Protein–RNA interactions for Protein: O95639

CPSF4, Cleavage and polyadenylation specificity factor subunit 4, humanhuman

Known RBP Predictions only

Length 269 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4O95639 RNU6-168P-201ENST00000516189 101 ntBASIC-1.4□□□□□ -2.63
CPSF4O95639 MIR4484-201ENST00000582855 83 ntBASIC-1.4□□□□□ -2.63
CPSF4O95639 U4.4-201ENST00000620626 117 ntBASIC-1.4□□□□□ -2.63
CPSF4O95639 RNU6-598P-201ENST00000364017 105 ntBASIC-1.41□□□□□ -2.64
CPSF4O95639 Y_RNA.219-201ENST00000364232 113 ntBASIC-1.41□□□□□ -2.64
CPSF4O95639 RNY4P18-201ENST00000391107 89 ntBASIC-1.41□□□□□ -2.64
CPSF4O95639 RNU6-630P-201ENST00000391258 106 ntBASIC-1.41□□□□□ -2.64
CPSF4O95639 MIR3671-201ENST00000580455 88 ntBASIC-1.41□□□□□ -2.64
CPSF4O95639 RNU6-228P-201ENST00000362700 106 ntBASIC-1.42□□□□□ -2.64
CPSF4O95639 RNU6-313P-201ENST00000516317 112 ntBASIC-1.42□□□□□ -2.64
CPSF4O95639 RNU6-118P-201ENST00000516552 102 ntBASIC-1.42□□□□□ -2.64
CPSF4O95639 MIR548V-201ENST00000584165 80 ntBASIC-1.42□□□□□ -2.64
CPSF4O95639 Y_RNA.223-201ENST00000364290 113 ntBASIC-1.43□□□□□ -2.64
CPSF4O95639 Y_RNA.228-201ENST00000364346 98 ntBASIC-1.43□□□□□ -2.64
CPSF4O95639 AC018880.2-201ENST00000414265 201 ntBASIC-1.43□□□□□ -2.64
CPSF4O95639 MTND4LP1-201ENST00000446263 157 ntBASIC-1.43□□□□□ -2.64
CPSF4O95639 MIR1297-201ENST00000637311 77 ntBASIC-1.43□□□□□ -2.64
CPSF4O95639 MIR488-201ENST00000365739 83 ntBASIC-1.44□□□□□ -2.64
CPSF4O95639 RNU6-608P-201ENST00000383927 104 ntBASIC-1.44□□□□□ -2.64
CPSF4O95639 RNU6-675P-201ENST00000384236 104 ntBASIC-1.45□□□□□ -2.64
CPSF4O95639 MIR630-201ENST00000384957 97 ntBASIC-1.45□□□□□ -2.64
CPSF4O95639 MT-TR-201ENST00000387439 65 ntBASIC-1.45□□□□□ -2.64
CPSF4O95639 TRAJ53-201ENST00000390485 66 ntAPPRIS P1 BASIC-1.45□□□□□ -2.64
CPSF4O95639 MIR548M-201ENST00000408260 86 ntBASIC-1.45□□□□□ -2.64
CPSF4O95639 AC006160.2-201ENST00000637708 154 ntBASIC-1.45□□□□□ -2.64
CPSF4O95639 Y_RNA.273-201ENST00000364703 102 ntBASIC-1.46□□□□□ -2.64
CPSF4O95639 RNU6-1152P-201ENST00000384576 107 ntBASIC-1.46□□□□□ -2.64
CPSF4O95639 MIR520D-201ENST00000385002 87 ntBASIC-1.46□□□□□ -2.64
CPSF4O95639 RNU6ATAC32P-201ENST00000516026 76 ntBASIC-1.46□□□□□ -2.64
CPSF4O95639 U2.18-201ENST00000622185 84 ntBASIC-1.46□□□□□ -2.64
CPSF4O95639 RNU6-668P-201ENST00000364180 107 ntBASIC-1.47□□□□□ -2.64
CPSF4O95639 RNU6-380P-201ENST00000410207 107 ntBASIC-1.47□□□□□ -2.64
