Protein–RNA interactions for Protein: P31274

HOXC9, Homeobox protein Hox-C9, humanhuman

Predictions only

Length 260 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC9P31274 MIR4464-201ENST00000580818 92 ntBASIC-0.75□□□□□ -2.53
HOXC9P31274 MIR1297-201ENST00000637311 77 ntBASIC-0.75□□□□□ -2.53
HOXC9P31274 SNORD45.1-201ENST00000363181 77 ntBASIC-0.76□□□□□ -2.53
HOXC9P31274 RNA5SP368-201ENST00000364298 116 ntBASIC-0.76□□□□□ -2.53
HOXC9P31274 SNORD114-15-201ENST00000364687 72 ntBASIC-0.76□□□□□ -2.53
HOXC9P31274 Y_RNA.369-201ENST00000365568 117 ntBASIC-0.76□□□□□ -2.53
HOXC9P31274 MIR548C-201ENST00000384815 97 ntBASIC-0.76□□□□□ -2.53
HOXC9P31274 RNU6-1236P-201ENST00000517080 99 ntBASIC-0.76□□□□□ -2.53
HOXC9P31274 RNU6-315P-201ENST00000362666 107 ntBASIC-0.77□□□□□ -2.53
HOXC9P31274 AL500527.2-201ENST00000454105 95 ntBASIC-0.77□□□□□ -2.53
HOXC9P31274 SNORD18.2-201ENST00000459604 70 ntBASIC-0.77□□□□□ -2.53
HOXC9P31274 RNU6-431P-201ENST00000383874 107 ntBASIC-0.78□□□□□ -2.53
HOXC9P31274 RNU6ATAC29P-201ENST00000408088 125 ntBASIC-0.78□□□□□ -2.53
HOXC9P31274 RNU7-171P-201ENST00000459581 62 ntBASIC-0.78□□□□□ -2.53
HOXC9P31274 RNU6ATAC17P-201ENST00000516074 71 ntBASIC-0.78□□□□□ -2.53
HOXC9P31274 Y_RNA.246-201ENST00000364495 108 ntBASIC-0.79□□□□□ -2.54
HOXC9P31274 MIR519A2-201ENST00000384990 87 ntBASIC-0.79□□□□□ -2.54
HOXC9P31274 MIR147A-201ENST00000385079 72 ntBASIC-0.79□□□□□ -2.54
HOXC9P31274 SNORD83B-201ENST00000386745 93 ntBASIC-0.79□□□□□ -2.54
HOXC9P31274 HOTAIRM1_3.1-201ENST00000619974 59 ntBASIC-0.79□□□□□ -2.54
HOXC9P31274 MIR6888-201ENST00000621977 67 ntBASIC-0.79□□□□□ -2.54
HOXC9P31274 RNU6-1276P-201ENST00000365372 104 ntBASIC-0.8□□□□□ -2.54
HOXC9P31274 SNORD64-201ENST00000386683 67 ntBASIC-0.8□□□□□ -2.54
HOXC9P31274 TRAJ53-201ENST00000390485 66 ntAPPRIS P1 BASIC-0.8□□□□□ -2.54
HOXC9P31274 AL021921.1-201ENST00000442774 93 ntBASIC-0.8□□□□□ -2.54
HOXC9P31274 RNU7-154P-201ENST00000516194 62 ntBASIC-0.8□□□□□ -2.54
HOXC9P31274 RNU6-1094P-201ENST00000362416 104 ntBASIC-0.81□□□□□ -2.54
HOXC9P31274 RNU6-982P-201ENST00000516216 102 ntBASIC-0.81□□□□□ -2.54
HOXC9P31274 RNA5SP170-201ENST00000517150 101 ntBASIC-0.81□□□□□ -2.54
HOXC9P31274 AL445584.3-201ENST00000617173 78 ntBASIC-0.81□□□□□ -2.54
HOXC9P31274 RNU6-1246P-201ENST00000391064 107 ntBASIC-0.82□□□□□ -2.54
HOXC9P31274 MIR4712-201ENST00000583750 82 ntBASIC-0.82□□□□□ -2.54
