Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 MTND4LP19-201ENST00000403051 166 ntBASIC-0.16□□□□□ -2.44
RNF4P78317 SNORD4A-201ENST00000459174 72 ntBASIC-0.16□□□□□ -2.44
RNF4P78317 RNU6-1174P-201ENST00000517278 101 ntBASIC-0.16□□□□□ -2.44
RNF4P78317 MIR3666-201ENST00000607845 111 ntBASIC-0.16□□□□□ -2.44
RNF4P78317 Y_RNA.68-201ENST00000362881 102 ntBASIC-0.17□□□□□ -2.44
RNF4P78317 Y_RNA.613-201ENST00000410726 97 ntBASIC-0.17□□□□□ -2.44
RNF4P78317 MIR6759-201ENST00000638110 65 ntBASIC-0.17□□□□□ -2.44
RNF4P78317 MIR4788-201ENST00000639104 80 ntBASIC-0.17□□□□□ -2.44
RNF4P78317 RNU6-1312P-201ENST00000362425 108 ntBASIC-0.19□□□□□ -2.44
RNF4P78317 SNORD114-11-201ENST00000363738 75 ntBASIC-0.19□□□□□ -2.44
RNF4P78317 RNU6-810P-201ENST00000364001 107 ntBASIC-0.19□□□□□ -2.44
RNF4P78317 RNU6-1238P-201ENST00000517215 102 ntBASIC-0.19□□□□□ -2.44
RNF4P78317 SNORD113-4-201ENST00000364802 75 ntBASIC-0.2□□□□□ -2.44
RNF4P78317 SNORA40.16-201ENST00000517238 121 ntBASIC-0.2□□□□□ -2.44
RNF4P78317 SNORD18.2-201ENST00000459604 70 ntBASIC-0.21□□□□□ -2.44
RNF4P78317 MIR214-201ENST00000385214 110 ntBASIC-0.22□□□□□ -2.44
RNF4P78317 RNU6-732P-201ENST00000516033 103 ntBASIC-0.22□□□□□ -2.44
RNF4P78317 SNORD22.1-201ENST00000516331 125 ntBASIC-0.22□□□□□ -2.44
RNF4P78317 RNU7-151P-201ENST00000516930 53 ntBASIC-0.22□□□□□ -2.44
RNF4P78317 RNA5SP169-201ENST00000517268 117 ntBASIC-0.22□□□□□ -2.44
RNF4P78317 SPRY4-IT1_2.1-201ENST00000612613 121 ntBASIC-0.22□□□□□ -2.44
RNF4P78317 Y_RNA.185-201ENST00000363894 100 ntBASIC-0.23□□□□□ -2.45
RNF4P78317 SNORA40B-201ENST00000385573 128 ntBASIC-0.23□□□□□ -2.45
RNF4P78317 SNORD57-201ENST00000448188 72 ntBASIC-0.23□□□□□ -2.45
RNF4P78317 SNORD63.1-201ENST00000516178 80 ntBASIC-0.23□□□□□ -2.45
RNF4P78317 SNORD114-31-201ENST00000363219 75 ntBASIC-0.24□□□□□ -2.45
RNF4P78317 MIR518B-201ENST00000385127 83 ntBASIC-0.24□□□□□ -2.45
RNF4P78317 MIR204-201ENST00000385200 110 ntBASIC-0.24□□□□□ -2.45
RNF4P78317 RNA5SP300-201ENST00000391197 107 ntBASIC-0.24□□□□□ -2.45
RNF4P78317 IGLVI-20-201ENST00000519296 130 ntBASIC-0.24□□□□□ -2.45
RNF4P78317 RNU6-1233P-201ENST00000362922 102 ntBASIC-0.25□□□□□ -2.45
RNF4P78317 RNU6-614P-201ENST00000384369 107 ntBASIC-0.25□□□□□ -2.45
RNF4P78317 MIR548AA1-201ENST00000384971 97 ntBASIC-0.25□□□□□ -2.45
