Protein–RNA interactions for Protein: Q9H4L4

SENP3, Sentrin-specific protease 3, humanhuman

Predicted RBP Predictions only

Length 574 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SENP3Q9H4L4 MIR499B-201ENST00000636498 73 ntBASIC2.58□□□□□ -2
SENP3Q9H4L4 MIR140-201ENST00000385282 100 ntBASIC2.57□□□□□ -2
SENP3Q9H4L4 RNU6-848P-201ENST00000515948 107 ntBASIC2.57□□□□□ -2
SENP3Q9H4L4 RNU6-617P-201ENST00000516147 107 ntBASIC2.57□□□□□ -2
SENP3Q9H4L4 RNU6-473P-201ENST00000516164 107 ntBASIC2.57□□□□□ -2
SENP3Q9H4L4 RNU6-1049P-201ENST00000516414 107 ntBASIC2.57□□□□□ -2
SENP3Q9H4L4 SMAD5-AS1_3.1-201ENST00000614187 124 ntBASIC2.56□□□□□ -2
SENP3Q9H4L4 MIR6854-201ENST00000614935 69 ntBASIC2.56□□□□□ -2
SENP3Q9H4L4 Y_RNA.260-201ENST00000364628 101 ntBASIC2.55□□□□□ -2
SENP3Q9H4L4 RNU6-900P-201ENST00000384498 102 ntBASIC2.55□□□□□ -2
SENP3Q9H4L4 SNORD71-201ENST00000411292 86 ntBASIC2.55□□□□□ -2
SENP3Q9H4L4 G3BP1-214ENST00000627077 114 ntTSL 5 BASIC2.55□□□□□ -2
SENP3Q9H4L4 RNU1-42P-201ENST00000364033 160 ntBASIC2.54□□□□□ -2
SENP3Q9H4L4 RNA5SP128-201ENST00000365305 116 ntBASIC2.54□□□□□ -2
SENP3Q9H4L4 KIF20B-201ENST00000260753 6306 ntAPPRIS P3 TSL 1 (best) BASIC2.54□□□□□ -2
SENP3Q9H4L4 FSD1L-201ENST00000374707 7062 ntTSL 1 (best) BASIC2.53□□□□□ -2
SENP3Q9H4L4 SNORA67.5-201ENST00000391036 107 ntBASIC2.53□□□□□ -2
SENP3Q9H4L4 AC087343.1-201ENST00000477341 475 ntBASIC2.53□□□□□ -2
SENP3Q9H4L4 RNU7-129P-201ENST00000516128 62 ntBASIC2.53□□□□□ -2
SENP3Q9H4L4 FSIP2-202ENST00000424728 20788 ntAPPRIS P2 TSL 5 BASIC2.53□□□□□ -2
SENP3Q9H4L4 MIR5694-201ENST00000581190 76 ntBASIC2.52□□□□□ -2.01
SENP3Q9H4L4 MIR96-201ENST00000362288 78 ntBASIC2.51□□□□□ -2.01
SENP3Q9H4L4 RNA5SP82-201ENST00000516707 92 ntBASIC2.51□□□□□ -2.01
SENP3Q9H4L4 MIR502-201ENST00000606349 86 ntBASIC2.51□□□□□ -2.01
SENP3Q9H4L4 GNAS-AS1_4.1-201ENST00000616546 112 ntBASIC2.51□□□□□ -2.01
SENP3Q9H4L4 RNA5SP224-201ENST00000365069 126 ntBASIC2.5□□□□□ -2.01
SENP3Q9H4L4 ATP13A3-201ENST00000256031 7322 ntAPPRIS P1 TSL 5 BASIC2.49□□□□□ -2.01
SENP3Q9H4L4 Y_RNA.223-201ENST00000364290 113 ntBASIC2.49□□□□□ -2.01
SENP3Q9H4L4 MIR581-201ENST00000384895 96 ntBASIC2.49□□□□□ -2.01
SENP3Q9H4L4 MBNL3-212ENST00000538204 11294 ntTSL 1 (best) BASIC2.48□□□□□ -2.01
SENP3Q9H4L4 MIR598-201ENST00000384868 97 ntBASIC2.48□□□□□ -2.01
SENP3Q9H4L4 RNU6-717P-201ENST00000459076 104 ntBASIC2.48□□□□□ -2.01
