Protein–RNA interactions for Protein: P31277

HOXD11, Homeobox protein Hox-D11, humanhuman

Predicted RBP Predictions only

Length 338 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD11P31277 RNU4-54P-201ENST00000516428 129 ntBASIC1.94□□□□□ -2.1
HOXD11P31277 SCARNA11.2-201ENST00000517183 154 ntBASIC1.94□□□□□ -2.1
HOXD11P31277 JMJD1C-212ENST00000639129 7901 ntAPPRIS ALT2 TSL 5 BASIC1.94□□□□□ -2.1
HOXD11P31277 TEX15-203ENST00000638951 11341 ntAPPRIS P1 TSL 5 BASIC1.93□□□□□ -2.1
HOXD11P31277 MIR8081-201ENST00000611533 95 ntBASIC1.93□□□□□ -2.1
HOXD11P31277 C16orf97-206ENST00000622950 415 ntTSL 2 BASIC1.93□□□□□ -2.1
HOXD11P31277 RNA5SP128-201ENST00000365305 116 ntBASIC1.92□□□□□ -2.1
HOXD11P31277 RPS29P1-201ENST00000465274 159 ntBASIC1.92□□□□□ -2.1
HOXD11P31277 MIR6755-201ENST00000619993 66 ntBASIC1.92□□□□□ -2.1
HOXD11P31277 RNU1-42P-201ENST00000364033 160 ntBASIC1.91□□□□□ -2.1
HOXD11P31277 MIR520E-201ENST00000384867 87 ntBASIC1.91□□□□□ -2.1
HOXD11P31277 MIR518A1-201ENST00000385068 85 ntBASIC1.91□□□□□ -2.1
HOXD11P31277 RNU7-55P-201ENST00000459426 62 ntBASIC1.91□□□□□ -2.1
HOXD11P31277 RNU7-129P-201ENST00000516128 62 ntBASIC1.91□□□□□ -2.1
HOXD11P31277 MIR5002-201ENST00000584713 97 ntBASIC1.91□□□□□ -2.1
HOXD11P31277 RNU6-1233P-201ENST00000362922 102 ntBASIC1.9□□□□□ -2.11
HOXD11P31277 SNORD26-201ENST00000384147 75 ntBASIC1.9□□□□□ -2.11
HOXD11P31277 SNORD19-201ENST00000391191 68 ntBASIC1.9□□□□□ -2.11
HOXD11P31277 RNY3P8-201ENST00000411366 126 ntBASIC1.9□□□□□ -2.11
HOXD11P31277 MIR499B-201ENST00000636498 73 ntBASIC1.9□□□□□ -2.11
HOXD11P31277 MIR6086-201ENST00000638065 55 ntBASIC1.89□□□□□ -2.11
HOXD11P31277 FSIP2-202ENST00000424728 20788 ntAPPRIS P2 TSL 5 BASIC1.88□□□□□ -2.11
HOXD11P31277 RNA5SP62-201ENST00000363457 110 ntBASIC1.88□□□□□ -2.11
HOXD11P31277 MIR9-3-201ENST00000385084 90 ntBASIC1.88□□□□□ -2.11
HOXD11P31277 MIR548J-201ENST00000408833 112 ntBASIC1.88□□□□□ -2.11
HOXD11P31277 RNA5SP436-201ENST00000516020 115 ntBASIC1.88□□□□□ -2.11
HOXD11P31277 MIR3122-201ENST00000577243 73 ntBASIC1.88□□□□□ -2.11
HOXD11P31277 Y_RNA.115-201ENST00000363272 98 ntBASIC1.87□□□□□ -2.11
HOXD11P31277 MIR216A-201ENST00000385063 110 ntBASIC1.87□□□□□ -2.11
HOXD11P31277 MIR124-2-201ENST00000385081 109 ntBASIC1.87□□□□□ -2.11
HOXD11P31277 AC096531.1-201ENST00000419107 107 ntBASIC1.87□□□□□ -2.11
HOXD11P31277 RNA5SP160-201ENST00000364866 120 ntBASIC1.86□□□□□ -2.11
