Protein–RNA interactions for Protein: Q8IWP9

CCDC28A, Coiled-coil domain-containing protein 28A, humanhuman

Predictions only

Length 274 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28AQ8IWP9 RNA5SP25-201ENST00000410815 110 ntBASIC-1□□□□□ -2.57
CCDC28AQ8IWP9 RNU6-1238P-201ENST00000517215 102 ntBASIC-1□□□□□ -2.57
CCDC28AQ8IWP9 SNORD115-33-201ENST00000363723 82 ntBASIC-1.01□□□□□ -2.57
CCDC28AQ8IWP9 RNU6-663P-201ENST00000391105 106 ntBASIC-1.01□□□□□ -2.57
CCDC28AQ8IWP9 RNU7-88P-201ENST00000458752 63 ntBASIC-1.01□□□□□ -2.57
CCDC28AQ8IWP9 RNU6-732P-201ENST00000516033 103 ntBASIC-1.01□□□□□ -2.57
CCDC28AQ8IWP9 SNORA72.7-201ENST00000516349 94 ntBASIC-1.01□□□□□ -2.57
CCDC28AQ8IWP9 RNU6-542P-201ENST00000516405 103 ntBASIC-1.01□□□□□ -2.57
CCDC28AQ8IWP9 RNU6-540P-201ENST00000384622 101 ntBASIC-1.02□□□□□ -2.57
CCDC28AQ8IWP9 MIR3681-201ENST00000580089 72 ntBASIC-1.02□□□□□ -2.57
CCDC28AQ8IWP9 RNU6-523P-201ENST00000516304 54 ntBASIC-1.03□□□□□ -2.57
CCDC28AQ8IWP9 Y_RNA.109-201ENST00000363215 102 ntBASIC-1.04□□□□□ -2.58
CCDC28AQ8IWP9 MIR147A-201ENST00000385079 72 ntBASIC-1.04□□□□□ -2.58
CCDC28AQ8IWP9 MIR889-201ENST00000401280 79 ntBASIC-1.04□□□□□ -2.58
CCDC28AQ8IWP9 MIR4662A-201ENST00000637499 67 ntBASIC-1.04□□□□□ -2.58
CCDC28AQ8IWP9 Y_RNA.443-201ENST00000384135 111 ntBASIC-1.05□□□□□ -2.58
CCDC28AQ8IWP9 RNU6-1174P-201ENST00000517278 101 ntBASIC-1.05□□□□□ -2.58
CCDC28AQ8IWP9 SNORD116-16-201ENST00000384533 92 ntBASIC-1.06□□□□□ -2.58
CCDC28AQ8IWP9 RNU6-696P-201ENST00000390834 107 ntBASIC-1.06□□□□□ -2.58
CCDC28AQ8IWP9 Y_RNA.610-201ENST00000410681 103 ntBASIC-1.06□□□□□ -2.58
CCDC28AQ8IWP9 SNORD30.1-201ENST00000391309 70 ntBASIC-1.07□□□□□ -2.58
CCDC28AQ8IWP9 AL353691.2-201ENST00000443795 59 ntBASIC-1.07□□□□□ -2.58
CCDC28AQ8IWP9 SCARNA20.2-201ENST00000516052 116 ntBASIC-1.07□□□□□ -2.58
CCDC28AQ8IWP9 SNORD114-25-201ENST00000363742 72 ntBASIC-1.08□□□□□ -2.58
CCDC28AQ8IWP9 TRAJ57-201ENST00000390482 63 ntAPPRIS P1 BASIC-1.08□□□□□ -2.58
CCDC28AQ8IWP9 RNU6-630P-201ENST00000391258 106 ntBASIC-1.08□□□□□ -2.58
CCDC28AQ8IWP9 SNORD63.1-201ENST00000516178 80 ntBASIC-1.08□□□□□ -2.58
CCDC28AQ8IWP9 SNORD114-15-201ENST00000364687 72 ntBASIC-1.09□□□□□ -2.58
CCDC28AQ8IWP9 RNU6-431P-201ENST00000383874 107 ntBASIC-1.09□□□□□ -2.58
CCDC28AQ8IWP9 MIR196A1-201ENST00000388006 70 ntBASIC-1.09□□□□□ -2.58
CCDC28AQ8IWP9 MIR6086-201ENST00000638065 55 ntBASIC-1.09□□□□□ -2.58
CCDC28AQ8IWP9 RNU6-776P-201ENST00000364403 104 ntBASIC-1.1□□□□□ -2.59
