Protein–RNA interactions for Protein: Q96DZ5

CLIP3, CAP-Gly domain-containing linker protein 3, humanhuman

Predictions only

Length 547 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3Q96DZ5 U6.58-201ENST00000613107 107 ntBASIC0.35□□□□□ -2.35
CLIP3Q96DZ5 RNU6-180P-201ENST00000516697 61 ntBASIC0.34□□□□□ -2.36
CLIP3Q96DZ5 RNU6-1184P-201ENST00000384588 108 ntBASIC0.33□□□□□ -2.36
CLIP3Q96DZ5 Y_RNA.722-201ENST00000517279 114 ntBASIC0.33□□□□□ -2.36
CLIP3Q96DZ5 CR383656.4-201ENST00000546909 122 ntBASIC0.33□□□□□ -2.36
CLIP3Q96DZ5 MIR4432-201ENST00000581823 84 ntBASIC0.33□□□□□ -2.36
CLIP3Q96DZ5 MIR6507-201ENST00000613630 70 ntBASIC0.33□□□□□ -2.36
CLIP3Q96DZ5 MIR6514-201ENST00000622549 70 ntBASIC0.33□□□□□ -2.36
CLIP3Q96DZ5 MIR924-201ENST00000638017 53 ntBASIC0.33□□□□□ -2.36
CLIP3Q96DZ5 RNU6-936P-201ENST00000384005 107 ntBASIC0.32□□□□□ -2.36
CLIP3Q96DZ5 MIR7110-201ENST00000612638 86 ntBASIC0.32□□□□□ -2.36
CLIP3Q96DZ5 RNA5SP325-201ENST00000363756 130 ntBASIC0.31□□□□□ -2.36
CLIP3Q96DZ5 SNORD116.2-201ENST00000391251 93 ntBASIC0.31□□□□□ -2.36
CLIP3Q96DZ5 RNU6-172P-201ENST00000411000 93 ntBASIC0.31□□□□□ -2.36
CLIP3Q96DZ5 MIR6888-201ENST00000621977 67 ntBASIC0.31□□□□□ -2.36
CLIP3Q96DZ5 AL391099.1-201ENST00000624635 187 ntBASIC0.31□□□□□ -2.36
CLIP3Q96DZ5 RNU6-598P-201ENST00000364017 105 ntBASIC0.3□□□□□ -2.36
CLIP3Q96DZ5 RNU6-973P-201ENST00000364690 107 ntBASIC0.3□□□□□ -2.36
CLIP3Q96DZ5 RNU6-900P-201ENST00000384498 102 ntBASIC0.3□□□□□ -2.36
CLIP3Q96DZ5 RNA5SP163-201ENST00000410304 99 ntBASIC0.3□□□□□ -2.36
CLIP3Q96DZ5 RNU6ATAC22P-201ENST00000516794 89 ntBASIC0.3□□□□□ -2.36
CLIP3Q96DZ5 AC108676.2-201ENST00000605225 163 ntBASIC0.3□□□□□ -2.36
CLIP3Q96DZ5 MIR148A-201ENST00000362215 68 ntBASIC0.29□□□□□ -2.36
CLIP3Q96DZ5 TRGJP-201ENST00000390338 61 ntAPPRIS P1 BASIC0.29□□□□□ -2.36
CLIP3Q96DZ5 AC096531.1-201ENST00000419107 107 ntBASIC0.29□□□□□ -2.36
CLIP3Q96DZ5 AL445584.3-201ENST00000617173 78 ntBASIC0.29□□□□□ -2.36
CLIP3Q96DZ5 uc_338.36-201ENST00000622331 158 ntBASIC0.29□□□□□ -2.36
CLIP3Q96DZ5 MIR4315-1-201ENST00000636800 73 ntBASIC0.29□□□□□ -2.36
CLIP3Q96DZ5 MIR4315-2-201ENST00000640925 73 ntBASIC0.29□□□□□ -2.36
CLIP3Q96DZ5 MIR429-201ENST00000362106 83 ntBASIC0.28□□□□□ -2.36
CLIP3Q96DZ5 RNU6-810P-201ENST00000364001 107 ntBASIC0.28□□□□□ -2.36
CLIP3Q96DZ5 SNORA40B-201ENST00000385573 128 ntBASIC0.28□□□□□ -2.36