HOXD11P31277 RNA5SP121-201ENST00000516537 101 ntBASIC1.86□□□□□ -2.11
HOXD11P31277 MIR502-201ENST00000606349 86 ntBASIC1.86□□□□□ -2.11
HOXD11P31277 RNA5SP257-201ENST00000363023 116 ntBASIC1.85□□□□□ -2.11
HOXD11P31277 GNAS-AS1_4.1-201ENST00000616546 112 ntBASIC1.85□□□□□ -2.11
HOXD11P31277 SNORD60-201ENST00000383903 83 ntBASIC1.84□□□□□ -2.11
HOXD11P31277 MIR26B-201ENST00000362251 77 ntBASIC1.83□□□□□ -2.12
HOXD11P31277 SNORD115.2-201ENST00000391126 59 ntBASIC1.83□□□□□ -2.12
HOXD11P31277 RNU6-900P-201ENST00000384498 102 ntBASIC1.82□□□□□ -2.12
HOXD11P31277 MIR1273G-201ENST00000577677 100 ntBASIC1.82□□□□□ -2.12
HOXD11P31277 MIR193B-201ENST00000384907 83 ntBASIC1.81□□□□□ -2.12
HOXD11P31277 TRAJ49-201ENST00000390488 56 ntAPPRIS P1 BASIC1.81□□□□□ -2.12
HOXD11P31277 CPEB3_ribozyme.1-201ENST00000408115 78 ntBASIC1.81□□□□□ -2.12
HOXD11P31277 AC108740.1-201ENST00000498629 225 ntBASIC1.81□□□□□ -2.12
HOXD11P31277 MIR4421-201ENST00000578133 69 ntBASIC1.81□□□□□ -2.12
HOXD11P31277 RPS29P23-201ENST00000458635 123 ntBASIC1.79□□□□□ -2.12
HOXD11P31277 MIR5704-201ENST00000584029 77 ntBASIC1.79□□□□□ -2.12
HOXD11P31277 MBNL3-212ENST00000538204 11294 ntTSL 1 (best) BASIC1.78□□□□□ -2.12
HOXD11P31277 MIR6854-201ENST00000614935 69 ntBASIC1.78□□□□□ -2.12
HOXD11P31277 AL353770.2-201ENST00000620024 78 ntBASIC1.77□□□□□ -2.13
HOXD11P31277 SNORD53B-201ENST00000577887 78 ntBASIC1.76□□□□□ -2.13
HOXD11P31277 SAMD9-203ENST00000620985 6754 ntAPPRIS P1 TSL 2 BASIC1.76□□□□□ -2.13
HOXD11P31277 SNORA42.1-201ENST00000363515 137 ntBASIC1.75□□□□□ -2.13
HOXD11P31277 VTRNA1-3-201ENST00000365645 89 ntBASIC1.74□□□□□ -2.13
HOXD11P31277 MIR6078-201ENST00000611069 100 ntBASIC1.74□□□□□ -2.13
HOXD11P31277 MIR8068-201ENST00000618032 68 ntBASIC1.74□□□□□ -2.13
HOXD11P31277 RNU6-1091P-201ENST00000363945 107 ntBASIC1.73□□□□□ -2.13
HOXD11P31277 AL590095.2-201ENST00000604136 117 ntBASIC1.73□□□□□ -2.13
HOXD11P31277 Y_RNA.134-201ENST00000363435 105 ntBASIC1.72□□□□□ -2.13
HOXD11P31277 RNA5SP363-201ENST00000365072 115 ntBASIC1.72□□□□□ -2.13
HOXD11P31277 Y_RNA.382-201ENST00000365672 114 ntBASIC1.72□□□□□ -2.13
HOXD11P31277 hsa-mir-3130-1.1-201ENST00000579223 75 ntBASIC1.72□□□□□ -2.13
HOXD11P31277 IL6ST-203ENST00000381287 8667 ntTSL 5 BASIC1.71□□□□□ -2.14
HOXD11P31277 RNU6-455P-201ENST00000384681 107 ntBASIC1.71□□□□□ -2.14
HOXD11P31277 RNU6-997P-201ENST00000384725 107 ntBASIC1.71□□□□□ -2.14
