Protein–RNA interactions for Protein: Q70EL1

USP54, Inactive ubiquitin carboxyl-terminal hydrolase 54, humanhuman

Predictions only

Length 1,684 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP54Q70EL1 SNORD116-10-201ENST00000363791 102 ntBASIC-3□□□□□ -2.89
USP54Q70EL1 MIR630-201ENST00000384957 97 ntBASIC-3□□□□□ -2.89
USP54Q70EL1 RNU7-153P-201ENST00000516455 62 ntBASIC-3□□□□□ -2.89
USP54Q70EL1 MTND4P29-201ENST00000503122 1372 ntBASIC-3□□□□□ -2.89
USP54Q70EL1 MT-TD-201ENST00000387419 68 ntBASIC-3.01□□□□□ -2.89
USP54Q70EL1 SCARNA23-201ENST00000516060 130 ntBASIC-3.01□□□□□ -2.89
USP54Q70EL1 AC072026.1-201ENST00000605023 201 ntBASIC-3.01□□□□□ -2.89
USP54Q70EL1 AC141273.2-201ENST00000618989 130 ntBASIC-3.01□□□□□ -2.89
USP54Q70EL1 RNU6-694P-201ENST00000364071 147 ntBASIC-3.01□□□□□ -2.89
USP54Q70EL1 Y_RNA.609-201ENST00000410669 89 ntBASIC-3.01□□□□□ -2.89
USP54Q70EL1 RNU4-40P-201ENST00000364351 143 ntBASIC-3.02□□□□□ -2.89
USP54Q70EL1 SNORD60-201ENST00000383903 83 ntBASIC-3.02□□□□□ -2.89
USP54Q70EL1 SNORD18C-201ENST00000362704 69 ntBASIC-3.03□□□□□ -2.89
USP54Q70EL1 RNU7-151P-201ENST00000516930 53 ntBASIC-3.03□□□□□ -2.89
USP54Q70EL1 Y_RNA.519-201ENST00000384553 102 ntBASIC-3.04□□□□□ -2.9
USP54Q70EL1 Y_RNA.662-201ENST00000516028 97 ntBASIC-3.04□□□□□ -2.9
USP54Q70EL1 MIR5693-201ENST00000577722 73 ntBASIC-3.04□□□□□ -2.9
USP54Q70EL1 AL035470.1-201ENST00000622571 220 ntBASIC-3.04□□□□□ -2.9
USP54Q70EL1 Y_RNA.420-201ENST00000384043 110 ntBASIC-3.05□□□□□ -2.9
USP54Q70EL1 RNU6-987P-201ENST00000384759 104 ntBASIC-3.05□□□□□ -2.9
USP54Q70EL1 RNU6-129P-201ENST00000391022 107 ntBASIC-3.05□□□□□ -2.9
USP54Q70EL1 RNU6-141P-201ENST00000410499 105 ntBASIC-3.05□□□□□ -2.9
USP54Q70EL1 AC097484.2-201ENST00000509147 251 ntBASIC-3.05□□□□□ -2.9
USP54Q70EL1 Y_RNA.478-201ENST00000384358 107 ntBASIC-3.06□□□□□ -2.9
USP54Q70EL1 RNU6-995P-201ENST00000391244 107 ntBASIC-3.06□□□□□ -2.9
USP54Q70EL1 RNU6-624P-201ENST00000363411 107 ntBASIC-3.07□□□□□ -2.9
USP54Q70EL1 Y_RNA.511-201ENST00000384514 103 ntBASIC-3.07□□□□□ -2.9
USP54Q70EL1 MIR519C-201ENST00000385053 87 ntBASIC-3.07□□□□□ -2.9
USP54Q70EL1 TRAJ61-201ENST00000390479 60 ntAPPRIS P1 BASIC-3.07□□□□□ -2.9
USP54Q70EL1 Y_RNA.216-201ENST00000364205 93 ntBASIC-3.08□□□□□ -2.9
USP54Q70EL1 Y_RNA.240-201ENST00000364469 95 ntBASIC-3.08□□□□□ -2.9
USP54Q70EL1 Y_RNA.574-201ENST00000384766 95 ntBASIC-3.08□□□□□ -2.9