RNF4P78317 RNU6-1267P-201ENST00000410747 107 ntBASIC-0.25□□□□□ -2.45
RNF4P78317 MIR4802-201ENST00000581881 80 ntBASIC-0.25□□□□□ -2.45
RNF4P78317 U6.59-201ENST00000615686 107 ntBASIC-0.25□□□□□ -2.45
RNF4P78317 RNU6-995P-201ENST00000391244 107 ntBASIC-0.26□□□□□ -2.45
RNF4P78317 MIR5589-201ENST00000579442 60 ntBASIC-0.27□□□□□ -2.45
RNF4P78317 MIR4636-201ENST00000582271 80 ntBASIC-0.27□□□□□ -2.45
RNF4P78317 Y_RNA.433-201ENST00000384089 102 ntBASIC-0.28□□□□□ -2.45
RNF4P78317 Y_RNA.696-201ENST00000516725 107 ntBASIC-0.28□□□□□ -2.45
RNF4P78317 SNORD74.6-201ENST00000364796 70 ntBASIC-0.29□□□□□ -2.46
RNF4P78317 RNU6-35P-201ENST00000384530 107 ntBASIC-0.29□□□□□ -2.46
RNF4P78317 SNORD75.1-201ENST00000408373 60 ntBASIC-0.29□□□□□ -2.46
RNF4P78317 MIR3179-1-201ENST00000578940 84 ntBASIC-0.29□□□□□ -2.46
RNF4P78317 MIR3179-2-201ENST00000579107 84 ntBASIC-0.29□□□□□ -2.46
RNF4P78317 MIR3179-3-201ENST00000579566 84 ntBASIC-0.29□□□□□ -2.46
RNF4P78317 MIR4490-201ENST00000582647 84 ntBASIC-0.29□□□□□ -2.46
RNF4P78317 MIR3179-4-201ENST00000617599 84 ntBASIC-0.29□□□□□ -2.46
RNF4P78317 MIR7978-201ENST00000636158 59 ntBASIC-0.29□□□□□ -2.46
RNF4P78317 MIR548Q-201ENST00000408404 100 ntBASIC-0.3□□□□□ -2.46
RNF4P78317 AP000533.3-201ENST00000447704 118 ntBASIC-0.3□□□□□ -2.46
RNF4P78317 RNU6-320P-201ENST00000516511 106 ntBASIC-0.3□□□□□ -2.46
RNF4P78317 RNU6-1250P-201ENST00000391218 107 ntBASIC-0.31□□□□□ -2.46
RNF4P78317 MIR4645-201ENST00000583158 77 ntBASIC-0.31□□□□□ -2.46
RNF4P78317 TRGJP-201ENST00000390338 61 ntAPPRIS P1 BASIC-0.32□□□□□ -2.46
RNF4P78317 AP001180.6-201ENST00000584918 159 ntBASIC-0.32□□□□□ -2.46
RNF4P78317 Y_RNA.69-201ENST00000362885 109 ntBASIC-0.34□□□□□ -2.46
RNF4P78317 SNORD114-28-201ENST00000363610 72 ntBASIC-0.34□□□□□ -2.46
RNF4P78317 MIR196A2-201ENST00000385189 110 ntBASIC-0.34□□□□□ -2.46
RNF4P78317 SNORD19-201ENST00000391191 68 ntBASIC-0.34□□□□□ -2.46
RNF4P78317 Y_RNA.178-201ENST00000363832 102 ntBASIC-0.35□□□□□ -2.47
RNF4P78317 RNA5SP275-201ENST00000363936 118 ntBASIC-0.35□□□□□ -2.47
RNF4P78317 Y_RNA.391-201ENST00000383933 94 ntBASIC-0.35□□□□□ -2.47
RNF4P78317 RNU7-160P-201ENST00000516660 62 ntBASIC-0.35□□□□□ -2.47
RNF4P78317 SNORD114-17-201ENST00000364699 75 ntBASIC-0.36□□□□□ -2.47
RNF4P78317 RNU6-721P-201ENST00000410155 105 ntBASIC-0.36□□□□□ -2.47
