Protein–RNA interactions for Protein: Q9Y2B5

VPS9D1, VPS9 domain-containing protein 1, humanhuman

Predictions only

Length 631 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1Q9Y2B5 U7.5-201ENST00000517224 61 ntBASIC1.39□□□□□ -2.19
VPS9D1Q9Y2B5 MIR8070-201ENST00000616510 88 ntBASIC1.39□□□□□ -2.19
VPS9D1Q9Y2B5 TRMT112P2-201ENST00000512910 132 ntBASIC1.38□□□□□ -2.19
VPS9D1Q9Y2B5 Y_RNA.698-201ENST00000516798 118 ntBASIC1.38□□□□□ -2.19
VPS9D1Q9Y2B5 SNORA25.18-201ENST00000607153 114 ntBASIC1.38□□□□□ -2.19
VPS9D1Q9Y2B5 Y_RNA.423-201ENST00000384057 113 ntBASIC1.37□□□□□ -2.19
VPS9D1Q9Y2B5 RNU6-59P-201ENST00000384787 107 ntBASIC1.37□□□□□ -2.19
VPS9D1Q9Y2B5 RNU7-88P-201ENST00000458752 63 ntBASIC1.37□□□□□ -2.19
VPS9D1Q9Y2B5 RNU6-1232P-201ENST00000516299 86 ntBASIC1.37□□□□□ -2.19
VPS9D1Q9Y2B5 MIR7974-201ENST00000615835 79 ntBASIC1.37□□□□□ -2.19
VPS9D1Q9Y2B5 SNORA36.2-201ENST00000384004 127 ntBASIC1.36□□□□□ -2.19
VPS9D1Q9Y2B5 MIR1287-201ENST00000408492 90 ntBASIC1.36□□□□□ -2.19
VPS9D1Q9Y2B5 AC098934.3-201ENST00000430450 190 ntBASIC1.36□□□□□ -2.19
VPS9D1Q9Y2B5 SNORD63.1-201ENST00000516178 80 ntBASIC1.36□□□□□ -2.19
VPS9D1Q9Y2B5 snoR1.1-201ENST00000628177 80 ntBASIC1.36□□□□□ -2.19
VPS9D1Q9Y2B5 SNORD118-201ENST00000363593 134 ntBASIC1.35□□□□□ -2.19
VPS9D1Q9Y2B5 MIR150-201ENST00000385048 84 ntBASIC1.35□□□□□ -2.19
VPS9D1Q9Y2B5 RNU6-1174P-201ENST00000517278 101 ntBASIC1.35□□□□□ -2.19
VPS9D1Q9Y2B5 GNAS-AS1_4.1-201ENST00000616546 112 ntBASIC1.35□□□□□ -2.19
VPS9D1Q9Y2B5 MIR501-201ENST00000390204 84 ntBASIC1.34□□□□□ -2.19
VPS9D1Q9Y2B5 MIR548H4-201ENST00000408689 111 ntBASIC1.34□□□□□ -2.19
VPS9D1Q9Y2B5 ACA64.5-201ENST00000516207 127 ntBASIC1.34□□□□□ -2.19
VPS9D1Q9Y2B5 SNORD63.2-201ENST00000516303 64 ntBASIC1.34□□□□□ -2.19
VPS9D1Q9Y2B5 RNA5SP61-201ENST00000516453 100 ntBASIC1.34□□□□□ -2.19
VPS9D1Q9Y2B5 AL353765.1-201ENST00000605514 183 ntBASIC1.34□□□□□ -2.19
VPS9D1Q9Y2B5 RN7SL660P-201ENST00000614852 299 ntBASIC1.34□□□□□ -2.19
VPS9D1Q9Y2B5 ZNF518A-210ENST00000624776 7994 ntAPPRIS P1 TSL 1 (best) BASIC1.34□□□□□ -2.2
VPS9D1Q9Y2B5 NMTRQ-TTG12-1-201ENST00000467595 72 ntBASIC1.33□□□□□ -2.2
VPS9D1Q9Y2B5 AP000676.1-201ENST00000533307 52 ntBASIC1.33□□□□□ -2.2
VPS9D1Q9Y2B5 MTRNR2L9-201ENST00000622562 75 ntBASIC1.33□□□□□ -2.2
VPS9D1Q9Y2B5 MIR140-201ENST00000385282 100 ntBASIC1.32□□□□□ -2.2
VPS9D1Q9Y2B5 MGAT4C-209ENST00000611864 25116 ntAPPRIS P1 TSL 5 BASIC1.32□□□□□ -2.2
VPS9D1Q9Y2B5 Y_RNA.321-201ENST00000365149 102 ntBASIC1.31□□□□□ -2.2
VPS9D1Q9Y2B5 Y_RNA.327-201ENST00000365201 102 ntBASIC1.31□□□□□ -2.2
