Protein–RNA interactions for Protein: Q9Y2N7

HIF3A, Hypoxia-inducible factor 3-alpha, humanhuman

Predictions only

Length 669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HIF3AQ9Y2N7 MIR6788-201ENST00000618842 66 ntBASIC0.83□□□□□ -2.28
HIF3AQ9Y2N7 SNORD115-25-201ENST00000362619 82 ntBASIC0.82□□□□□ -2.28
HIF3AQ9Y2N7 RNU6ATAC20P-201ENST00000408436 127 ntBASIC0.82□□□□□ -2.28
HIF3AQ9Y2N7 SNORD2-201ENST00000459163 69 ntBASIC0.82□□□□□ -2.28
HIF3AQ9Y2N7 RNU7-119P-201ENST00000459279 63 ntBASIC0.82□□□□□ -2.28
HIF3AQ9Y2N7 MIR499B-201ENST00000636498 73 ntBASIC0.82□□□□□ -2.28
HIF3AQ9Y2N7 MIR532-201ENST00000385025 91 ntBASIC0.81□□□□□ -2.28
HIF3AQ9Y2N7 RNU6-848P-201ENST00000515948 107 ntBASIC0.81□□□□□ -2.28
HIF3AQ9Y2N7 RNU6-617P-201ENST00000516147 107 ntBASIC0.81□□□□□ -2.28
HIF3AQ9Y2N7 RNU6-473P-201ENST00000516164 107 ntBASIC0.81□□□□□ -2.28
HIF3AQ9Y2N7 RNU6-1049P-201ENST00000516414 107 ntBASIC0.81□□□□□ -2.28
HIF3AQ9Y2N7 RNU6-782P-201ENST00000516852 104 ntBASIC0.81□□□□□ -2.28
HIF3AQ9Y2N7 MIR4653-201ENST00000585107 83 ntBASIC0.81□□□□□ -2.28
HIF3AQ9Y2N7 RN7SL660P-201ENST00000614852 299 ntBASIC0.81□□□□□ -2.28
HIF3AQ9Y2N7 RNU6ATAC29P-201ENST00000408088 125 ntBASIC0.8□□□□□ -2.28
HIF3AQ9Y2N7 MIR548J-201ENST00000408833 112 ntBASIC0.8□□□□□ -2.28
HIF3AQ9Y2N7 AC022709.1-201ENST00000615967 87 ntBASIC0.8□□□□□ -2.28
HIF3AQ9Y2N7 MIRLET7B-201ENST00000385140 83 ntBASIC0.79□□□□□ -2.28
HIF3AQ9Y2N7 AC098934.3-201ENST00000430450 190 ntBASIC0.79□□□□□ -2.28
HIF3AQ9Y2N7 RNA5SP480-201ENST00000516840 109 ntBASIC0.79□□□□□ -2.28
HIF3AQ9Y2N7 MIR6857-201ENST00000613267 93 ntBASIC0.78□□□□□ -2.28
HIF3AQ9Y2N7 RNU6-502P-201ENST00000362419 108 ntBASIC0.77□□□□□ -2.29
HIF3AQ9Y2N7 Y_RNA.109-201ENST00000363215 102 ntBASIC0.77□□□□□ -2.29
HIF3AQ9Y2N7 SNORD114-2-201ENST00000363953 78 ntBASIC0.77□□□□□ -2.29
HIF3AQ9Y2N7 RNA5SP128-201ENST00000365305 116 ntBASIC0.77□□□□□ -2.29
HIF3AQ9Y2N7 RNU7-154P-201ENST00000516194 62 ntBASIC0.77□□□□□ -2.29
HIF3AQ9Y2N7 MIR3925-201ENST00000584674 77 ntBASIC0.77□□□□□ -2.29
HIF3AQ9Y2N7 MIR6767-201ENST00000637302 66 ntBASIC0.77□□□□□ -2.29
HIF3AQ9Y2N7 CALCRL-202ENST00000409998 5223 ntAPPRIS P1 TSL 5 BASIC0.76□□□□□ -2.29
HIF3AQ9Y2N7 MIR598-201ENST00000384868 97 ntBASIC0.76□□□□□ -2.29
HIF3AQ9Y2N7 AP000676.1-201ENST00000533307 52 ntBASIC0.76□□□□□ -2.29
HIF3AQ9Y2N7 MIR7110-201ENST00000612638 86 ntBASIC0.76□□□□□ -2.29