HOXD11P31277 ZBTB41-201ENST00000367405 8478 ntAPPRIS P1 TSL 1 (best) BASIC1.7□□□□□ -2.14
HOXD11P31277 RNA5SP330-201ENST00000517096 96 ntBASIC1.7□□□□□ -2.14
HOXD11P31277 MIR4661-201ENST00000582720 75 ntBASIC1.7□□□□□ -2.14
HOXD11P31277 MIR5683-201ENST00000636514 76 ntBASIC1.7□□□□□ -2.14
HOXD11P31277 RNU6-901P-201ENST00000384593 106 ntBASIC1.69□□□□□ -2.14
HOXD11P31277 uc_338.17-201ENST00000619633 179 ntBASIC1.69□□□□□ -2.14
HOXD11P31277 hsa-mir-3158-1.1-201ENST00000637571 81 ntBASIC1.69□□□□□ -2.14
HOXD11P31277 MIR924-201ENST00000638017 53 ntBASIC1.68□□□□□ -2.14
HOXD11P31277 RNU6-608P-201ENST00000383927 104 ntBASIC1.67□□□□□ -2.14
HOXD11P31277 AC087343.1-201ENST00000477341 475 ntBASIC1.67□□□□□ -2.14
HOXD11P31277 MIR5000-201ENST00000577717 103 ntBASIC1.67□□□□□ -2.14
HOXD11P31277 Y_RNA.519-201ENST00000384553 102 ntBASIC1.66□□□□□ -2.14
HOXD11P31277 RNU6-863P-201ENST00000515989 104 ntBASIC1.66□□□□□ -2.14
HOXD11P31277 SNORA67.6-201ENST00000391093 99 ntBASIC1.65□□□□□ -2.15
HOXD11P31277 AP002795.1-201ENST00000534879 84 ntBASIC1.64□□□□□ -2.15
HOXD11P31277 SNORD114-27-201ENST00000363766 70 ntBASIC1.63□□□□□ -2.15
HOXD11P31277 MIR6767-201ENST00000637302 66 ntBASIC1.63□□□□□ -2.15
HOXD11P31277 MGAT4C-209ENST00000611864 25116 ntAPPRIS P1 TSL 5 BASIC1.62□□□□□ -2.15
HOXD11P31277 MIR608-201ENST00000384820 100 ntBASIC1.61□□□□□ -2.15
HOXD11P31277 AL353691.2-201ENST00000443795 59 ntBASIC1.61□□□□□ -2.15
HOXD11P31277 RNA5SP67-201ENST00000516422 131 ntBASIC1.61□□□□□ -2.15
HOXD11P31277 RNU6ATAC22P-201ENST00000516794 89 ntBASIC1.61□□□□□ -2.15
HOXD11P31277 MIR548N-201ENST00000408742 75 ntBASIC1.6□□□□□ -2.15
HOXD11P31277 SNORA16.1-201ENST00000364597 132 ntBASIC1.59□□□□□ -2.15
HOXD11P31277 RNU4ATAC11P-201ENST00000515939 126 ntBASIC1.59□□□□□ -2.15
HOXD11P31277 MIR6514-201ENST00000622549 70 ntBASIC1.59□□□□□ -2.15
HOXD11P31277 SNORD48-201ENST00000364953 64 ntBASIC1.58□□□□□ -2.16
HOXD11P31277 LINC00345-201ENST00000443679 285 ntTSL 5 BASIC1.58□□□□□ -2.16
HOXD11P31277 SNORA31.24-201ENST00000517232 57 ntBASIC1.57□□□□□ -2.16
HOXD11P31277 OR2A41P-201ENST00000473586 105 ntBASIC1.56□□□□□ -2.16
HOXD11P31277 MIR4419B-201ENST00000577260 68 ntBASIC1.56□□□□□ -2.16
HOXD11P31277 Y_RNA.129-201ENST00000363392 110 ntBASIC1.55□□□□□ -2.16
HOXD11P31277 RNA5SP331-201ENST00000364986 107 ntBASIC1.55□□□□□ -2.16
HOXD11P31277 RNU6-110P-201ENST00000384508 104 ntBASIC1.54□□□□□ -2.16
Retrieved 100 of 98,524 protein–RNA pairs in 224 ms