Protein–RNA interactions for Protein: Q9H0E7

USP44, Ubiquitin carboxyl-terminal hydrolase 44, humanhuman

Predictions only

Length 712 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP44Q9H0E7 MIR154-201ENST00000385243 84 ntBASIC-0.96□□□□□ -2.56
USP44Q9H0E7 RNU6-587P-201ENST00000391282 106 ntBASIC-0.96□□□□□ -2.56
USP44Q9H0E7 U4.4-201ENST00000620626 117 ntBASIC-0.96□□□□□ -2.56
USP44Q9H0E7 Y_RNA.74-201ENST00000362911 99 ntBASIC-0.97□□□□□ -2.56
USP44Q9H0E7 RNA5SP215-201ENST00000363440 122 ntBASIC-0.97□□□□□ -2.56
USP44Q9H0E7 RNA5SP173-201ENST00000364857 136 ntBASIC-0.97□□□□□ -2.56
USP44Q9H0E7 Y_RNA.325-201ENST00000365171 122 ntBASIC-0.97□□□□□ -2.56
USP44Q9H0E7 MIR548V-201ENST00000584165 80 ntBASIC-0.98□□□□□ -2.57
USP44Q9H0E7 MIR3202-2-201ENST00000635980 79 ntBASIC-0.98□□□□□ -2.57
USP44Q9H0E7 RNU6-687P-201ENST00000516443 89 ntBASIC-0.99□□□□□ -2.57
USP44Q9H0E7 RNU6-1216P-201ENST00000362590 107 ntBASIC-1□□□□□ -2.57
USP44Q9H0E7 SNORD115-31-201ENST00000365318 82 ntBASIC-1□□□□□ -2.57
USP44Q9H0E7 SNX3P1X-201ENST00000414887 175 ntBASIC-1□□□□□ -2.57
USP44Q9H0E7 U7.5-201ENST00000517224 61 ntBASIC-1□□□□□ -2.57
USP44Q9H0E7 RNU6-1233P-201ENST00000362922 102 ntBASIC-1.01□□□□□ -2.57
USP44Q9H0E7 Y_RNA.282-201ENST00000364793 102 ntBASIC-1.01□□□□□ -2.57
USP44Q9H0E7 SNORD116-24-201ENST00000384549 92 ntBASIC-1.01□□□□□ -2.57
USP44Q9H0E7 MIR630-201ENST00000384957 97 ntBASIC-1.01□□□□□ -2.57
USP44Q9H0E7 SNORA26.4-201ENST00000391188 123 ntBASIC-1.01□□□□□ -2.57
USP44Q9H0E7 RNU7-88P-201ENST00000458752 63 ntBASIC-1.01□□□□□ -2.57
USP44Q9H0E7 U7.4-201ENST00000614961 63 ntBASIC-1.01□□□□□ -2.57
USP44Q9H0E7 RNU6-895P-201ENST00000384125 103 ntBASIC-1.02□□□□□ -2.57
USP44Q9H0E7 RNU6-1124P-201ENST00000384169 107 ntBASIC-1.02□□□□□ -2.57
USP44Q9H0E7 MIR3115-201ENST00000577915 68 ntBASIC-1.02□□□□□ -2.57
USP44Q9H0E7 MIR4320-201ENST00000636981 65 ntBASIC-1.02□□□□□ -2.57
USP44Q9H0E7 RNU6-228P-201ENST00000362700 106 ntBASIC-1.03□□□□□ -2.57
USP44Q9H0E7 SNORD115-33-201ENST00000363723 82 ntBASIC-1.03□□□□□ -2.57
USP44Q9H0E7 Y_RNA.236-201ENST00000364427 111 ntBASIC-1.03□□□□□ -2.57
USP44Q9H0E7 RNU6-458P-201ENST00000384179 107 ntBASIC-1.03□□□□□ -2.57
USP44Q9H0E7 RNU6-411P-201ENST00000384451 107 ntBASIC-1.03□□□□□ -2.57
USP44Q9H0E7 MIR527-201ENST00000385244 85 ntBASIC-1.03□□□□□ -2.57
USP44Q9H0E7 SNORD63.1-201ENST00000516178 80 ntBASIC-1.03□□□□□ -2.57