HIF3AQ9Y2N7 SNORD1B-201ENST00000363091 84 ntBASIC0.75□□□□□ -2.29
HIF3AQ9Y2N7 RNU6-246P-201ENST00000384702 107 ntBASIC0.75□□□□□ -2.29
HIF3AQ9Y2N7 RNU6-172P-201ENST00000411000 93 ntBASIC0.75□□□□□ -2.29
HIF3AQ9Y2N7 RNU6-351P-201ENST00000516097 100 ntBASIC0.75□□□□□ -2.29
HIF3AQ9Y2N7 SNORA40.16-201ENST00000517238 121 ntBASIC0.75□□□□□ -2.29
HIF3AQ9Y2N7 Y_RNA.379-201ENST00000365653 102 ntBASIC0.74□□□□□ -2.29
HIF3AQ9Y2N7 RNU6-945P-201ENST00000383947 107 ntBASIC0.74□□□□□ -2.29
HIF3AQ9Y2N7 RNU6-863P-201ENST00000515989 104 ntBASIC0.74□□□□□ -2.29
HIF3AQ9Y2N7 RNU6-810P-201ENST00000364001 107 ntBASIC0.73□□□□□ -2.29
HIF3AQ9Y2N7 RNU6-458P-201ENST00000384179 107 ntBASIC0.73□□□□□ -2.29
HIF3AQ9Y2N7 MIR146A-201ENST00000385201 99 ntBASIC0.73□□□□□ -2.29
HIF3AQ9Y2N7 RNU4-88P-201ENST00000411220 86 ntBASIC0.73□□□□□ -2.29
HIF3AQ9Y2N7 RNA5SP470-201ENST00000516463 106 ntBASIC0.73□□□□□ -2.29
HIF3AQ9Y2N7 SCARNA11.2-201ENST00000517183 154 ntBASIC0.73□□□□□ -2.29
HIF3AQ9Y2N7 U6.58-201ENST00000613107 107 ntBASIC0.73□□□□□ -2.29
HIF3AQ9Y2N7 MIR5000-201ENST00000577717 103 ntBASIC0.72□□□□□ -2.29
HIF3AQ9Y2N7 RNU6-753P-201ENST00000363926 107 ntBASIC0.71□□□□□ -2.3
HIF3AQ9Y2N7 AC008883.1-201ENST00000506562 193 ntTSL 3 BASIC0.71□□□□□ -2.3
HIF3AQ9Y2N7 MIR4698-201ENST00000577795 80 ntBASIC0.71□□□□□ -2.3
HIF3AQ9Y2N7 MIR3973-201ENST00000579824 107 ntBASIC0.71□□□□□ -2.3
HIF3AQ9Y2N7 LINC01984-201ENST00000583863 301 ntTSL 3 BASIC0.71□□□□□ -2.3
HIF3AQ9Y2N7 SPRY4-IT1_2.1-201ENST00000612613 121 ntBASIC0.71□□□□□ -2.3
HIF3AQ9Y2N7 PVT1_3.1-201ENST00000620853 95 ntBASIC0.71□□□□□ -2.3
HIF3AQ9Y2N7 MIR876-201ENST00000401147 81 ntBASIC0.7□□□□□ -2.3
HIF3AQ9Y2N7 CPEB3_ribozyme.1-201ENST00000408115 78 ntBASIC0.7□□□□□ -2.3
HIF3AQ9Y2N7 AL353803.5-201ENST00000599815 141 ntBASIC0.7□□□□□ -2.3
HIF3AQ9Y2N7 MIR373-201ENST00000362273 69 ntBASIC0.69□□□□□ -2.3
HIF3AQ9Y2N7 SNORD44.1-201ENST00000363202 61 ntBASIC0.69□□□□□ -2.3
HIF3AQ9Y2N7 SNORD114-26-201ENST00000363543 72 ntBASIC0.69□□□□□ -2.3
HIF3AQ9Y2N7 CYP3A137P-201ENST00000562436 69 ntBASIC0.69□□□□□ -2.3
HIF3AQ9Y2N7 HOTAIRM1_3.1-201ENST00000619974 59 ntBASIC0.69□□□□□ -2.3
HIF3AQ9Y2N7 MIR429-201ENST00000362106 83 ntBASIC0.68□□□□□ -2.3
HIF3AQ9Y2N7 MIR103A1-201ENST00000362165 78 ntBASIC0.68□□□□□ -2.3
HIF3AQ9Y2N7 MIR579-201ENST00000385221 98 ntBASIC0.68□□□□□ -2.3