CCDC28AQ8IWP9 RNU6-1022P-201ENST00000365049 104 ntBASIC-1.1□□□□□ -2.59
CCDC28AQ8IWP9 SNORD64-201ENST00000386683 67 ntBASIC-1.1□□□□□ -2.59
CCDC28AQ8IWP9 SCARNA21.1-201ENST00000515996 128 ntBASIC-1.1□□□□□ -2.59
CCDC28AQ8IWP9 SNORA25.4-201ENST00000363666 124 ntBASIC-1.11□□□□□ -2.59
CCDC28AQ8IWP9 RNU6-649P-201ENST00000384463 107 ntBASIC-1.12□□□□□ -2.59
CCDC28AQ8IWP9 SNORA41B-201ENST00000384785 128 ntBASIC-1.12□□□□□ -2.59
CCDC28AQ8IWP9 RNU6-1275P-201ENST00000391087 107 ntBASIC-1.12□□□□□ -2.59
CCDC28AQ8IWP9 RNU6-1262P-201ENST00000516217 96 ntBASIC-1.13□□□□□ -2.59
CCDC28AQ8IWP9 RNU6-92P-201ENST00000605893 104 ntBASIC-1.13□□□□□ -2.59
CCDC28AQ8IWP9 RNU6-598P-201ENST00000364017 105 ntBASIC-1.14□□□□□ -2.59
CCDC28AQ8IWP9 Y_RNA.565-201ENST00000384719 101 ntBASIC-1.14□□□□□ -2.59
CCDC28AQ8IWP9 RNU6-539P-201ENST00000516665 103 ntBASIC-1.14□□□□□ -2.59
CCDC28AQ8IWP9 RNU6-1236P-201ENST00000517080 99 ntBASIC-1.14□□□□□ -2.59
CCDC28AQ8IWP9 TRAJ9-201ENST00000390528 61 ntAPPRIS P1 BASIC-1.16□□□□□ -2.6
CCDC28AQ8IWP9 SNORD19-201ENST00000391191 68 ntBASIC-1.16□□□□□ -2.6
CCDC28AQ8IWP9 SNORD57-201ENST00000448188 72 ntBASIC-1.16□□□□□ -2.6
CCDC28AQ8IWP9 snoU13.19-201ENST00000459148 104 ntBASIC-1.16□□□□□ -2.6
CCDC28AQ8IWP9 snoU83B.1-201ENST00000517136 88 ntBASIC-1.16□□□□□ -2.6
CCDC28AQ8IWP9 MIR548AX-201ENST00000580117 73 ntBASIC-1.16□□□□□ -2.6
CCDC28AQ8IWP9 SNORD83B-201ENST00000386745 93 ntBASIC-1.17□□□□□ -2.6
CCDC28AQ8IWP9 MIR548Q-201ENST00000408404 100 ntBASIC-1.17□□□□□ -2.6
CCDC28AQ8IWP9 U6.111-201ENST00000636093 83 ntBASIC-1.17□□□□□ -2.6
CCDC28AQ8IWP9 MIR5683-201ENST00000636514 76 ntBASIC-1.17□□□□□ -2.6
CCDC28AQ8IWP9 MIR382-201ENST00000637119 76 ntBASIC-1.17□□□□□ -2.6
CCDC28AQ8IWP9 RNU6-30P-201ENST00000384561 107 ntBASIC-1.18□□□□□ -2.6
CCDC28AQ8IWP9 MIR4490-201ENST00000582647 84 ntBASIC-1.18□□□□□ -2.6
CCDC28AQ8IWP9 AC020913.3-201ENST00000594678 125 ntTSL 3 BASIC-1.19□□□□□ -2.6
CCDC28AQ8IWP9 AC005520.4-201ENST00000604337 90 ntBASIC-1.2□□□□□ -2.6
CCDC28AQ8IWP9 U2.18-201ENST00000622185 84 ntBASIC-1.2□□□□□ -2.6
CCDC28AQ8IWP9 SNORD1B-201ENST00000363091 84 ntBASIC-1.21□□□□□ -2.6
CCDC28AQ8IWP9 AL500527.2-201ENST00000454105 95 ntBASIC-1.21□□□□□ -2.6
CCDC28AQ8IWP9 SCARNA17-201ENST00000516183 144 ntBASIC-1.21□□□□□ -2.6
CCDC28AQ8IWP9 MIR548AA1-201ENST00000384971 97 ntBASIC-1.22□□□□□ -2.6
CCDC28AQ8IWP9 MIR507-201ENST00000385234 94 ntBASIC-1.24□□□□□ -2.61
