Protein–RNA interactions for Protein: P49639

HOXA1, Homeobox protein Hox-A1, humanhuman

Predicted RBP Predictions only

Length 335 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA1P49639 SNORA26.4-201ENST00000391188 123 ntBASIC-0.4□□□□□ -2.47
HOXA1P49639 MIR4499-201ENST00000584834 69 ntBASIC-0.4□□□□□ -2.47
HOXA1P49639 Y_RNA.74-201ENST00000362911 99 ntBASIC-0.41□□□□□ -2.48
HOXA1P49639 Y_RNA.375-201ENST00000365625 101 ntBASIC-0.41□□□□□ -2.48
HOXA1P49639 MIR527-201ENST00000385244 85 ntBASIC-0.41□□□□□ -2.48
HOXA1P49639 TRAJ9-201ENST00000390528 61 ntAPPRIS P1 BASIC-0.41□□□□□ -2.48
HOXA1P49639 MIR8485-201ENST00000401372 91 ntBASIC-0.41□□□□□ -2.48
HOXA1P49639 Y_RNA.613-201ENST00000410726 97 ntBASIC-0.41□□□□□ -2.48
HOXA1P49639 RNU6-1262P-201ENST00000516217 96 ntBASIC-0.41□□□□□ -2.48
HOXA1P49639 MIR8053-201ENST00000613344 75 ntBASIC-0.41□□□□□ -2.48
HOXA1P49639 RNU6-668P-201ENST00000364180 107 ntBASIC-0.42□□□□□ -2.48
HOXA1P49639 MIR604-201ENST00000384880 94 ntBASIC-0.42□□□□□ -2.48
HOXA1P49639 MIR579-201ENST00000385221 98 ntBASIC-0.42□□□□□ -2.48
HOXA1P49639 MIR507-201ENST00000385234 94 ntBASIC-0.42□□□□□ -2.48
HOXA1P49639 RNU6-279P-201ENST00000391297 101 ntBASIC-0.42□□□□□ -2.48
HOXA1P49639 RNU6-1267P-201ENST00000410747 107 ntBASIC-0.42□□□□□ -2.48
HOXA1P49639 SNORD57-201ENST00000448188 72 ntBASIC-0.42□□□□□ -2.48
HOXA1P49639 SNORA13-201ENST00000458790 133 ntBASIC-0.42□□□□□ -2.48
HOXA1P49639 U7.4-201ENST00000614961 63 ntBASIC-0.42□□□□□ -2.48
HOXA1P49639 uc_338.19-201ENST00000616808 99 ntBASIC-0.42□□□□□ -2.48
HOXA1P49639 MTRNR2L9-201ENST00000622562 75 ntBASIC-0.42□□□□□ -2.48
HOXA1P49639 RNU6-1216P-201ENST00000362590 107 ntBASIC-0.43□□□□□ -2.48
HOXA1P49639 RNU6-924P-201ENST00000362926 108 ntBASIC-0.43□□□□□ -2.48
HOXA1P49639 RNA5SP368-201ENST00000364298 116 ntBASIC-0.43□□□□□ -2.48
HOXA1P49639 RNU6-608P-201ENST00000383927 104 ntBASIC-0.43□□□□□ -2.48
HOXA1P49639 RNU6-974P-201ENST00000384099 108 ntBASIC-0.43□□□□□ -2.48
HOXA1P49639 SNORD116-16-201ENST00000384533 92 ntBASIC-0.43□□□□□ -2.48
HOXA1P49639 Y_RNA.545-201ENST00000384652 105 ntBASIC-0.43□□□□□ -2.48
HOXA1P49639 RNU6-630P-201ENST00000391258 106 ntBASIC-0.43□□□□□ -2.48
HOXA1P49639 RNU6-758P-201ENST00000516292 89 ntBASIC-0.43□□□□□ -2.48
HOXA1P49639 RNA5SP451-201ENST00000410588 110 ntBASIC-0.44□□□□□ -2.48
HOXA1P49639 Z95118.1-201ENST00000421372 247 ntBASIC-0.44□□□□□ -2.48
