00000383983 107 ntBASIC-1.55□□□□□ -2.66
DDX28Q9NUL7 SNORD113-2-201ENST00000391082 72 ntBASIC-1.55□□□□□ -2.66
DDX28Q9NUL7 Y_RNA.616-201ENST00000410835 95 ntBASIC-1.55□□□□□ -2.66
DDX28Q9NUL7 MIR664A-201ENST00000626086 82 ntBASIC-1.55□□□□□ -2.66
DDX28Q9NUL7 AC006160.2-201ENST00000637708 154 ntBASIC-1.55□□□□□ -2.66
DDX28Q9NUL7 RNA5SP86-201ENST00000390869 98 ntBASIC-1.56□□□□□ -2.66
DDX28Q9NUL7 RNU6-1267P-201ENST00000410747 107 ntBASIC-1.56□□□□□ -2.66
DDX28Q9NUL7 MTND4LP1-201ENST00000446263 157 ntBASIC-1.56□□□□□ -2.66
DDX28Q9NUL7 RNU6-919P-201ENST00000516731 104 ntBASIC-1.56□□□□□ -2.66
DDX28Q9NUL7 RNU6-844P-201ENST00000517175 102 ntBASIC-1.56□□□□□ -2.66
DDX28Q9NUL7 SNORA63.4-201ENST00000362763 126 ntBASIC-1.57□□□□□ -2.66
DDX28Q9NUL7 RNU6-563P-201ENST00000364872 108 ntBASIC-1.57□□□□□ -2.66
DDX28Q9NUL7 RNU6-215P-201ENST00000365169 102 ntBASIC-1.57□□□□□ -2.66
DDX28Q9NUL7 RNU6-400P-201ENST00000391173 106 ntBASIC-1.57□□□□□ -2.66
DDX28Q9NUL7 MIR3170-201ENST00000582699 77 ntBASIC-1.57□□□□□ -2.66
DDX28Q9NUL7 Y_RNA.340-201ENST00000365330 92 ntBASIC-1.58□□□□□ -2.66
DDX28Q9NUL7 SNORD45A-201ENST00000384512 84 ntBASIC-1.58□□□□□ -2.66
DDX28Q9NUL7 RNU6-1152P-201ENST00000384576 107 ntBASIC-1.58□□□□□ -2.66
DDX28Q9NUL7 SNORA41B-201ENST00000384785 128 ntBASIC-1.58□□□□□ -2.66
DDX28Q9NUL7 TRAJ53-201ENST00000390485 66 ntAPPRIS P1 BASIC-1.58□□□□□ -2.66
DDX28Q9NUL7 RNU6-258P-201ENST00000390884 101 ntBASIC-1.58□□□□□ -2.66
DDX28Q9NUL7 AL603908.1-201ENST00000406098 201 ntBASIC-1.58□□□□□ -2.66
DDX28Q9NUL7 SNORD113.1-201ENST00000363280 73 ntBASIC-1.59□□□□□ -2.66
DDX28Q9NUL7 RNA5SP215-201ENST00000363440 122 ntBASIC-1.59□□□□□ -2.66
DDX28Q9NUL7 SNORD116-16-201ENST00000384533 92 ntBASIC-1.59□□□□□ -2.66
DDX28Q9NUL7 SNORD20-201ENST00000384550 80 ntBASIC-1.59□□□□□ -2.66
DDX28Q9NUL7 MIR487B-201ENST00000385021 84 ntBASIC-1.59□□□□□ -2.66
DDX28Q9NUL7 MIR8053-201ENST00000613344 75 ntBASIC-1.59□□□□□ -2.66
DDX28Q9NUL7 SNORD1B-201ENST00000363091 84 ntBASIC-1.6□□□□□ -2.67
DDX28Q9NUL7 RNU6-668P-201ENST00000364180 107 ntBASIC-1.6□□□□□ -2.67
DDX28Q9NUL7 Y_RNA.442-201ENST00000384131 102 ntBASIC-1.6□□□□□ -2.67
DDX28Q9NUL7 Y_RNA.678-201ENST00000516408 96 ntBASIC-1.6□□□□□ -2.67
DDX28Q9NUL7 RNU6-789P-201ENST00000517105 102 ntBASIC-1.6□□□□□ -2.67
DDX28Q9NUL7 RNU6-1111P-201ENST00000391118 107 ntBASIC-1.61□□□□□ -2.67
DDX28Q9NUL7 MIR548H1-201ENST00000408610 102 ntBASIC-1.61□□□□□ -2.67
DDX28Q9NUL7 Y_RNA.684-201ENST00000516510 99 ntBASIC-1.62□□□□□ -2.67
DDX28Q9NUL7 AC120024.2-201ENST00000576526 175 ntBASIC-1.62□□□□□ -2.67
DDX28Q9NUL7 MIR23C-201ENST00000579846 100 ntBASIC-1.62□□□□□ -2.67
DDX28Q9NUL7 Y_RNA.17-201ENST00000362433 111 ntBASIC-1.63□□□□□ -2.67
DDX28Q9NUL7 Y_RNA.73-201ENST00000362910 113 ntBASIC-1.63□□□□□ -2.67
DDX28Q9NUL7 Y_RNA.607-201ENST00000410597 98 ntBASIC-1.63□□□□□ -2.67
DDX28Q9NUL7 RNU6-1134P-201ENST00000365156 101 ntBASIC-1.64□□□□□ -2.67