USP54Q70EL1 Y_RNA.647-201ENST00000459194 112 ntBASIC-3.08□□□□□ -2.9
USP54Q70EL1 Y_RNA.640-201ENST00000459296 112 ntBASIC-3.08□□□□□ -2.9
USP54Q70EL1 Y_RNA.803-201ENST00000614432 112 ntBASIC-3.08□□□□□ -2.9
USP54Q70EL1 Y_RNA.815-201ENST00000616655 112 ntBASIC-3.08□□□□□ -2.9
USP54Q70EL1 Y_RNA.795-201ENST00000619475 112 ntBASIC-3.08□□□□□ -2.9
USP54Q70EL1 Y_RNA.830-201ENST00000628531 96 ntBASIC-3.08□□□□□ -2.9
USP54Q70EL1 Y_RNA.827-201ENST00000638104 112 ntBASIC-3.08□□□□□ -2.9
USP54Q70EL1 Y_RNA.350-201ENST00000365409 98 ntBASIC-3.08□□□□□ -2.9
USP54Q70EL1 RNU6-669P-201ENST00000365575 107 ntBASIC-3.08□□□□□ -2.9
USP54Q70EL1 SNORD116-16-201ENST00000384533 92 ntBASIC-3.08□□□□□ -2.9
USP54Q70EL1 RNU6-1081P-201ENST00000384537 107 ntBASIC-3.08□□□□□ -2.9
USP54Q70EL1 AC020661.2-201ENST00000560114 134 ntBASIC-3.09□□□□□ -2.9
USP54Q70EL1 MIR548X2-201ENST00000579776 100 ntBASIC-3.09□□□□□ -2.9
USP54Q70EL1 Y_RNA.59-201ENST00000362828 102 ntBASIC-3.11□□□□□ -2.91
USP54Q70EL1 SNORD45.1-201ENST00000363181 77 ntBASIC-3.11□□□□□ -2.91
USP54Q70EL1 Y_RNA.580-201ENST00000391004 95 ntBASIC-3.11□□□□□ -2.91
USP54Q70EL1 SNORD115-37-201ENST00000363768 82 ntBASIC-3.11□□□□□ -2.91
USP54Q70EL1 MIR3128-201ENST00000581957 66 ntBASIC-3.11□□□□□ -2.91
USP54Q70EL1 AL157777.2-201ENST00000258070 137 ntBASIC-3.12□□□□□ -2.91
USP54Q70EL1 MIRLET7A2-201ENST00000362105 72 ntBASIC-3.12□□□□□ -2.91
USP54Q70EL1 Y_RNA.11-201ENST00000362375 109 ntBASIC-3.12□□□□□ -2.91
USP54Q70EL1 Y_RNA.47-201ENST00000362697 108 ntBASIC-3.12□□□□□ -2.91
USP54Q70EL1 Y_RNA.138-201ENST00000363462 102 ntBASIC-3.12□□□□□ -2.91
USP54Q70EL1 MTND4LP1-201ENST00000446263 157 ntBASIC-3.12□□□□□ -2.91
USP54Q70EL1 RNU6-982P-201ENST00000516216 102 ntBASIC-3.12□□□□□ -2.91
USP54Q70EL1 SNORA20.1-201ENST00000364790 130 ntBASIC-3.13□□□□□ -2.91
USP54Q70EL1 RNY4P10-201ENST00000365571 96 ntBASIC-3.14□□□□□ -2.91
USP54Q70EL1 Y_RNA.586-201ENST00000391146 98 ntBASIC-3.14□□□□□ -2.91
USP54Q70EL1 RNU6-182P-201ENST00000516970 105 ntBASIC-3.14□□□□□ -2.91
USP54Q70EL1 RNU6-1108P-201ENST00000516308 104 ntBASIC-3.15□□□□□ -2.91
USP54Q70EL1 Y_RNA.321-201ENST00000365149 102 ntBASIC-3.16□□□□□ -2.92
USP54Q70EL1 Y_RNA.460-201ENST00000384255 102 ntBASIC-3.16□□□□□ -2.92
USP54Q70EL1 RNY4P25-201ENST00000459254 96 ntBASIC-3.16□□□□□ -2.92
USP54Q70EL1 RNU6-111P-201ENST00000517179 105 ntBASIC-3.16□□□□□ -2.92