HOXA1P49639 MIR6818-201ENST00000621576 65 ntBASIC-0.44□□□□□ -2.48
HOXA1P49639 MIR5683-201ENST00000636514 76 ntBASIC-0.44□□□□□ -2.48
HOXA1P49639 SNORD115-33-201ENST00000363723 82 ntBASIC-0.45□□□□□ -2.48
HOXA1P49639 Y_RNA.443-201ENST00000384135 111 ntBASIC-0.45□□□□□ -2.48
HOXA1P49639 RNU6-24P-201ENST00000384440 107 ntBASIC-0.45□□□□□ -2.48
HOXA1P49639 RNU6-696P-201ENST00000390834 107 ntBASIC-0.45□□□□□ -2.48
HOXA1P49639 MTND4LP1-201ENST00000446263 157 ntBASIC-0.45□□□□□ -2.48
HOXA1P49639 AC090616.4-201ENST00000448026 115 ntBASIC-0.45□□□□□ -2.48
HOXA1P49639 RNU6-634P-201ENST00000459134 106 ntBASIC-0.45□□□□□ -2.48
HOXA1P49639 SCARNA21.1-201ENST00000515996 128 ntBASIC-0.45□□□□□ -2.48
HOXA1P49639 RNU6-1236P-201ENST00000517080 99 ntBASIC-0.45□□□□□ -2.48
HOXA1P49639 MIR6874-201ENST00000635894 71 ntBASIC-0.45□□□□□ -2.48
HOXA1P49639 MIR6086-201ENST00000638065 55 ntBASIC-0.45□□□□□ -2.48
HOXA1P49639 Y_RNA.178-201ENST00000363832 102 ntBASIC-0.46□□□□□ -2.48
HOXA1P49639 RNU6-563P-201ENST00000364872 108 ntBASIC-0.46□□□□□ -2.48
HOXA1P49639 RNU6-895P-201ENST00000384125 103 ntBASIC-0.46□□□□□ -2.48
HOXA1P49639 RNU6-411P-201ENST00000384451 107 ntBASIC-0.46□□□□□ -2.48
HOXA1P49639 MIR548Q-201ENST00000408404 100 ntBASIC-0.46□□□□□ -2.48
HOXA1P49639 RNU6-172P-201ENST00000411000 93 ntBASIC-0.46□□□□□ -2.48
HOXA1P49639 AL353691.2-201ENST00000443795 59 ntBASIC-0.46□□□□□ -2.48
HOXA1P49639 MIR7978-201ENST00000636158 59 ntBASIC-0.46□□□□□ -2.48
HOXA1P49639 SNORD60.1-201ENST00000362451 73 ntBASIC-0.47□□□□□ -2.48
HOXA1P49639 Y_RNA.565-201ENST00000384719 101 ntBASIC-0.47□□□□□ -2.48
HOXA1P49639 RNU6-663P-201ENST00000391105 106 ntBASIC-0.47□□□□□ -2.48
HOXA1P49639 RNU7-151P-201ENST00000516930 53 ntBASIC-0.47□□□□□ -2.48
HOXA1P49639 MIR378F-201ENST00000578143 78 ntBASIC-0.47□□□□□ -2.48
HOXA1P49639 MIR3170-201ENST00000582699 77 ntBASIC-0.47□□□□□ -2.48
HOXA1P49639 AC020913.3-201ENST00000594678 125 ntTSL 3 BASIC-0.47□□□□□ -2.48
HOXA1P49639 AC005520.4-201ENST00000604337 90 ntBASIC-0.47□□□□□ -2.48
HOXA1P49639 RNA5SP215-201ENST00000363440 122 ntBASIC-0.48□□□□□ -2.49
HOXA1P49639 RNA5SP192-201ENST00000364404 120 ntBASIC-0.48□□□□□ -2.49
HOXA1P49639 SNORD83B-201ENST00000386745 93 ntBASIC-0.48□□□□□ -2.49
HOXA1P49639 RNU6-1275P-201ENST00000391087 107 ntBASIC-0.48□□□□□ -2.49
HOXA1P49639 SPRY4-IT1_2.1-201ENST00000612613 121 ntBASIC-0.48□□□□□ -2.49
