Protein–RNA interactions for Protein: P28356

HOXD9, Homeobox protein Hox-D9, humanhuman

Predicted RBP Predictions only

Length 352 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD9P28356 MIR519A2-201ENST00000384990 87 ntBASIC0.03□□□□□ -2.4
HOXD9P28356 RNU6-1133P-201ENST00000410963 100 ntBASIC0.03□□□□□ -2.4
HOXD9P28356 AC104692.1-201ENST00000472406 90 ntBASIC0.03□□□□□ -2.4
HOXD9P28356 MIR5190-201ENST00000581537 80 ntBASIC0.03□□□□□ -2.4
HOXD9P28356 SNORD114-12-201ENST00000365400 75 ntBASIC0.02□□□□□ -2.41
HOXD9P28356 RNU7-88P-201ENST00000458752 63 ntBASIC0.02□□□□□ -2.41
HOXD9P28356 MIR371B-201ENST00000638082 66 ntBASIC0.02□□□□□ -2.41
HOXD9P28356 SNORD114-16-201ENST00000363044 70 ntBASIC0.01□□□□□ -2.41
HOXD9P28356 RNU6-973P-201ENST00000364690 107 ntBASIC0.01□□□□□ -2.41
HOXD9P28356 Y_RNA.325-201ENST00000365171 122 ntBASIC0.01□□□□□ -2.41
HOXD9P28356 RNU6ATAC29P-201ENST00000408088 125 ntBASIC0.01□□□□□ -2.41
HOXD9P28356 MIR4432-201ENST00000581823 84 ntBASIC0.01□□□□□ -2.41
HOXD9P28356 MIR4768-201ENST00000585270 74 ntBASIC0.01□□□□□ -2.41
HOXD9P28356 AL353803.5-201ENST00000599815 141 ntBASIC0.01□□□□□ -2.41
HOXD9P28356 AC103706.3-201ENST00000636297 85 ntBASIC0.01□□□□□ -2.41
HOXD9P28356 SNORD56B-201ENST00000384713 71 ntBASIC0□□□□□ -2.41
HOXD9P28356 MIR124-2-201ENST00000385081 109 ntBASIC0□□□□□ -2.41
HOXD9P28356 SNORD38.3-201ENST00000516599 73 ntBASIC0□□□□□ -2.41
HOXD9P28356 MIR4511-201ENST00000582784 87 ntBASIC0□□□□□ -2.41
HOXD9P28356 AL391099.1-201ENST00000624635 187 ntBASIC0□□□□□ -2.41
HOXD9P28356 MIR1295B-201ENST00000636144 60 ntBASIC0□□□□□ -2.41
HOXD9P28356 RNA5SP257-201ENST00000363023 116 ntBASIC-0.01□□□□□ -2.41
HOXD9P28356 SNORD49B-201ENST00000365172 72 ntBASIC-0.01□□□□□ -2.41
HOXD9P28356 RNU6-471P-201ENST00000383944 106 ntBASIC-0.01□□□□□ -2.41
HOXD9P28356 TRAJ9-201ENST00000390528 61 ntAPPRIS P1 BASIC-0.01□□□□□ -2.41
HOXD9P28356 U4.4-201ENST00000620626 117 ntBASIC-0.01□□□□□ -2.41
HOXD9P28356 Y_RNA.246-201ENST00000364495 108 ntBASIC-0.02□□□□□ -2.41
HOXD9P28356 AC096531.1-201ENST00000419107 107 ntBASIC-0.02□□□□□ -2.41
HOXD9P28356 HOTAIRM1_3.1-201ENST00000619974 59 ntBASIC-0.02□□□□□ -2.41
HOXD9P28356 Y_RNA.74-201ENST00000362911 99 ntBASIC-0.03□□□□□ -2.41
HOXD9P28356 SNORD114-11-201ENST00000363738 75 ntBASIC-0.03□□□□□ -2.41
HOXD9P28356 MIR527-201ENST00000385244 85 ntBASIC-0.03□□□□□ -2.41