CPSF4O95639 MIR8053-201ENST00000613344 75 ntBASIC-1.47□□□□□ -2.64
CPSF4O95639 SNORD113.1-201ENST00000363280 73 ntBASIC-1.48□□□□□ -2.65
CPSF4O95639 RNA5SP215-201ENST00000363440 122 ntBASIC-1.48□□□□□ -2.65
CPSF4O95639 RNU6-640P-201ENST00000363693 105 ntBASIC-1.48□□□□□ -2.65
CPSF4O95639 RNU6-755P-201ENST00000364400 103 ntBASIC-1.48□□□□□ -2.65
CPSF4O95639 Y_RNA.340-201ENST00000365330 92 ntBASIC-1.48□□□□□ -2.65
CPSF4O95639 RNU6-844P-201ENST00000517175 102 ntBASIC-1.48□□□□□ -2.65
CPSF4O95639 RNU6-79P-201ENST00000362511 107 ntBASIC-1.49□□□□□ -2.65
CPSF4O95639 MIR487B-201ENST00000385021 84 ntBASIC-1.49□□□□□ -2.65
CPSF4O95639 SNORD113-2-201ENST00000391082 72 ntBASIC-1.49□□□□□ -2.65
CPSF4O95639 RNU6-980P-201ENST00000516925 103 ntBASIC-1.49□□□□□ -2.65
CPSF4O95639 RNU6-32P-201ENST00000383948 107 ntBASIC-1.5□□□□□ -2.65
CPSF4O95639 RNU6-13P-201ENST00000384248 107 ntBASIC-1.5□□□□□ -2.65
CPSF4O95639 SNORD45A-201ENST00000384512 84 ntBASIC-1.5□□□□□ -2.65
CPSF4O95639 RNU6-12P-201ENST00000384604 107 ntBASIC-1.5□□□□□ -2.65
CPSF4O95639 RNU6-41P-201ENST00000384741 107 ntBASIC-1.5□□□□□ -2.65
CPSF4O95639 RNU6-400P-201ENST00000391173 106 ntBASIC-1.5□□□□□ -2.65
CPSF4O95639 AC108019.1-201ENST00000512540 175 ntBASIC-1.5□□□□□ -2.65
CPSF4O95639 SNORD116-16-201ENST00000384533 92 ntBASIC-1.51□□□□□ -2.65
CPSF4O95639 Y_RNA.678-201ENST00000516408 96 ntBASIC-1.51□□□□□ -2.65
CPSF4O95639 MIR4756-201ENST00000577874 78 ntBASIC-1.51□□□□□ -2.65
CPSF4O95639 MIR664A-201ENST00000626086 82 ntBASIC-1.51□□□□□ -2.65
CPSF4O95639 Y_RNA.17-201ENST00000362433 111 ntBASIC-1.52□□□□□ -2.65
CPSF4O95639 RNU6-1111P-201ENST00000391118 107 ntBASIC-1.52□□□□□ -2.65
CPSF4O95639 Y_RNA.607-201ENST00000410597 98 ntBASIC-1.52□□□□□ -2.65
CPSF4O95639 RNU6-1267P-201ENST00000410747 107 ntBASIC-1.52□□□□□ -2.65
CPSF4O95639 SNORD54-201ENST00000459159 67 ntBASIC-1.52□□□□□ -2.65
CPSF4O95639 MIR23C-201ENST00000579846 100 ntBASIC-1.52□□□□□ -2.65
CPSF4O95639 MIR3170-201ENST00000582699 77 ntBASIC-1.52□□□□□ -2.65
CPSF4O95639 RNU6-315P-201ENST00000362666 107 ntBASIC-1.53□□□□□ -2.65
CPSF4O95639 SNORA63.4-201ENST00000362763 126 ntBASIC-1.53□□□□□ -2.65
CPSF4O95639 MIR548AA1-201ENST00000384971 97 ntBASIC-1.53□□□□□ -2.65
CPSF4O95639 snoMBII-202.2-201ENST00000517263 86 ntBASIC-1.53□□□□□ -2.65
CPSF4O95639 MIR3910-1-201ENST00000580936 111 ntBASIC-1.53□□□□□ -2.65