USP44Q9H0E7 RNU6-1238P-201ENST00000517215 102 ntBASIC-1.03□□□□□ -2.57
USP44Q9H0E7 U6.58-201ENST00000613107 107 ntBASIC-1.03□□□□□ -2.57
USP44Q9H0E7 Y_RNA.468-201ENST00000384298 102 ntBASIC-1.04□□□□□ -2.58
USP44Q9H0E7 RNU6-24P-201ENST00000384440 107 ntBASIC-1.04□□□□□ -2.58
USP44Q9H0E7 RNU6-732P-201ENST00000516033 103 ntBASIC-1.04□□□□□ -2.58
USP44Q9H0E7 MIR1255A-201ENST00000408338 113 ntBASIC-1.05□□□□□ -2.58
USP44Q9H0E7 RNU7-134P-201ENST00000458997 64 ntBASIC-1.05□□□□□ -2.58
USP44Q9H0E7 snoU83B.1-201ENST00000517136 88 ntBASIC-1.05□□□□□ -2.58
USP44Q9H0E7 RNU6-1015P-201ENST00000517121 99 ntBASIC-1.06□□□□□ -2.58
USP44Q9H0E7 Y_RNA.109-201ENST00000363215 102 ntBASIC-1.07□□□□□ -2.58
USP44Q9H0E7 SNORD113-2-201ENST00000391082 72 ntBASIC-1.07□□□□□ -2.58
USP44Q9H0E7 MIR8485-201ENST00000401372 91 ntBASIC-1.07□□□□□ -2.58
USP44Q9H0E7 RNU6-1174P-201ENST00000517278 101 ntBASIC-1.07□□□□□ -2.58
USP44Q9H0E7 MIR4306-201ENST00000583390 91 ntBASIC-1.07□□□□□ -2.58
USP44Q9H0E7 Y_RNA.375-201ENST00000365625 101 ntBASIC-1.08□□□□□ -2.58
USP44Q9H0E7 MIR1302-4-201ENST00000408701 150 ntBASIC-1.08□□□□□ -2.58
USP44Q9H0E7 MIR4679-1-201ENST00000637619 75 ntBASIC-1.08□□□□□ -2.58
USP44Q9H0E7 Y_RNA.365-201ENST00000365537 102 ntBASIC-1.09□□□□□ -2.58
USP44Q9H0E7 RNU6-279P-201ENST00000391297 101 ntBASIC-1.09□□□□□ -2.58
USP44Q9H0E7 RNU6-857P-201ENST00000515893 110 ntBASIC-1.09□□□□□ -2.58
USP44Q9H0E7 MIR429-201ENST00000362106 83 ntBASIC-1.1□□□□□ -2.59
USP44Q9H0E7 MIR1468-201ENST00000410600 86 ntBASIC-1.1□□□□□ -2.59
USP44Q9H0E7 RNA5SP192-201ENST00000364404 120 ntBASIC-1.11□□□□□ -2.59
USP44Q9H0E7 SNORD78.1-201ENST00000390866 65 ntBASIC-1.11□□□□□ -2.59
USP44Q9H0E7 SNORD19-201ENST00000391191 68 ntBASIC-1.11□□□□□ -2.59
USP44Q9H0E7 AL353691.2-201ENST00000443795 59 ntBASIC-1.11□□□□□ -2.59
USP44Q9H0E7 RNU6-696P-201ENST00000390834 107 ntBASIC-1.13□□□□□ -2.59
USP44Q9H0E7 RNU6-634P-201ENST00000459134 106 ntBASIC-1.13□□□□□ -2.59
USP44Q9H0E7 SNORA41B-201ENST00000384785 128 ntBASIC-1.14□□□□□ -2.59
USP44Q9H0E7 MIR601-201ENST00000385256 79 ntBASIC-1.14□□□□□ -2.59
USP44Q9H0E7 RNU6-1262P-201ENST00000516217 96 ntBASIC-1.14□□□□□ -2.59
USP44Q9H0E7 RNU6-523P-201ENST00000516304 54 ntBASIC-1.14□□□□□ -2.59
USP44Q9H0E7 RNA5SP461-201ENST00000516451 104 ntBASIC-1.14□□□□□ -2.59
USP44Q9H0E7 AP002795.1-201ENST00000534879 84 ntBASIC-1.14□□□□□ -2.59