SENP3Q9H4L4 AL353765.1-201ENST00000605514 183 ntBASIC2.48□□□□□ -2.01
SENP3Q9H4L4 SNORA16.1-201ENST00000364597 132 ntBASIC2.47□□□□□ -2.01
SENP3Q9H4L4 RNA5SP338-201ENST00000410495 85 ntBASIC2.47□□□□□ -2.01
SENP3Q9H4L4 RPS29P1-201ENST00000465274 159 ntBASIC2.47□□□□□ -2.01
SENP3Q9H4L4 RNA5SP436-201ENST00000516020 115 ntBASIC2.47□□□□□ -2.01
SENP3Q9H4L4 AL353691.2-201ENST00000443795 59 ntBASIC2.45□□□□□ -2.02
SENP3Q9H4L4 AC108740.1-201ENST00000498629 225 ntBASIC2.45□□□□□ -2.02
SENP3Q9H4L4 MIR4419B-201ENST00000577260 68 ntBASIC2.45□□□□□ -2.02
SENP3Q9H4L4 AC013734.1-201ENST00000619329 111 ntBASIC2.45□□□□□ -2.02
SENP3Q9H4L4 SNORD114-27-201ENST00000363766 70 ntBASIC2.44□□□□□ -2.02
SENP3Q9H4L4 ST7-OT3_1.1-201ENST00000619607 74 ntBASIC2.44□□□□□ -2.02
SENP3Q9H4L4 RNA5SP404-201ENST00000517118 132 ntBASIC2.43□□□□□ -2.02
SENP3Q9H4L4 RNU6-455P-201ENST00000384681 107 ntBASIC2.42□□□□□ -2.02
SENP3Q9H4L4 MIR1323-201ENST00000408090 73 ntBASIC2.42□□□□□ -2.02
SENP3Q9H4L4 MIR1197-201ENST00000408818 88 ntBASIC2.42□□□□□ -2.02
SENP3Q9H4L4 MIR6840-201ENST00000611937 71 ntBASIC2.42□□□□□ -2.02
SENP3Q9H4L4 MIR520E-201ENST00000384867 87 ntBASIC2.4□□□□□ -2.03
SENP3Q9H4L4 SNORD53B-201ENST00000577887 78 ntBASIC2.4□□□□□ -2.03
SENP3Q9H4L4 OR2A41P-201ENST00000473586 105 ntBASIC2.39□□□□□ -2.03
SENP3Q9H4L4 MIR144-201ENST00000384886 86 ntBASIC2.38□□□□□ -2.03
SENP3Q9H4L4 Y_RNA.335-201ENST00000365299 96 ntBASIC2.35□□□□□ -2.03
SENP3Q9H4L4 U6.97-201ENST00000636904 101 ntBASIC2.35□□□□□ -2.03
SENP3Q9H4L4 SNORA26.4-201ENST00000391188 123 ntBASIC2.34□□□□□ -2.03
SENP3Q9H4L4 MIR4421-201ENST00000578133 69 ntBASIC2.34□□□□□ -2.03
SENP3Q9H4L4 SNORD45C-201ENST00000383893 79 ntBASIC2.32□□□□□ -2.04
SENP3Q9H4L4 RNU6-901P-201ENST00000384593 106 ntBASIC2.31□□□□□ -2.04
SENP3Q9H4L4 AC114755.3-201ENST00000481111 251 ntBASIC2.31□□□□□ -2.04
SENP3Q9H4L4 AP000553.5-201ENST00000641933 54 ntBASIC2.31□□□□□ -2.04
SENP3Q9H4L4 ABCA5-201ENST00000392676 8220 ntAPPRIS P1 TSL 1 (best) BASIC2.3□□□□□ -2.04
SENP3Q9H4L4 RPL35AP4-201ENST00000412007 102 ntBASIC2.3□□□□□ -2.04
SENP3Q9H4L4 MIR151B-201ENST00000584249 96 ntBASIC2.3□□□□□ -2.04
SENP3Q9H4L4 MIR379-201ENST00000362218 67 ntBASIC2.29□□□□□ -2.04
SENP3Q9H4L4 SNORA67.6-201ENST00000391093 99 ntBASIC2.29□□□□□ -2.04
SENP3Q9H4L4 AL353770.2-201ENST00000620024 78 ntBASIC2.29□□□□□ -2.04