CLIP3Q96DZ5 RNU6-808P-201ENST00000391233 108 ntBASIC0.28□□□□□ -2.36
CLIP3Q96DZ5 RNU6-980P-201ENST00000516925 103 ntBASIC0.28□□□□□ -2.36
CLIP3Q96DZ5 MIR4514-201ENST00000581410 57 ntBASIC0.28□□□□□ -2.36
CLIP3Q96DZ5 MIR8087-201ENST00000612745 78 ntBASIC0.28□□□□□ -2.36
CLIP3Q96DZ5 U2.18-201ENST00000622185 84 ntBASIC0.28□□□□□ -2.36
CLIP3Q96DZ5 MIR330-201ENST00000362196 94 ntBASIC0.27□□□□□ -2.37
CLIP3Q96DZ5 RNU6-455P-201ENST00000384681 107 ntBASIC0.27□□□□□ -2.37
CLIP3Q96DZ5 SNORA62.5-201ENST00000516634 120 ntBASIC0.27□□□□□ -2.37
CLIP3Q96DZ5 snoR1.1-201ENST00000628177 80 ntBASIC0.27□□□□□ -2.37
CLIP3Q96DZ5 SNORA42.1-201ENST00000363515 137 ntBASIC0.26□□□□□ -2.37
CLIP3Q96DZ5 RNU7-165P-201ENST00000458864 60 ntBASIC0.26□□□□□ -2.37
CLIP3Q96DZ5 RNA5SP330-201ENST00000517096 96 ntBASIC0.26□□□□□ -2.37
CLIP3Q96DZ5 MIR4490-201ENST00000582647 84 ntBASIC0.26□□□□□ -2.37
CLIP3Q96DZ5 MIR5093-201ENST00000583199 100 ntBASIC0.26□□□□□ -2.37
CLIP3Q96DZ5 MIR4743-201ENST00000584576 69 ntBASIC0.26□□□□□ -2.37
CLIP3Q96DZ5 AC104408.1-201ENST00000605241 170 ntBASIC0.26□□□□□ -2.37
CLIP3Q96DZ5 SPRY4-IT1_2.1-201ENST00000612613 121 ntBASIC0.26□□□□□ -2.37
CLIP3Q96DZ5 MIR655-201ENST00000362159 97 ntBASIC0.25□□□□□ -2.37
CLIP3Q96DZ5 MIR593-201ENST00000384856 100 ntBASIC0.25□□□□□ -2.37
CLIP3Q96DZ5 MIR892B-201ENST00000401279 77 ntBASIC0.25□□□□□ -2.37
CLIP3Q96DZ5 AC244250.2-201ENST00000418731 148 ntBASIC0.25□□□□□ -2.37
CLIP3Q96DZ5 KIF20B-201ENST00000260753 6306 ntAPPRIS P3 TSL 1 (best) BASIC0.24□□□□□ -2.37
CLIP3Q96DZ5 SNORA62.4-201ENST00000365504 151 ntBASIC0.24□□□□□ -2.37
CLIP3Q96DZ5 MIR145-201ENST00000384967 88 ntBASIC0.24□□□□□ -2.37
CLIP3Q96DZ5 RNU6-1133P-201ENST00000410963 100 ntBASIC0.24□□□□□ -2.37
CLIP3Q96DZ5 RNU6-1262P-201ENST00000516217 96 ntBASIC0.24□□□□□ -2.37
CLIP3Q96DZ5 MIR5704-201ENST00000584029 77 ntBASIC0.24□□□□□ -2.37
CLIP3Q96DZ5 MIR8068-201ENST00000618032 68 ntBASIC0.24□□□□□ -2.37
CLIP3Q96DZ5 SNORD56B-201ENST00000384713 71 ntBASIC0.23□□□□□ -2.37
CLIP3Q96DZ5 MIR610-201ENST00000385139 96 ntBASIC0.23□□□□□ -2.37
CLIP3Q96DZ5 MIR1197-201ENST00000408818 88 ntBASIC0.23□□□□□ -2.37
CLIP3Q96DZ5 U7.5-201ENST00000517224 61 ntBASIC0.23□□□□□ -2.37
CLIP3Q96DZ5 Y_RNA.115-201ENST00000363272 98 ntBASIC0.22□□□□□ -2.37
CLIP3Q96DZ5 RNA5SP214-201ENST00000363378 118 ntBASIC0.22□□□□□ -2.37