HOXA1P49639 AC091912.2-201ENST00000624798 167 ntBASIC-0.48□□□□□ -2.49
HOXA1P49639 Y_RNA.386-201ENST00000383913 105 ntBASIC-0.49□□□□□ -2.49
HOXA1P49639 snoU83B.1-201ENST00000517136 88 ntBASIC-0.49□□□□□ -2.49
HOXA1P49639 MIR224-201ENST00000384889 81 ntBASIC-0.5□□□□□ -2.49
HOXA1P49639 SCARNA17-201ENST00000516183 144 ntBASIC-0.5□□□□□ -2.49
HOXA1P49639 Y_RNA.365-201ENST00000365537 102 ntBASIC-0.51□□□□□ -2.49
HOXA1P49639 MIR29B1-201ENST00000385015 81 ntBASIC-0.51□□□□□ -2.49
HOXA1P49639 SNORD30.1-201ENST00000391309 70 ntBASIC-0.51□□□□□ -2.49
HOXA1P49639 RNU6-92P-201ENST00000605893 104 ntBASIC-0.51□□□□□ -2.49
HOXA1P49639 U6.111-201ENST00000636093 83 ntBASIC-0.51□□□□□ -2.49
HOXA1P49639 Y_RNA.139-201ENST00000363464 102 ntBASIC-0.52□□□□□ -2.49
HOXA1P49639 RNU6-810P-201ENST00000364001 107 ntBASIC-0.52□□□□□ -2.49
HOXA1P49639 RNU6-669P-201ENST00000365575 107 ntBASIC-0.52□□□□□ -2.49
HOXA1P49639 MIR125B1-201ENST00000385236 88 ntBASIC-0.52□□□□□ -2.49
HOXA1P49639 Y_RNA.603-201ENST00000410571 108 ntBASIC-0.52□□□□□ -2.49
HOXA1P49639 RNA5SP25-201ENST00000410815 110 ntBASIC-0.52□□□□□ -2.49
HOXA1P49639 RNY3P8-201ENST00000411366 126 ntBASIC-0.52□□□□□ -2.49
HOXA1P49639 SNORD63.2-201ENST00000516303 64 ntBASIC-0.52□□□□□ -2.49
HOXA1P49639 RNU6-542P-201ENST00000516405 103 ntBASIC-0.52□□□□□ -2.49
HOXA1P49639 RNU6-231P-201ENST00000517122 103 ntBASIC-0.52□□□□□ -2.49
HOXA1P49639 SNORA40.16-201ENST00000517238 121 ntBASIC-0.52□□□□□ -2.49
HOXA1P49639 MIR4490-201ENST00000582647 84 ntBASIC-0.52□□□□□ -2.49
HOXA1P49639 SNORA25.4-201ENST00000363666 124 ntBASIC-0.53□□□□□ -2.49
HOXA1P49639 RNU6-776P-201ENST00000364403 104 ntBASIC-0.53□□□□□ -2.49
HOXA1P49639 RNU6-1022P-201ENST00000365049 104 ntBASIC-0.53□□□□□ -2.49
HOXA1P49639 RNU4-63P-201ENST00000411313 118 ntBASIC-0.53□□□□□ -2.49
HOXA1P49639 SNORA72.7-201ENST00000516349 94 ntBASIC-0.53□□□□□ -2.49
HOXA1P49639 AC013734.1-201ENST00000619329 111 ntBASIC-0.53□□□□□ -2.49
HOXA1P49639 SNORA25.5-201ENST00000363782 126 ntBASIC-0.54□□□□□ -2.5
HOXA1P49639 SNORD95.1-201ENST00000364099 68 ntBASIC-0.54□□□□□ -2.5
HOXA1P49639 MIR548AA1-201ENST00000384971 97 ntBASIC-0.54□□□□□ -2.5
HOXA1P49639 SNORD116.2-201ENST00000391251 93 ntBASIC-0.54□□□□□ -2.5
HOXA1P49639 ULK3-223ENST00000631115 126 ntTSL 5 BASIC-0.54□□□□□ -2.5
HOXA1P49639 Y_RNA.69-201ENST00000362885 109 ntBASIC-0.55□□□□□ -2.5
Retrieved 100 of 98,524 protein–RNA pairs in 182.8 ms