HOXD9P28356 SNORD113-2-201ENST00000391082 72 ntBASIC-0.03□□□□□ -2.41
HOXD9P28356 RNA5SP169-201ENST00000517268 117 ntBASIC-0.03□□□□□ -2.41
HOXD9P28356 Y_RNA.340-201ENST00000365330 92 ntBASIC-0.04□□□□□ -2.42
HOXD9P28356 TRAJ54-201ENST00000390484 60 ntAPPRIS P1 BASIC-0.04□□□□□ -2.42
HOXD9P28356 SCARNA21.1-201ENST00000515996 128 ntBASIC-0.04□□□□□ -2.42
HOXD9P28356 SNORA18.1-201ENST00000363418 128 ntBASIC-0.05□□□□□ -2.42
HOXD9P28356 RNA5SP192-201ENST00000364404 120 ntBASIC-0.05□□□□□ -2.42
HOXD9P28356 Y_RNA.236-201ENST00000364427 111 ntBASIC-0.05□□□□□ -2.42
HOXD9P28356 TRAJ28-201ENST00000390509 66 ntAPPRIS P1 BASIC-0.05□□□□□ -2.42
HOXD9P28356 MIR6888-201ENST00000621977 67 ntBASIC-0.05□□□□□ -2.42
HOXD9P28356 SNORA62.4-201ENST00000365504 151 ntBASIC-0.06□□□□□ -2.42
HOXD9P28356 SNORA41B-201ENST00000384785 128 ntBASIC-0.06□□□□□ -2.42
HOXD9P28356 MIR579-201ENST00000385221 98 ntBASIC-0.06□□□□□ -2.42
HOXD9P28356 MIR4802-201ENST00000581881 80 ntBASIC-0.06□□□□□ -2.42
HOXD9P28356 MIR4788-201ENST00000639104 80 ntBASIC-0.06□□□□□ -2.42
HOXD9P28356 Y_RNA.109-201ENST00000363215 102 ntBASIC-0.07□□□□□ -2.42
HOXD9P28356 U7.5-201ENST00000517224 61 ntBASIC-0.07□□□□□ -2.42
HOXD9P28356 MIR4464-201ENST00000580818 92 ntBASIC-0.07□□□□□ -2.42
HOXD9P28356 AC108676.2-201ENST00000605225 163 ntBASIC-0.07□□□□□ -2.42
HOXD9P28356 MIR6854-201ENST00000614935 69 ntBASIC-0.07□□□□□ -2.42
HOXD9P28356 U2.18-201ENST00000622185 84 ntBASIC-0.07□□□□□ -2.42
HOXD9P28356 TRAJ42-201ENST00000390495 66 ntAPPRIS P1 BASIC-0.08□□□□□ -2.42
HOXD9P28356 MIR1265-201ENST00000408444 86 ntBASIC-0.08□□□□□ -2.42
HOXD9P28356 SNORD18.2-201ENST00000459604 70 ntBASIC-0.08□□□□□ -2.42
HOXD9P28356 Y_RNA.698-201ENST00000516798 118 ntBASIC-0.08□□□□□ -2.42
HOXD9P28356 RNU6-92P-201ENST00000605893 104 ntBASIC-0.08□□□□□ -2.42
HOXD9P28356 RNU6-458P-201ENST00000384179 107 ntBASIC-0.09□□□□□ -2.42
HOXD9P28356 RNU6-1184P-201ENST00000384588 108 ntBASIC-0.09□□□□□ -2.42
HOXD9P28356 RNU6-788P-201ENST00000390967 104 ntBASIC-0.09□□□□□ -2.42
HOXD9P28356 AC114755.3-201ENST00000481111 251 ntBASIC-0.09□□□□□ -2.42
HOXD9P28356 hsa-mir-3130-1.1-201ENST00000579223 75 ntBASIC-0.09□□□□□ -2.42
HOXD9P28356 MIR4280-201ENST00000582178 76 ntBASIC-0.09□□□□□ -2.42
HOXD9P28356 U6.58-201ENST00000613107 107 ntBASIC-0.09□□□□□ -2.42
HOXD9P28356 SNORA25.5-201ENST00000363782 126 ntBASIC-0.1□□□□□ -2.43