HIF3AQ9Y2N7 SNORA40B-201ENST00000385573 128 ntBASIC0.68□□□□□ -2.3
HIF3AQ9Y2N7 RNU6ATAC27P-201ENST00000408289 119 ntBASIC0.68□□□□□ -2.3
HIF3AQ9Y2N7 SNORA68.3-201ENST00000515906 83 ntBASIC0.68□□□□□ -2.3
HIF3AQ9Y2N7 TRGJP-201ENST00000390338 61 ntAPPRIS P1 BASIC0.67□□□□□ -2.3
HIF3AQ9Y2N7 RNA5SP436-201ENST00000516020 115 ntBASIC0.67□□□□□ -2.3
HIF3AQ9Y2N7 RNA5SP121-201ENST00000516537 101 ntBASIC0.67□□□□□ -2.3
HIF3AQ9Y2N7 uc_338.36-201ENST00000622331 158 ntBASIC0.67□□□□□ -2.3
HIF3AQ9Y2N7 MIR6866-201ENST00000638146 69 ntBASIC0.67□□□□□ -2.3
HIF3AQ9Y2N7 ZNF518A-209ENST00000614149 7911 ntAPPRIS P1 TSL 5 BASIC0.67□□□□□ -2.3
HIF3AQ9Y2N7 Y_RNA.540-201ENST00000384638 111 ntBASIC0.66□□□□□ -2.3
HIF3AQ9Y2N7 MIR4432-201ENST00000581823 84 ntBASIC0.66□□□□□ -2.3
HIF3AQ9Y2N7 U2.18-201ENST00000622185 84 ntBASIC0.66□□□□□ -2.3
HIF3AQ9Y2N7 snoR1.1-201ENST00000628177 80 ntBASIC0.66□□□□□ -2.3
HIF3AQ9Y2N7 MIR216A-201ENST00000385063 110 ntBASIC0.65□□□□□ -2.31
HIF3AQ9Y2N7 TRAJ22-201ENST00000390515 63 ntAPPRIS P1 BASIC0.65□□□□□ -2.31
HIF3AQ9Y2N7 RNU6-980P-201ENST00000516925 103 ntBASIC0.65□□□□□ -2.31
HIF3AQ9Y2N7 MIR6779-201ENST00000617283 64 ntBASIC0.65□□□□□ -2.31
HIF3AQ9Y2N7 MIR106A-201ENST00000384870 81 ntBASIC0.64□□□□□ -2.31
HIF3AQ9Y2N7 MIR643-201ENST00000385267 97 ntBASIC0.64□□□□□ -2.31
HIF3AQ9Y2N7 LINC00345-201ENST00000443679 285 ntTSL 5 BASIC0.64□□□□□ -2.31
HIF3AQ9Y2N7 RNU6-598P-201ENST00000364017 105 ntBASIC0.63□□□□□ -2.31
HIF3AQ9Y2N7 SNORD115-23-201ENST00000364461 82 ntBASIC0.63□□□□□ -2.31
HIF3AQ9Y2N7 RNU6-127P-201ENST00000390897 107 ntBASIC0.63□□□□□ -2.31
HIF3AQ9Y2N7 RN7SL793P-201ENST00000583259 296 ntBASIC0.63□□□□□ -2.31
HIF3AQ9Y2N7 RNU4-33P-201ENST00000364316 85 ntBASIC0.62□□□□□ -2.31
HIF3AQ9Y2N7 AC108740.1-201ENST00000498629 225 ntBASIC0.62□□□□□ -2.31
HIF3AQ9Y2N7 MIR4714-201ENST00000580728 77 ntBASIC0.62□□□□□ -2.31
HIF3AQ9Y2N7 MIR4490-201ENST00000582647 84 ntBASIC0.62□□□□□ -2.31
HIF3AQ9Y2N7 RNA5SP98-201ENST00000363158 137 ntBASIC0.61□□□□□ -2.31
HIF3AQ9Y2N7 RNA5SP325-201ENST00000363756 130 ntBASIC0.61□□□□□ -2.31
HIF3AQ9Y2N7 RNU6-815P-201ENST00000384080 113 ntBASIC0.61□□□□□ -2.31
HIF3AQ9Y2N7 AC108676.2-201ENST00000605225 163 ntBASIC0.61□□□□□ -2.31
HIF3AQ9Y2N7 MIR6835-201ENST00000621552 64 ntBASIC0.61□□□□□ -2.31
HIF3AQ9Y2N7 RNU6-35P-201ENST00000384530 107 ntBASIC0.6□□□□□ -2.31
Retrieved 100 of 98,524 protein–RNA pairs in 182.5 ms