DDX28Q9NUL7 Y_RNA.375-201ENST00000365625 101 ntBASIC-1.64□□□□□ -2.67
DDX28Q9NUL7 MIR548AA1-201ENST00000384971 97 ntBASIC-1.64□□□□□ -2.67
DDX28Q9NUL7 snoMBII-202.2-201ENST00000517263 86 ntBASIC-1.65□□□□□ -2.67
DDX28Q9NUL7 IGLL4P-201ENST00000614590 133 ntBASIC-1.65□□□□□ -2.67
DDX28Q9NUL7 RNU6-247P-201ENST00000362636 107 ntBASIC-1.66□□□□□ -2.68
DDX28Q9NUL7 RNU6-315P-201ENST00000362666 107 ntBASIC-1.66□□□□□ -2.68
DDX28Q9NUL7 Y_RNA.103-201ENST00000363171 102 ntBASIC-1.66□□□□□ -2.68
DDX28Q9NUL7 Y_RNA.232-201ENST00000364369 96 ntBASIC-1.66□□□□□ -2.68
DDX28Q9NUL7 RNA5SP173-201ENST00000364857 136 ntBASIC-1.66□□□□□ -2.68
DDX28Q9NUL7 Y_RNA.426-201ENST00000384068 113 ntBASIC-1.66□□□□□ -2.68
DDX28Q9NUL7 MIR579-201ENST00000385221 98 ntBASIC-1.66□□□□□ -2.68
DDX28Q9NUL7 MTRNR2L9-201ENST00000622562 75 ntBASIC-1.66□□□□□ -2.68
DDX28Q9NUL7 Y_RNA.175-201ENST00000363794 111 ntBASIC-1.67□□□□□ -2.68
DDX28Q9NUL7 RNU6-695P-201ENST00000391157 104 ntBASIC-1.67□□□□□ -2.68
DDX28Q9NUL7 Y_RNA.593-201ENST00000410292 98 ntBASIC-1.67□□□□□ -2.68
DDX28Q9NUL7 RNU7-151P-201ENST00000516930 53 ntBASIC-1.67□□□□□ -2.68
DDX28Q9NUL7 SPRY4-IT1_2.1-201ENST00000612613 121 ntBASIC-1.67□□□□□ -2.68
DDX28Q9NUL7 RNU6-1094P-201ENST00000362416 104 ntBASIC-1.69□□□□□ -2.68
DDX28Q9NUL7 RNY1P1-201ENST00000364372 112 ntBASIC-1.69□□□□□ -2.68
DDX28Q9NUL7 Y_RNA.543-201ENST00000384649 107 ntBASIC-1.7□□□□□ -2.68
DDX28Q9NUL7 SNORD63.2-201ENST00000516303 64 ntBASIC-1.7□□□□□ -2.68
DDX28Q9NUL7 Y_RNA.699-201ENST00000516803 93 ntBASIC-1.7□□□□□ -2.68
DDX28Q9NUL7 ST7-OT3_1.1-201ENST00000619607 74 ntBASIC-1.7□□□□□ -2.68
DDX28Q9NUL7 Y_RNA.316-201ENST00000365118 111 ntBASIC-1.71□□□□□ -2.68
DDX28Q9NUL7 RNU6-1241P-201ENST00000384536 107 ntBASIC-1.71□□□□□ -2.68
DDX28Q9NUL7 SNORD116-24-201ENST00000384549 92 ntBASIC-1.71□□□□□ -2.68
DDX28Q9NUL7 RNU6-540P-201ENST00000384622 101 ntBASIC-1.71□□□□□ -2.68
DDX28Q9NUL7 RNU6-172P-201ENST00000411000 93 ntBASIC-1.71□□□□□ -2.68
DDX28Q9NUL7 MIR548AI-201ENST00000579940 88 ntBASIC-1.71□□□□□ -2.68
DDX28Q9NUL7 AC013734.1-201ENST00000619329 111 ntBASIC-1.71□□□□□ -2.68
DDX28Q9NUL7 MIR7978-201ENST00000636158 59 ntBASIC-1.71□□□□□ -2.68
DDX28Q9NUL7 RNU6-669P-201ENST00000365575 107 ntBASIC-1.72□□□□□ -2.68
DDX28Q9NUL7 RNU6-406P-201ENST00000516470 107 ntBASIC-1.72□□□□□ -2.68
DDX28Q9NUL7 MIR5588-201ENST00000581890 63 ntBASIC-1.72□□□□□ -2.68
DDX28Q9NUL7 MIR3123-201ENST00000583417 75 ntBASIC-1.72□□□□□ -2.68
DDX28Q9NUL7 AC005520.4-201ENST00000604337 90 ntBASIC-1.72□□□□□ -2.68
DDX28Q9NUL7 RNU6-1131P-201ENST00000364955 107 ntBASIC-1.73□□□□□ -2.69
DDX28Q9NUL7 RNU6-44P-201ENST00000384045 107 ntBASIC-1.73□□□□□ -2.69
DDX28Q9NUL7 RNU6-49P-201ENST00000384256 107 ntBASIC-1.73□□□□□ -2.69
DDX28Q9NUL7 RNU6-995P-201ENST00000391244 107 ntBASIC-1.73□□□□□ -2.69
DDX28Q9NUL7 Y_RNA.788-201ENST00000622394 112 ntBASIC-1.73□□□□□ -2.69
Retrieved 100 of 98,524 protein–RNA pairs in 10.5 ms