RNF4P78317 SNORA13-201ENST00000458790 133 ntBASIC-0.36□□□□□ -2.47
RNF4P78317 SNORD126-201ENST00000459475 77 ntBASIC-0.36□□□□□ -2.47
RNF4P78317 MIR4493-201ENST00000584016 73 ntBASIC-0.36□□□□□ -2.47
RNF4P78317 SNORA26.4-201ENST00000391188 123 ntBASIC-0.37□□□□□ -2.47
RNF4P78317 MIR3170-201ENST00000582699 77 ntBASIC-0.37□□□□□ -2.47
RNF4P78317 MIR4436A-201ENST00000585278 85 ntBASIC-0.37□□□□□ -2.47
RNF4P78317 MIR125B1-201ENST00000385236 88 ntBASIC-0.38□□□□□ -2.47
RNF4P78317 MIR101-1-201ENST00000362265 75 ntBASIC-0.39□□□□□ -2.47
RNF4P78317 RNU6-247P-201ENST00000362636 107 ntBASIC-0.39□□□□□ -2.47
RNF4P78317 SNORD14C-201ENST00000365382 88 ntBASIC-0.39□□□□□ -2.47
RNF4P78317 AP002795.1-201ENST00000534879 84 ntBASIC-0.39□□□□□ -2.47
RNF4P78317 Y_RNA.189-201ENST00000363959 112 ntBASIC-0.4□□□□□ -2.47
RNF4P78317 RNU6-936P-201ENST00000384005 107 ntBASIC-0.4□□□□□ -2.47
RNF4P78317 RNU6-1111P-201ENST00000391118 107 ntBASIC-0.4□□□□□ -2.47
RNF4P78317 RNU6-284P-201ENST00000411105 106 ntBASIC-0.4□□□□□ -2.47
RNF4P78317 RNU6-758P-201ENST00000516292 89 ntBASIC-0.4□□□□□ -2.47
RNF4P78317 MIR6086-201ENST00000638065 55 ntBASIC-0.4□□□□□ -2.47
RNF4P78317 MIR604-201ENST00000384880 94 ntBASIC-0.41□□□□□ -2.48
RNF4P78317 Z95118.1-201ENST00000421372 247 ntBASIC-0.41□□□□□ -2.48
RNF4P78317 AL353691.2-201ENST00000443795 59 ntBASIC-0.41□□□□□ -2.48
RNF4P78317 SNORD63.2-201ENST00000516303 64 ntBASIC-0.41□□□□□ -2.48
RNF4P78317 RNU6-1206P-201ENST00000516339 103 ntBASIC-0.41□□□□□ -2.48
RNF4P78317 MIR8064-201ENST00000612863 90 ntBASIC-0.41□□□□□ -2.48
RNF4P78317 Y_RNA.139-201ENST00000363464 102 ntBASIC-0.42□□□□□ -2.48
RNF4P78317 RNU6-828P-201ENST00000364876 107 ntBASIC-0.42□□□□□ -2.48
RNF4P78317 RNU6-987P-201ENST00000384759 104 ntBASIC-0.42□□□□□ -2.48
RNF4P78317 SNORD115-33-201ENST00000363723 82 ntBASIC-0.43□□□□□ -2.48
RNF4P78317 MIR520D-201ENST00000385002 87 ntBASIC-0.43□□□□□ -2.48
RNF4P78317 RNA5SP368-201ENST00000364298 116 ntBASIC-0.44□□□□□ -2.48
RNF4P78317 SNORA32.3-201ENST00000384772 121 ntBASIC-0.44□□□□□ -2.48
RNF4P78317 RNU4-37P-201ENST00000410214 84 ntBASIC-0.44□□□□□ -2.48
RNF4P78317 AC021146.6-201ENST00000514659 117 ntBASIC-0.44□□□□□ -2.48
RNF4P78317 MTRNR2L9-201ENST00000622562 75 ntBASIC-0.44□□□□□ -2.48
Retrieved 100 of 98,524 protein–RNA pairs in 12.2 ms