USP44Q9H0E7 RNU6-598P-201ENST00000364017 105 ntBASIC-1.15□□□□□ -2.59
USP44Q9H0E7 SNORD116-16-201ENST00000384533 92 ntBASIC-1.15□□□□□ -2.59
USP44Q9H0E7 RNU6-540P-201ENST00000384622 101 ntBASIC-1.15□□□□□ -2.59
USP44Q9H0E7 RNU6-226P-201ENST00000363778 107 ntBASIC-1.17□□□□□ -2.6
USP44Q9H0E7 RNA5SP225-201ENST00000410874 135 ntBASIC-1.17□□□□□ -2.6
USP44Q9H0E7 RNU6-542P-201ENST00000516405 103 ntBASIC-1.17□□□□□ -2.6
USP44Q9H0E7 MIR3165-201ENST00000579874 75 ntBASIC-1.17□□□□□ -2.6
USP44Q9H0E7 Y_RNA.545-201ENST00000384652 105 ntBASIC-1.18□□□□□ -2.6
USP44Q9H0E7 MIR6818-201ENST00000621576 65 ntBASIC-1.18□□□□□ -2.6
USP44Q9H0E7 MIR5683-201ENST00000636514 76 ntBASIC-1.18□□□□□ -2.6
USP44Q9H0E7 MIR198-201ENST00000637333 62 ntBASIC-1.18□□□□□ -2.6
USP44Q9H0E7 RNA5SP26-201ENST00000362406 119 ntBASIC-1.2□□□□□ -2.6
USP44Q9H0E7 RNU6-663P-201ENST00000391105 106 ntBASIC-1.2□□□□□ -2.6
USP44Q9H0E7 MIR889-201ENST00000401280 79 ntBASIC-1.2□□□□□ -2.6
USP44Q9H0E7 MIR548Q-201ENST00000408404 100 ntBASIC-1.2□□□□□ -2.6
USP44Q9H0E7 RNU6-706P-201ENST00000517229 104 ntBASIC-1.2□□□□□ -2.6
USP44Q9H0E7 U2.18-201ENST00000622185 84 ntBASIC-1.21□□□□□ -2.6
USP44Q9H0E7 ULK3-223ENST00000631115 126 ntTSL 5 BASIC-1.21□□□□□ -2.6
USP44Q9H0E7 Y_RNA.443-201ENST00000384135 111 ntBASIC-1.22□□□□□ -2.6
USP44Q9H0E7 MIR29B1-201ENST00000385015 81 ntBASIC-1.22□□□□□ -2.6
USP44Q9H0E7 MIR507-201ENST00000385234 94 ntBASIC-1.22□□□□□ -2.6
USP44Q9H0E7 MIR4723-201ENST00000585070 81 ntBASIC-1.22□□□□□ -2.6
USP44Q9H0E7 MIR4490-201ENST00000582647 84 ntBASIC-1.23□□□□□ -2.61
USP44Q9H0E7 TRAJ9-201ENST00000390528 61 ntAPPRIS P1 BASIC-1.24□□□□□ -2.61
USP44Q9H0E7 SNORD1B-201ENST00000363091 84 ntBASIC-1.25□□□□□ -2.61
USP44Q9H0E7 RNU6-630P-201ENST00000391258 106 ntBASIC-1.25□□□□□ -2.61
USP44Q9H0E7 HLA-S-202ENST00000425174 53 ntBASIC-1.25□□□□□ -2.61
USP44Q9H0E7 RNU6-92P-201ENST00000605893 104 ntBASIC-1.25□□□□□ -2.61
USP44Q9H0E7 RNU6-576P-201ENST00000390854 102 ntBASIC-1.26□□□□□ -2.61
USP44Q9H0E7 RNU6-871P-201ENST00000516122 100 ntBASIC-1.26□□□□□ -2.61
USP44Q9H0E7 MIR5591-201ENST00000578248 65 ntBASIC-1.26□□□□□ -2.61
USP44Q9H0E7 U4.2-201ENST00000618561 85 ntBASIC-1.26□□□□□ -2.61
USP44Q9H0E7 SNORD30.1-201ENST00000391309 70 ntBASIC-1.27□□□□□ -2.61
USP44Q9H0E7 AC091912.2-201ENST00000624798 167 ntBASIC-1.28□□□□□ -2.61
Retrieved 100 of 98,524 protein–RNA pairs in 13.3 ms