CLIP3Q96DZ5 RNU6-696P-201ENST00000390834 107 ntBASIC0.22□□□□□ -2.37
CLIP3Q96DZ5 RNU7-151P-201ENST00000516930 53 ntBASIC0.22□□□□□ -2.37
CLIP3Q96DZ5 HOTAIR_3.1-201ENST00000611352 97 ntBASIC0.22□□□□□ -2.37
CLIP3Q96DZ5 SNORD114-9-201ENST00000364370 72 ntBASIC0.21□□□□□ -2.38
CLIP3Q96DZ5 MIR548X-201ENST00000580069 75 ntBASIC0.21□□□□□ -2.38
CLIP3Q96DZ5 MIR579-201ENST00000385221 98 ntBASIC0.2□□□□□ -2.38
CLIP3Q96DZ5 AC114755.3-201ENST00000481111 251 ntBASIC0.2□□□□□ -2.38
CLIP3Q96DZ5 AC023932.2-201ENST00000603176 175 ntBASIC0.2□□□□□ -2.38
CLIP3Q96DZ5 RNA5SP457-201ENST00000363657 124 ntBASIC0.19□□□□□ -2.38
CLIP3Q96DZ5 SNORD57-201ENST00000448188 72 ntBASIC0.19□□□□□ -2.38
CLIP3Q96DZ5 RNU7-88P-201ENST00000458752 63 ntBASIC0.19□□□□□ -2.38
CLIP3Q96DZ5 RNU7-159P-201ENST00000459284 62 ntBASIC0.19□□□□□ -2.38
CLIP3Q96DZ5 RNU6-1174P-201ENST00000517278 101 ntBASIC0.19□□□□□ -2.38
CLIP3Q96DZ5 RNU4-33P-201ENST00000364316 85 ntBASIC0.18□□□□□ -2.38
CLIP3Q96DZ5 Y_RNA.379-201ENST00000365653 102 ntBASIC0.18□□□□□ -2.38
CLIP3Q96DZ5 MIR125B1-201ENST00000385236 88 ntBASIC0.18□□□□□ -2.38
CLIP3Q96DZ5 RNU7-160P-201ENST00000516660 62 ntBASIC0.18□□□□□ -2.38
CLIP3Q96DZ5 MIR6854-201ENST00000614935 69 ntBASIC0.18□□□□□ -2.38
CLIP3Q96DZ5 G3BP1-214ENST00000627077 114 ntTSL 5 BASIC0.18□□□□□ -2.38
CLIP3Q96DZ5 Y_RNA.69-201ENST00000362885 109 ntBASIC0.17□□□□□ -2.38
CLIP3Q96DZ5 SNORD114-5-201ENST00000362928 70 ntBASIC0.17□□□□□ -2.38
CLIP3Q96DZ5 RNU6-753P-201ENST00000363926 107 ntBASIC0.17□□□□□ -2.38
CLIP3Q96DZ5 MIR548AA1-201ENST00000384971 97 ntBASIC0.17□□□□□ -2.38
CLIP3Q96DZ5 MIR1295A-201ENST00000408463 79 ntBASIC0.17□□□□□ -2.38
CLIP3Q96DZ5 RNU4-88P-201ENST00000411220 86 ntBASIC0.17□□□□□ -2.38
CLIP3Q96DZ5 MIR4280-201ENST00000582178 76 ntBASIC0.17□□□□□ -2.38
CLIP3Q96DZ5 RNU6ATAC4P-201ENST00000387446 126 ntBASIC0.16□□□□□ -2.38
CLIP3Q96DZ5 Y_RNA.613-201ENST00000410726 97 ntBASIC0.16□□□□□ -2.38
CLIP3Q96DZ5 RNU6-1267P-201ENST00000410747 107 ntBASIC0.16□□□□□ -2.38
CLIP3Q96DZ5 RNU6-419P-201ENST00000517030 63 ntBASIC0.16□□□□□ -2.38
CLIP3Q96DZ5 LINC01984-201ENST00000583863 301 ntTSL 3 BASIC0.16□□□□□ -2.38
CLIP3Q96DZ5 RNU6-924P-201ENST00000362926 108 ntBASIC0.14□□□□□ -2.39
CLIP3Q96DZ5 RNU6-929P-201ENST00000384429 107 ntBASIC0.14□□□□□ -2.39
CLIP3Q96DZ5 RNU6-35P-201ENST00000384530 107 ntBASIC0.14□□□□□ -2.39
Retrieved 100 of 98,524 protein–RNA pairs in 197.2 ms