HOXD9P28356 Y_RNA.282-201ENST00000364793 102 ntBASIC-0.1□□□□□ -2.43
HOXD9P28356 RNU6-246P-201ENST00000384702 107 ntBASIC-0.1□□□□□ -2.43
HOXD9P28356 MIR204-201ENST00000385200 110 ntBASIC-0.1□□□□□ -2.43
HOXD9P28356 AC110620.1-201ENST00000416042 228 ntBASIC-0.1□□□□□ -2.43
HOXD9P28356 SNORD22.1-201ENST00000516331 125 ntBASIC-0.1□□□□□ -2.43
HOXD9P28356 AL590491.3-201ENST00000610731 82 ntBASIC-0.1□□□□□ -2.43
HOXD9P28356 AL445584.3-201ENST00000617173 78 ntBASIC-0.1□□□□□ -2.43
HOXD9P28356 MIR6759-201ENST00000638110 65 ntBASIC-0.1□□□□□ -2.43
HOXD9P28356 SNORD60.1-201ENST00000362451 73 ntBASIC-0.11□□□□□ -2.43
HOXD9P28356 RNU6-669P-201ENST00000365575 107 ntBASIC-0.11□□□□□ -2.43
HOXD9P28356 MIR548Q-201ENST00000408404 100 ntBASIC-0.11□□□□□ -2.43
HOXD9P28356 AC125388.1-201ENST00000459631 156 ntBASIC-0.11□□□□□ -2.43
HOXD9P28356 RNA5SP66-201ENST00000517178 101 ntBASIC-0.11□□□□□ -2.43
HOXD9P28356 MIR4263-201ENST00000584745 83 ntBASIC-0.11□□□□□ -2.43
HOXD9P28356 MIR3666-201ENST00000607845 111 ntBASIC-0.11□□□□□ -2.43
HOXD9P28356 MIR633-201ENST00000384821 98 ntBASIC-0.12□□□□□ -2.43
HOXD9P28356 SNORD116.2-201ENST00000391251 93 ntBASIC-0.12□□□□□ -2.43
HOXD9P28356 RNU6ATAC11P-201ENST00000408541 125 ntBASIC-0.12□□□□□ -2.43
HOXD9P28356 AP000533.3-201ENST00000447704 118 ntBASIC-0.12□□□□□ -2.43
HOXD9P28356 SNORD4A-201ENST00000459174 72 ntBASIC-0.12□□□□□ -2.43
HOXD9P28356 RNU6-1079P-201ENST00000362861 110 ntBASIC-0.13□□□□□ -2.43
HOXD9P28356 SNORD1B-201ENST00000363091 84 ntBASIC-0.13□□□□□ -2.43
HOXD9P28356 RNU6-598P-201ENST00000364017 105 ntBASIC-0.13□□□□□ -2.43
HOXD9P28356 SNORA32.1-201ENST00000364514 115 ntBASIC-0.13□□□□□ -2.43
HOXD9P28356 Y_RNA.696-201ENST00000516725 107 ntBASIC-0.13□□□□□ -2.43
HOXD9P28356 MIR466-201ENST00000580653 84 ntBASIC-0.13□□□□□ -2.43
HOXD9P28356 AC093726.3-201ENST00000637588 150 ntBASIC-0.13□□□□□ -2.43
HOXD9P28356 SNORD114-17-201ENST00000364699 75 ntBASIC-0.14□□□□□ -2.43
HOXD9P28356 RNU6-172P-201ENST00000411000 93 ntBASIC-0.14□□□□□ -2.43
HOXD9P28356 RPL35AP4-201ENST00000412007 102 ntBASIC-0.14□□□□□ -2.43
HOXD9P28356 RNA5SP285-201ENST00000516619 119 ntBASIC-0.14□□□□□ -2.43
HOXD9P28356 RNU6-1238P-201ENST00000517215 102 ntBASIC-0.14□□□□□ -2.43
HOXD9P28356 MIR4636-201ENST00000582271 80 ntBASIC-0.14□□□□□ -2.43
HOXD9P28356 MIR6851-201ENST00000617060 67 ntBASIC-0.14□□□□□ -2.43
Retrieved 100 of 98,524 protein–RNA pairs in 182.9 ms