Protein–RNA interactions for Protein: Q9UKF6

CPSF3, Cleavage and polyadenylation specificity factor subunit 3, humanhuman

Known RBP Predictions only

Length 684 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3Q9UKF6 RNU6-1134P-201ENST00000365156 101 ntBASIC-1.18□□□□□ -2.6
CPSF3Q9UKF6 RNU6-431P-201ENST00000383874 107 ntBASIC-1.18□□□□□ -2.6
CPSF3Q9UKF6 MIR147A-201ENST00000385079 72 ntBASIC-1.18□□□□□ -2.6
CPSF3Q9UKF6 Y_RNA.593-201ENST00000410292 98 ntBASIC-1.18□□□□□ -2.6
CPSF3Q9UKF6 RNA5SP89-201ENST00000410300 108 ntBASIC-1.18□□□□□ -2.6
CPSF3Q9UKF6 RNU6-49P-201ENST00000384256 107 ntBASIC-1.19□□□□□ -2.6
CPSF3Q9UKF6 snoMBII-202.2-201ENST00000517263 86 ntBASIC-1.19□□□□□ -2.6
CPSF3Q9UKF6 SNORD64-201ENST00000386683 67 ntBASIC-1.2□□□□□ -2.6
CPSF3Q9UKF6 RNU6-1236P-201ENST00000517080 99 ntBASIC-1.2□□□□□ -2.6
CPSF3Q9UKF6 RNY1P9-201ENST00000532431 109 ntBASIC-1.21□□□□□ -2.6
CPSF3Q9UKF6 RNU6-604P-201ENST00000390917 100 ntBASIC-1.22□□□□□ -2.6
CPSF3Q9UKF6 Y_RNA.73-201ENST00000362910 113 ntBASIC-1.23□□□□□ -2.61
CPSF3Q9UKF6 Y_RNA.219-201ENST00000364232 113 ntBASIC-1.23□□□□□ -2.61
CPSF3Q9UKF6 AL500527.2-201ENST00000454105 95 ntBASIC-1.23□□□□□ -2.61
CPSF3Q9UKF6 RNU6-807P-201ENST00000516805 107 ntBASIC-1.23□□□□□ -2.61
CPSF3Q9UKF6 MIR548AG1-201ENST00000579932 66 ntBASIC-1.23□□□□□ -2.61
CPSF3Q9UKF6 Y_RNA.607-201ENST00000410597 98 ntBASIC-1.24□□□□□ -2.61
CPSF3Q9UKF6 MIR4484-201ENST00000582855 83 ntBASIC-1.24□□□□□ -2.61
CPSF3Q9UKF6 FAS-AS1.1-201ENST00000615327 126 ntBASIC-1.25□□□□□ -2.61
CPSF3Q9UKF6 MIR6738-201ENST00000619620 64 ntBASIC-1.25□□□□□ -2.61
CPSF3Q9UKF6 SNORD45.1-201ENST00000363181 77 ntBASIC-1.26□□□□□ -2.61
CPSF3Q9UKF6 MIR548C-201ENST00000384815 97 ntBASIC-1.26□□□□□ -2.61
CPSF3Q9UKF6 RNY1P1-201ENST00000364372 112 ntBASIC-1.27□□□□□ -2.61
CPSF3Q9UKF6 MIR587-201ENST00000384845 96 ntBASIC-1.27□□□□□ -2.61
CPSF3Q9UKF6 Y_RNA.613-201ENST00000410726 97 ntBASIC-1.27□□□□□ -2.61
CPSF3Q9UKF6 RNU6-982P-201ENST00000516216 102 ntBASIC-1.27□□□□□ -2.61
CPSF3Q9UKF6 MIR5588-201ENST00000581890 63 ntBASIC-1.27□□□□□ -2.61
CPSF3Q9UKF6 IGLL4P-201ENST00000614590 133 ntBASIC-1.27□□□□□ -2.61
CPSF3Q9UKF6 MIR382-201ENST00000637119 76 ntBASIC-1.27□□□□□ -2.61
CPSF3Q9UKF6 MIR1297-201ENST00000637311 77 ntBASIC-1.27□□□□□ -2.61
CPSF3Q9UKF6 SNORA26.4-201ENST00000391188 123 ntBASIC-1.28□□□□□ -2.61
CPSF3Q9UKF6 MIR4499-201ENST00000584834 69 ntBASIC-1.28□□□□□ -2.61