USP54Q70EL1 SPRY4-IT1_2.1-201ENST00000612613 121 ntBASIC-3.16□□□□□ -2.92
USP54Q70EL1 RNU7-61P-201ENST00000515897 61 ntBASIC-3.17□□□□□ -2.92
USP54Q70EL1 Y_RNA.134-201ENST00000363435 105 ntBASIC-3.17□□□□□ -2.92
USP54Q70EL1 SNORD63.2-201ENST00000516303 64 ntBASIC-3.17□□□□□ -2.92
USP54Q70EL1 RNY1P1-201ENST00000364372 112 ntBASIC-3.19□□□□□ -2.92
USP54Q70EL1 Y_RNA.619-201ENST00000410951 90 ntBASIC-3.19□□□□□ -2.92
USP54Q70EL1 Y_RNA.649-201ENST00000459077 103 ntBASIC-3.19□□□□□ -2.92
USP54Q70EL1 Y_RNA.79-201ENST00000362992 113 ntBASIC-3.2□□□□□ -2.92
USP54Q70EL1 Y_RNA.422-201ENST00000384054 114 ntBASIC-3.2□□□□□ -2.92
USP54Q70EL1 MTATP8P1-201ENST00000467115 207 ntBASIC-3.2□□□□□ -2.92
USP54Q70EL1 RNU6-1023P-201ENST00000516137 106 ntBASIC-3.2□□□□□ -2.92
USP54Q70EL1 RNU6-303P-201ENST00000517091 106 ntBASIC-3.2□□□□□ -2.92
USP54Q70EL1 MIR509-1-201ENST00000385265 94 ntBASIC-3.2□□□□□ -2.92
USP54Q70EL1 MIR509-2-201ENST00000390724 91 ntBASIC-3.2□□□□□ -2.92
USP54Q70EL1 RNU6-772P-201ENST00000516042 105 ntBASIC-3.2□□□□□ -2.92
USP54Q70EL1 MIR8053-201ENST00000613344 75 ntBASIC-3.2□□□□□ -2.92
USP54Q70EL1 MIR7978-201ENST00000636158 59 ntBASIC-3.2□□□□□ -2.92
USP54Q70EL1 RNU6-574P-201ENST00000384265 107 ntBASIC-3.21□□□□□ -2.92
USP54Q70EL1 RNU6-394P-201ENST00000410735 107 ntBASIC-3.21□□□□□ -2.92
USP54Q70EL1 RNY3P8-201ENST00000411366 126 ntBASIC-3.21□□□□□ -2.92
USP54Q70EL1 RNU6-523P-201ENST00000516304 54 ntBASIC-3.21□□□□□ -2.92
USP54Q70EL1 Y_RNA.680-201ENST00000516441 93 ntBASIC-3.21□□□□□ -2.92
USP54Q70EL1 Y_RNA.291-201ENST00000364886 113 ntBASIC-3.22□□□□□ -2.92
USP54Q70EL1 SNORA8.1-201ENST00000384250 140 ntBASIC-3.22□□□□□ -2.92
USP54Q70EL1 RNU6-1044P-201ENST00000384755 107 ntBASIC-3.22□□□□□ -2.92
USP54Q70EL1 Y_RNA.702-201ENST00000516843 96 ntBASIC-3.22□□□□□ -2.92
USP54Q70EL1 Y_RNA.281-201ENST00000364774 94 ntBASIC-3.23□□□□□ -2.93
USP54Q70EL1 RNA5SP106-201ENST00000517274 100 ntBASIC-3.23□□□□□ -2.93
USP54Q70EL1 AC062037.2-201ENST00000610137 73 ntBASIC-3.23□□□□□ -2.93
USP54Q70EL1 MIR1297-201ENST00000637311 77 ntBASIC-3.23□□□□□ -2.93
USP54Q70EL1 RNU6-668P-201ENST00000364180 107 ntBASIC-3.24□□□□□ -2.93
USP54Q70EL1 Y_RNA.349-201ENST00000365406 102 ntBASIC-3.24□□□□□ -2.93
USP54Q70EL1 SNORA41B-201ENST00000384785 128 ntBASIC-3.24□□□□□ -2.93
USP54Q70EL1 MIR379-201ENST00000362218 67 ntBASIC-3.24□□□□□ -2.93
Retrieved 100 of 98,524 protein–RNA pairs in 193.2 ms