CPSF4O95639 RNA5SP93-201ENST00000362525 114 ntBASIC-1.54□□□□□ -2.66
CPSF4O95639 RNA5SP173-201ENST00000364857 136 ntBASIC-1.54□□□□□ -2.66
CPSF4O95639 RNU6-1134P-201ENST00000365156 101 ntBASIC-1.54□□□□□ -2.66
CPSF4O95639 Y_RNA.403-201ENST00000383977 101 ntBASIC-1.54□□□□□ -2.66
CPSF4O95639 RNU6-147P-201ENST00000383983 107 ntBASIC-1.54□□□□□ -2.66
CPSF4O95639 Y_RNA.502-201ENST00000384478 113 ntBASIC-1.54□□□□□ -2.66
CPSF4O95639 SNORA41B-201ENST00000384785 128 ntBASIC-1.54□□□□□ -2.66
CPSF4O95639 MIR3139-201ENST00000579145 76 ntBASIC-1.54□□□□□ -2.66
CPSF4O95639 MIR664B-201ENST00000626756 61 ntBASIC-1.54□□□□□ -2.66
CPSF4O95639 Y_RNA.593-201ENST00000410292 98 ntBASIC-1.55□□□□□ -2.66
CPSF4O95639 Y_RNA.73-201ENST00000362910 113 ntBASIC-1.56□□□□□ -2.66
CPSF4O95639 SNORD1B-201ENST00000363091 84 ntBASIC-1.56□□□□□ -2.66
CPSF4O95639 RNU6-1094P-201ENST00000362416 104 ntBASIC-1.57□□□□□ -2.66
CPSF4O95639 RNY4P7-201ENST00000364600 96 ntBASIC-1.57□□□□□ -2.66
CPSF4O95639 Y_RNA.316-201ENST00000365118 111 ntBASIC-1.57□□□□□ -2.66
CPSF4O95639 Y_RNA.629-201ENST00000411368 105 ntBASIC-1.57□□□□□ -2.66
CPSF4O95639 IGLL4P-201ENST00000614590 133 ntBASIC-1.57□□□□□ -2.66
CPSF4O95639 RNU6-247P-201ENST00000362636 107 ntBASIC-1.58□□□□□ -2.66
CPSF4O95639 AC120024.2-201ENST00000576526 175 ntBASIC-1.58□□□□□ -2.66
CPSF4O95639 MIR5588-201ENST00000581890 63 ntBASIC-1.58□□□□□ -2.66
CPSF4O95639 SPRY4-IT1_2.1-201ENST00000612613 121 ntBASIC-1.58□□□□□ -2.66
CPSF4O95639 RNY1P1-201ENST00000364372 112 ntBASIC-1.59□□□□□ -2.66
CPSF4O95639 SNORD113-1-201ENST00000365321 69 ntBASIC-1.59□□□□□ -2.66
CPSF4O95639 MT-TM-201ENST00000387377 68 ntBASIC-1.59□□□□□ -2.66
CPSF4O95639 RNU6-258P-201ENST00000390884 101 ntBASIC-1.59□□□□□ -2.66
CPSF4O95639 Y_RNA.284-201ENST00000364806 102 ntBASIC-1.6□□□□□ -2.67
CPSF4O95639 Y_RNA.421-201ENST00000384052 101 ntBASIC-1.6□□□□□ -2.67
CPSF4O95639 RNU6-1241P-201ENST00000384536 107 ntBASIC-1.6□□□□□ -2.67
CPSF4O95639 RNU6-1081P-201ENST00000384537 107 ntBASIC-1.6□□□□□ -2.67
CPSF4O95639 Y_RNA.564-201ENST00000384708 106 ntBASIC-1.6□□□□□ -2.67
CPSF4O95639 Y_RNA.699-201ENST00000516803 93 ntBASIC-1.6□□□□□ -2.67
CPSF4O95639 LINC01984-201ENST00000583863 301 ntTSL 3 BASIC-1.6□□□□□ -2.67
CPSF4O95639 RNU6-563P-201ENST00000364872 108 ntBASIC-1.61□□□□□ -2.67
CPSF4O95639 RNU6-1131P-201ENST00000364955 107 ntBASIC-1.61□□□□□ -2.67
Retrieved 100 of 98,524 protein–RNA pairs in 63.9 ms