HOXC9P31274 AC020913.3-201ENST00000594678 125 ntTSL 3 BASIC-0.82□□□□□ -2.54
HOXC9P31274 U2.7-201ENST00000619197 100 ntBASIC-0.82□□□□□ -2.54
HOXC9P31274 SNORD114-17-201ENST00000364699 75 ntBASIC-0.83□□□□□ -2.54
HOXC9P31274 snoU13.19-201ENST00000459148 104 ntBASIC-0.83□□□□□ -2.54
HOXC9P31274 Y_RNA.698-201ENST00000516798 118 ntBASIC-0.83□□□□□ -2.54
HOXC9P31274 MIR4499-201ENST00000584834 69 ntBASIC-0.83□□□□□ -2.54
HOXC9P31274 MIR1245B-201ENST00000636115 69 ntBASIC-0.83□□□□□ -2.54
HOXC9P31274 MIR382-201ENST00000637119 76 ntBASIC-0.83□□□□□ -2.54
HOXC9P31274 MIR664A-201ENST00000626086 82 ntBASIC-0.84□□□□□ -2.54
HOXC9P31274 Y_RNA.313-201ENST00000365095 103 ntBASIC-0.85□□□□□ -2.55
HOXC9P31274 SCARNA18B-201ENST00000458806 135 ntBASIC-0.85□□□□□ -2.55
HOXC9P31274 SCARNA21.1-201ENST00000515996 128 ntBASIC-0.85□□□□□ -2.55
HOXC9P31274 SCARNA17-201ENST00000516183 144 ntBASIC-0.85□□□□□ -2.55
HOXC9P31274 MIR548AG1-201ENST00000579932 66 ntBASIC-0.85□□□□□ -2.55
HOXC9P31274 AC062037.1-201ENST00000605302 128 ntBASIC-0.85□□□□□ -2.55
HOXC9P31274 uc_338.19-201ENST00000616808 99 ntBASIC-0.85□□□□□ -2.55
HOXC9P31274 RNU6-1298P-201ENST00000362456 101 ntBASIC-0.86□□□□□ -2.55
HOXC9P31274 RNU6-820P-201ENST00000384273 107 ntBASIC-0.87□□□□□ -2.55
HOXC9P31274 Y_RNA.610-201ENST00000410681 103 ntBASIC-0.87□□□□□ -2.55
HOXC9P31274 SNORD115-22-201ENST00000364456 82 ntBASIC-0.89□□□□□ -2.55
HOXC9P31274 Y_RNA.244-201ENST00000364484 109 ntBASIC-0.89□□□□□ -2.55
HOXC9P31274 RNU6-924P-201ENST00000362926 108 ntBASIC-0.9□□□□□ -2.55
HOXC9P31274 SNORD45A-201ENST00000384512 84 ntBASIC-0.9□□□□□ -2.55
HOXC9P31274 MTND4LP1-201ENST00000446263 157 ntBASIC-0.9□□□□□ -2.55
HOXC9P31274 RNU6-1089P-201ENST00000516473 104 ntBASIC-0.9□□□□□ -2.55
HOXC9P31274 MIR4666B-201ENST00000578142 81 ntBASIC-0.9□□□□□ -2.55
HOXC9P31274 MIR8053-201ENST00000613344 75 ntBASIC-0.9□□□□□ -2.55
HOXC9P31274 RNU6-1157P-201ENST00000384456 106 ntBASIC-0.91□□□□□ -2.56
HOXC9P31274 snoU83B.1-201ENST00000517136 88 ntBASIC-0.91□□□□□ -2.56
HOXC9P31274 RNY1P9-201ENST00000532431 109 ntBASIC-0.91□□□□□ -2.56
HOXC9P31274 AL078612.1-201ENST00000533009 150 ntTSL 5 BASIC-0.91□□□□□ -2.56
HOXC9P31274 MIR548AX-201ENST00000580117 73 ntBASIC-0.91□□□□□ -2.56
HOXC9P31274 Y_RNA.94-201ENST00000363068 106 ntBASIC-0.92□□□□□ -2.56
HOXC9P31274 MIR4324-201ENST00000584846 72 ntBASIC-0.92□□□□□ -2.56