CCDC28AQ8IWP9 AP002795.1-201ENST00000534879 84 ntBASIC-1.24□□□□□ -2.61
CCDC28AQ8IWP9 AC103706.3-201ENST00000636297 85 ntBASIC-1.24□□□□□ -2.61
CCDC28AQ8IWP9 MIR4511-201ENST00000582784 87 ntBASIC-1.25□□□□□ -2.61
CCDC28AQ8IWP9 SNORD60.1-201ENST00000362451 73 ntBASIC-1.26□□□□□ -2.61
CCDC28AQ8IWP9 SNORA25.5-201ENST00000363782 126 ntBASIC-1.26□□□□□ -2.61
CCDC28AQ8IWP9 MIR29B1-201ENST00000385015 81 ntBASIC-1.27□□□□□ -2.61
CCDC28AQ8IWP9 Y_RNA.178-201ENST00000363832 102 ntBASIC-1.28□□□□□ -2.61
CCDC28AQ8IWP9 RNU6-800P-201ENST00000384473 103 ntBASIC-1.28□□□□□ -2.61
CCDC28AQ8IWP9 MIR4499-201ENST00000584834 69 ntBASIC-1.28□□□□□ -2.61
CCDC28AQ8IWP9 uc_338.19-201ENST00000616808 99 ntBASIC-1.28□□□□□ -2.61
CCDC28AQ8IWP9 RNU6-995P-201ENST00000391244 107 ntBASIC-1.29□□□□□ -2.62
CCDC28AQ8IWP9 RNA5SP67-201ENST00000516422 131 ntBASIC-1.29□□□□□ -2.62
CCDC28AQ8IWP9 RNU6-172P-201ENST00000411000 93 ntBASIC-1.3□□□□□ -2.62
CCDC28AQ8IWP9 SPRY4-IT1_2.1-201ENST00000612613 121 ntBASIC-1.3□□□□□ -2.62
CCDC28AQ8IWP9 RNU6-1296P-201ENST00000383879 107 ntBASIC-1.31□□□□□ -2.62
CCDC28AQ8IWP9 RNU6-1111P-201ENST00000391118 107 ntBASIC-1.31□□□□□ -2.62
CCDC28AQ8IWP9 RNU6-122P-201ENST00000516818 107 ntBASIC-1.31□□□□□ -2.62
CCDC28AQ8IWP9 RNU6-1267P-201ENST00000410747 107 ntBASIC-1.32□□□□□ -2.62
CCDC28AQ8IWP9 RNU6-638P-201ENST00000516582 104 ntBASIC-1.32□□□□□ -2.62
CCDC28AQ8IWP9 RNA5SP192-201ENST00000364404 120 ntBASIC-1.33□□□□□ -2.62
CCDC28AQ8IWP9 MIR6738-201ENST00000619620 64 ntBASIC-1.33□□□□□ -2.62
CCDC28AQ8IWP9 MIR6818-201ENST00000621576 65 ntBASIC-1.33□□□□□ -2.62
CCDC28AQ8IWP9 RNA5SP476-201ENST00000516613 103 ntBASIC-1.34□□□□□ -2.62
CCDC28AQ8IWP9 RNY1P9-201ENST00000532431 109 ntBASIC-1.34□□□□□ -2.62
CCDC28AQ8IWP9 RNA5SP26-201ENST00000362406 119 ntBASIC-1.35□□□□□ -2.63
CCDC28AQ8IWP9 RNU7-151P-201ENST00000516930 53 ntBASIC-1.35□□□□□ -2.63
CCDC28AQ8IWP9 MIR3170-201ENST00000582699 77 ntBASIC-1.35□□□□□ -2.63
CCDC28AQ8IWP9 AC114801.3-201ENST00000510231 177 ntBASIC-1.36□□□□□ -2.63
CCDC28AQ8IWP9 MIR4324-201ENST00000584846 72 ntBASIC-1.36□□□□□ -2.63
CCDC28AQ8IWP9 RNU6-247P-201ENST00000362636 107 ntBASIC-1.37□□□□□ -2.63
CCDC28AQ8IWP9 RNU6-940P-201ENST00000363433 104 ntBASIC-1.37□□□□□ -2.63
CCDC28AQ8IWP9 ULK3-223ENST00000631115 126 ntTSL 5 BASIC-1.37□□□□□ -2.63
CCDC28AQ8IWP9 HAR1A.1-201ENST00000459583 118 ntBASIC-1.38□□□□□ -2.63
CCDC28AQ8IWP9 MIR7110-201ENST00000612638 86 ntBASIC-1.38□□□□□ -2.63
Retrieved 100 of 98,524 protein–RNA pairs in 61.5 ms