CPSF3Q9UKF6 RNU6-1233P-201ENST00000362922 102 ntBASIC-1.29□□□□□ -2.62
CPSF3Q9UKF6 RNU6-153P-201ENST00000364422 104 ntBASIC-1.29□□□□□ -2.62
CPSF3Q9UKF6 RNU6-10P-201ENST00000384036 107 ntBASIC-1.29□□□□□ -2.62
CPSF3Q9UKF6 Y_RNA.426-201ENST00000384068 113 ntBASIC-1.29□□□□□ -2.62
CPSF3Q9UKF6 Y_RNA.514-201ENST00000384528 112 ntBASIC-1.29□□□□□ -2.62
CPSF3Q9UKF6 uc_338.19-201ENST00000616808 99 ntBASIC-1.29□□□□□ -2.62
CPSF3Q9UKF6 MIR409-201ENST00000362237 79 ntBASIC-1.3□□□□□ -2.62
CPSF3Q9UKF6 RNU6-979P-201ENST00000383896 107 ntBASIC-1.3□□□□□ -2.62
CPSF3Q9UKF6 RNU7-174P-201ENST00000516248 59 ntBASIC-1.3□□□□□ -2.62
CPSF3Q9UKF6 MIR4324-201ENST00000584846 72 ntBASIC-1.3□□□□□ -2.62
CPSF3Q9UKF6 RNU6-315P-201ENST00000362666 107 ntBASIC-1.31□□□□□ -2.62
CPSF3Q9UKF6 RNU6-246P-201ENST00000384702 107 ntBASIC-1.31□□□□□ -2.62
CPSF3Q9UKF6 RNU6-380P-201ENST00000410207 107 ntBASIC-1.31□□□□□ -2.62
CPSF3Q9UKF6 RNY4P30-201ENST00000410216 95 ntBASIC-1.31□□□□□ -2.62
CPSF3Q9UKF6 SNORD63.1-201ENST00000516178 80 ntBASIC-1.31□□□□□ -2.62
CPSF3Q9UKF6 SNORD115-33-201ENST00000363723 82 ntBASIC-1.32□□□□□ -2.62
CPSF3Q9UKF6 Y_RNA.316-201ENST00000365118 111 ntBASIC-1.32□□□□□ -2.62
CPSF3Q9UKF6 RNU6-1089P-201ENST00000516473 104 ntBASIC-1.32□□□□□ -2.62
CPSF3Q9UKF6 Y_RNA.583-201ENST00000391033 113 ntBASIC-1.33□□□□□ -2.62
CPSF3Q9UKF6 SNORD115-22-201ENST00000364456 82 ntBASIC-1.34□□□□□ -2.62
CPSF3Q9UKF6 TRAJ53-201ENST00000390485 66 ntAPPRIS P1 BASIC-1.34□□□□□ -2.62
CPSF3Q9UKF6 RNU7-88P-201ENST00000458752 63 ntBASIC-1.35□□□□□ -2.63
CPSF3Q9UKF6 snoU83B.1-201ENST00000517136 88 ntBASIC-1.35□□□□□ -2.63
CPSF3Q9UKF6 RNU6-1238P-201ENST00000517215 102 ntBASIC-1.35□□□□□ -2.63
CPSF3Q9UKF6 U7.5-201ENST00000517224 61 ntBASIC-1.35□□□□□ -2.63
CPSF3Q9UKF6 RNU7-171P-201ENST00000459581 62 ntBASIC-1.36□□□□□ -2.63
CPSF3Q9UKF6 RNU6-732P-201ENST00000516033 103 ntBASIC-1.36□□□□□ -2.63
CPSF3Q9UKF6 MIR378F-201ENST00000578143 78 ntBASIC-1.36□□□□□ -2.63
CPSF3Q9UKF6 RNA5SP266-201ENST00000410273 108 ntBASIC-1.37□□□□□ -2.63
CPSF3Q9UKF6 SCARNA18B-201ENST00000458806 135 ntBASIC-1.37□□□□□ -2.63
CPSF3Q9UKF6 MIR664A-201ENST00000626086 82 ntBASIC-1.37□□□□□ -2.63
CPSF3Q9UKF6 RNU6-24P-201ENST00000384440 107 ntBASIC-1.38□□□□□ -2.63
CPSF3Q9UKF6 MIR8053-201ENST00000613344 75 ntBASIC-1.39□□□□□ -2.63
CPSF3Q9UKF6 RNU6-1094P-201ENST00000362416 104 ntBASIC-1.4□□□□□ -2.63