HOXC9P31274 SNORD113.1-201ENST00000363280 73 ntBASIC-0.93□□□□□ -2.56
HOXC9P31274 RNU6-70P-201ENST00000516438 60 ntBASIC-0.93□□□□□ -2.56
HOXC9P31274 RNU6-668P-201ENST00000364180 107 ntBASIC-0.94□□□□□ -2.56
HOXC9P31274 SNORD73B-201ENST00000364394 72 ntBASIC-0.94□□□□□ -2.56
HOXC9P31274 RNU6-787P-201ENST00000384032 107 ntBASIC-0.94□□□□□ -2.56
HOXC9P31274 MIR378F-201ENST00000578143 78 ntBASIC-0.94□□□□□ -2.56
HOXC9P31274 MIR6738-201ENST00000619620 64 ntBASIC-0.94□□□□□ -2.56
HOXC9P31274 MIR154-201ENST00000385243 84 ntBASIC-0.95□□□□□ -2.56
HOXC9P31274 RNU7-134P-201ENST00000458997 64 ntBASIC-0.95□□□□□ -2.56
HOXC9P31274 SNORD63.1-201ENST00000516178 80 ntBASIC-0.95□□□□□ -2.56
HOXC9P31274 RNU7-174P-201ENST00000516248 59 ntBASIC-0.95□□□□□ -2.56
HOXC9P31274 MIR548V-201ENST00000584165 80 ntBASIC-0.95□□□□□ -2.56
HOXC9P31274 RNU6-1255P-201ENST00000363434 112 ntBASIC-0.96□□□□□ -2.56
HOXC9P31274 RNU6-1241P-201ENST00000384536 107 ntBASIC-0.96□□□□□ -2.56
HOXC9P31274 SNORA26.4-201ENST00000391188 123 ntBASIC-0.96□□□□□ -2.56
HOXC9P31274 SNORD115-33-201ENST00000363723 82 ntBASIC-0.97□□□□□ -2.56
HOXC9P31274 Y_RNA.788-201ENST00000622394 112 ntBASIC-0.97□□□□□ -2.56
HOXC9P31274 RNU6-1152P-201ENST00000384576 107 ntBASIC-0.98□□□□□ -2.57
HOXC9P31274 MIR29B1-201ENST00000385015 81 ntBASIC-0.98□□□□□ -2.57
HOXC9P31274 RNU7-88P-201ENST00000458752 63 ntBASIC-0.98□□□□□ -2.57
HOXC9P31274 MIR4306-201ENST00000583390 91 ntBASIC-0.98□□□□□ -2.57
HOXC9P31274 ULK3-223ENST00000631115 126 ntTSL 5 BASIC-0.98□□□□□ -2.57
HOXC9P31274 AP002795.1-201ENST00000534879 84 ntBASIC-0.99□□□□□ -2.57
HOXC9P31274 RNU6-10P-201ENST00000384036 107 ntBASIC-1□□□□□ -2.57
HOXC9P31274 RNU6-895P-201ENST00000384125 103 ntBASIC-1□□□□□ -2.57
HOXC9P31274 SNORA26.2-201ENST00000390922 122 ntBASIC-1□□□□□ -2.57
HOXC9P31274 Y_RNA.613-201ENST00000410726 97 ntBASIC-1□□□□□ -2.57
HOXC9P31274 MIR3134-201ENST00000579433 74 ntBASIC-1□□□□□ -2.57
HOXC9P31274 FAS-AS1.1-201ENST00000615327 126 ntBASIC-1□□□□□ -2.57
HOXC9P31274 RNU6-1233P-201ENST00000362922 102 ntBASIC-1.01□□□□□ -2.57
HOXC9P31274 RNU6-24P-201ENST00000384440 107 ntBASIC-1.01□□□□□ -2.57
HOXC9P31274 RNU6-246P-201ENST00000384702 107 ntBASIC-1.01□□□□□ -2.57
HOXC9P31274 RNY4P29-201ENST00000410801 97 ntBASIC-1.01□□□□□ -2.57
HOXC9P31274 MIR6818-201ENST00000621576 65 ntBASIC-1.01□□□□□ -2.57
Retrieved 100 of 98,524 protein–RNA pairs in 8.7 ms