SENP3Q9H4L4 TEX15-203ENST00000638951 11341 ntAPPRIS P1 TSL 5 BASIC2.28□□□□□ -2.04
SENP3Q9H4L4 SNORD26-201ENST00000384147 75 ntBASIC2.28□□□□□ -2.04
SENP3Q9H4L4 FTX_4.1-201ENST00000616291 147 ntBASIC2.28□□□□□ -2.04
SENP3Q9H4L4 MIR548AJ2-201ENST00000408539 92 ntBASIC2.25□□□□□ -2.05
SENP3Q9H4L4 MIR548J-201ENST00000408833 112 ntBASIC2.25□□□□□ -2.05
SENP3Q9H4L4 RNU6-1169P-201ENST00000363537 103 ntBASIC2.24□□□□□ -2.05
SENP3Q9H4L4 uc_338.17-201ENST00000619633 179 ntBASIC2.24□□□□□ -2.05
SENP3Q9H4L4 RNA5SP61-201ENST00000516453 100 ntBASIC2.23□□□□□ -2.05
SENP3Q9H4L4 MIR6078-201ENST00000611069 100 ntBASIC2.23□□□□□ -2.05
SENP3Q9H4L4 SNORD115-33-201ENST00000363723 82 ntBASIC2.22□□□□□ -2.05
SENP3Q9H4L4 RNU1-93P-201ENST00000364704 169 ntBASIC2.22□□□□□ -2.05
SENP3Q9H4L4 SNORD56B-201ENST00000384713 71 ntBASIC2.21□□□□□ -2.06
SENP3Q9H4L4 MIR4448-201ENST00000584360 86 ntBASIC2.21□□□□□ -2.06
SENP3Q9H4L4 Y_RNA.603-201ENST00000410571 108 ntBASIC2.2□□□□□ -2.06
SENP3Q9H4L4 SNORD48-201ENST00000364953 64 ntBASIC2.19□□□□□ -2.06
SENP3Q9H4L4 MIR6788-201ENST00000618842 66 ntBASIC2.19□□□□□ -2.06
SENP3Q9H4L4 MIR6514-201ENST00000622549 70 ntBASIC2.19□□□□□ -2.06
SENP3Q9H4L4 ZBTB41-201ENST00000367405 8478 ntAPPRIS P1 TSL 1 (best) BASIC2.19□□□□□ -2.06
SENP3Q9H4L4 SNORD18.2-201ENST00000459604 70 ntBASIC2.18□□□□□ -2.06
SENP3Q9H4L4 RNA5SP364-201ENST00000516938 78 ntBASIC2.18□□□□□ -2.06
SENP3Q9H4L4 IL6ST-203ENST00000381287 8667 ntTSL 5 BASIC2.17□□□□□ -2.06
SENP3Q9H4L4 MIR26B-201ENST00000362251 77 ntBASIC2.17□□□□□ -2.06
SENP3Q9H4L4 RNU6ATAC20P-201ENST00000408436 127 ntBASIC2.17□□□□□ -2.06
SENP3Q9H4L4 MIR4255-201ENST00000579351 72 ntBASIC2.17□□□□□ -2.06
SENP3Q9H4L4 MIR5087-201ENST00000635826 76 ntBASIC2.17□□□□□ -2.06
SENP3Q9H4L4 RNU6-929P-201ENST00000384429 107 ntBASIC2.16□□□□□ -2.06
SENP3Q9H4L4 RNU6-695P-201ENST00000391157 104 ntBASIC2.15□□□□□ -2.07
SENP3Q9H4L4 MIR1304-201ENST00000408243 91 ntBASIC2.14□□□□□ -2.07
SENP3Q9H4L4 RN7SL793P-201ENST00000583259 296 ntBASIC2.14□□□□□ -2.07
SENP3Q9H4L4 AL590095.2-201ENST00000604136 117 ntBASIC2.14□□□□□ -2.07
SENP3Q9H4L4 MIR23C-201ENST00000579846 100 ntBASIC2.12□□□□□ -2.07
SENP3Q9H4L4 Y_RNA.68-201ENST00000362881 102 ntBASIC2.11□□□□□ -2.07
SENP3Q9H4L4 RNA5SP363-201ENST00000365072 115 ntBASIC2.11□□□□□ -2.07
SENP3Q9H4L4 SNORA31.24-201ENST00000517232 57 ntBASIC2.11□□□□□ -2.07
Retrieved 100 of 98,524 protein–RNA pairs in 259 ms