CPSF3Q9UKF6 Y_RNA.74-201ENST00000362911 99 ntBASIC-1.4□□□□□ -2.63
CPSF3Q9UKF6 Y_RNA.313-201ENST00000365095 103 ntBASIC-1.4□□□□□ -2.63
CPSF3Q9UKF6 Y_RNA.325-201ENST00000365171 122 ntBASIC-1.4□□□□□ -2.63
CPSF3Q9UKF6 AL353691.2-201ENST00000443795 59 ntBASIC-1.4□□□□□ -2.63
CPSF3Q9UKF6 MTND4LP1-201ENST00000446263 157 ntBASIC-1.4□□□□□ -2.63
CPSF3Q9UKF6 Y_RNA.694-201ENST00000516677 117 ntBASIC-1.4□□□□□ -2.63
CPSF3Q9UKF6 SNORD113.1-201ENST00000363280 73 ntBASIC-1.41□□□□□ -2.64
CPSF3Q9UKF6 RNU6-587P-201ENST00000391282 106 ntBASIC-1.41□□□□□ -2.64
CPSF3Q9UKF6 MIR4712-201ENST00000583750 82 ntBASIC-1.41□□□□□ -2.64
CPSF3Q9UKF6 MIR494-201ENST00000349529 81 ntBASIC-1.42□□□□□ -2.64
CPSF3Q9UKF6 RNU6-698P-201ENST00000363523 107 ntBASIC-1.42□□□□□ -2.64
CPSF3Q9UKF6 RNU6-34P-201ENST00000364874 107 ntBASIC-1.42□□□□□ -2.64
CPSF3Q9UKF6 RNU6-458P-201ENST00000384179 107 ntBASIC-1.42□□□□□ -2.64
CPSF3Q9UKF6 SNORD45A-201ENST00000384512 84 ntBASIC-1.42□□□□□ -2.64
CPSF3Q9UKF6 RNU6-1174P-201ENST00000517278 101 ntBASIC-1.42□□□□□ -2.64
CPSF3Q9UKF6 MIR4306-201ENST00000583390 91 ntBASIC-1.42□□□□□ -2.64
CPSF3Q9UKF6 U6.58-201ENST00000613107 107 ntBASIC-1.42□□□□□ -2.64
CPSF3Q9UKF6 U4.4-201ENST00000620626 117 ntBASIC-1.42□□□□□ -2.64
CPSF3Q9UKF6 Y_RNA.236-201ENST00000364427 111 ntBASIC-1.43□□□□□ -2.64
CPSF3Q9UKF6 Y_RNA.457-201ENST00000384237 111 ntBASIC-1.43□□□□□ -2.64
CPSF3Q9UKF6 RNU6ATAC17P-201ENST00000516074 71 ntBASIC-1.43□□□□□ -2.64
CPSF3Q9UKF6 MIR1245B-201ENST00000636115 69 ntBASIC-1.43□□□□□ -2.64
CPSF3Q9UKF6 Y_RNA.282-201ENST00000364793 102 ntBASIC-1.44□□□□□ -2.64
CPSF3Q9UKF6 SNORD19-201ENST00000391191 68 ntBASIC-1.44□□□□□ -2.64
CPSF3Q9UKF6 hsa-mir-4536-1.1-201ENST00000636519 88 ntBASIC-1.44□□□□□ -2.64
CPSF3Q9UKF6 MIR4320-201ENST00000636981 65 ntBASIC-1.44□□□□□ -2.64
CPSF3Q9UKF6 RNU6-294P-201ENST00000364999 102 ntBASIC-1.45□□□□□ -2.64
CPSF3Q9UKF6 RNU6-1157P-201ENST00000384456 106 ntBASIC-1.45□□□□□ -2.64
CPSF3Q9UKF6 MIR450A2-201ENST00000385022 100 ntBASIC-1.45□□□□□ -2.64
CPSF3Q9UKF6 MIR548V-201ENST00000584165 80 ntBASIC-1.45□□□□□ -2.64
CPSF3Q9UKF6 AL627230.5-201ENST00000619807 58 ntBASIC-1.45□□□□□ -2.64
CPSF3Q9UKF6 RNU6-668P-201ENST00000364180 107 ntBASIC-1.46□□□□□ -2.64
CPSF3Q9UKF6 MIR527-201ENST00000385244 85 ntBASIC-1.46□□□□□ -2.64
CPSF3Q9UKF6 AP002795.1-201ENST00000534879 84 ntBASIC-1.46□□□□□ -2.64
Retrieved 100 of 98,524 protein–RNA pairs in 183.8 ms