VPS9D1Q9Y2B5 RNU6-530P-201ENST00000391180 107 ntBASIC1.31□□□□□ -2.2
VPS9D1Q9Y2B5 SNORA40.8-201ENST00000411034 126 ntBASIC1.31□□□□□ -2.2
VPS9D1Q9Y2B5 RNU6-848P-201ENST00000515948 107 ntBASIC1.3□□□□□ -2.2
VPS9D1Q9Y2B5 RNU6-617P-201ENST00000516147 107 ntBASIC1.3□□□□□ -2.2
VPS9D1Q9Y2B5 RNU6-473P-201ENST00000516164 107 ntBASIC1.3□□□□□ -2.2
VPS9D1Q9Y2B5 RNU6-1049P-201ENST00000516414 107 ntBASIC1.3□□□□□ -2.2
VPS9D1Q9Y2B5 RNU6-1223P-201ENST00000517124 104 ntBASIC1.3□□□□□ -2.2
VPS9D1Q9Y2B5 MIR4421-201ENST00000578133 69 ntBASIC1.3□□□□□ -2.2
VPS9D1Q9Y2B5 MIR3170-201ENST00000582699 77 ntBASIC1.3□□□□□ -2.2
VPS9D1Q9Y2B5 MIR7111-201ENST00000619751 72 ntBASIC1.3□□□□□ -2.2
VPS9D1Q9Y2B5 MIR26B-201ENST00000362251 77 ntBASIC1.29□□□□□ -2.2
VPS9D1Q9Y2B5 AC138207.3-201ENST00000585289 166 ntBASIC1.29□□□□□ -2.2
VPS9D1Q9Y2B5 MIR6888-201ENST00000621977 67 ntBASIC1.29□□□□□ -2.2
VPS9D1Q9Y2B5 RNU6-392P-201ENST00000364926 101 ntBASIC1.28□□□□□ -2.2
VPS9D1Q9Y2B5 SNORD71-201ENST00000411292 86 ntBASIC1.28□□□□□ -2.2
VPS9D1Q9Y2B5 MIR4464-201ENST00000580818 92 ntBASIC1.28□□□□□ -2.2
VPS9D1Q9Y2B5 MIR499A-201ENST00000384903 122 ntBASIC1.27□□□□□ -2.21
VPS9D1Q9Y2B5 RNU6-894P-201ENST00000517094 105 ntBASIC1.27□□□□□ -2.21
VPS9D1Q9Y2B5 SNORA62.4-201ENST00000365504 151 ntBASIC1.26□□□□□ -2.21
VPS9D1Q9Y2B5 MIR106A-201ENST00000384870 81 ntBASIC1.26□□□□□ -2.21
VPS9D1Q9Y2B5 MIR876-201ENST00000401147 81 ntBASIC1.26□□□□□ -2.21
VPS9D1Q9Y2B5 AC068338.1-201ENST00000565567 176 ntBASIC1.26□□□□□ -2.21
VPS9D1Q9Y2B5 MIR3660-201ENST00000584845 100 ntBASIC1.26□□□□□ -2.21
VPS9D1Q9Y2B5 AL445584.3-201ENST00000617173 78 ntBASIC1.26□□□□□ -2.21
VPS9D1Q9Y2B5 RNU6-939P-201ENST00000384634 107 ntBASIC1.25□□□□□ -2.21
VPS9D1Q9Y2B5 MIR760-201ENST00000390220 80 ntBASIC1.25□□□□□ -2.21
VPS9D1Q9Y2B5 MIR6755-201ENST00000619993 66 ntBASIC1.25□□□□□ -2.21
VPS9D1Q9Y2B5 RNU6-1111P-201ENST00000391118 107 ntBASIC1.24□□□□□ -2.21
VPS9D1Q9Y2B5 MIR1276-201ENST00000408707 83 ntBASIC1.24□□□□□ -2.21
VPS9D1Q9Y2B5 MIR3925-201ENST00000584674 77 ntBASIC1.24□□□□□ -2.21
VPS9D1Q9Y2B5 AC104408.1-201ENST00000605241 170 ntBASIC1.23□□□□□ -2.21
VPS9D1Q9Y2B5 MIR518A1-201ENST00000385068 85 ntBASIC1.22□□□□□ -2.21
VPS9D1Q9Y2B5 RNU6-1326P-201ENST00000391262 107 ntBASIC1.22□□□□□ -2.21
VPS9D1Q9Y2B5 Y_RNA.613-201ENST00000410726 97 ntBASIC1.22□□□□□ -2.21
VPS9D1Q9Y2B5 AL353770.2-201ENST00000620024 78 ntBASIC1.22□□□□□ -2.21
VPS9D1Q9Y2B5 MIR4317-201ENST00000637586 65 ntBASIC1.22□□□□□ -2.21
VPS9D1Q9Y2B5 CEP290-201ENST00000309041 7616 ntAPPRIS ALT1 TSL 5 BASIC1.22□□□□□ -2.21
VPS9D1Q9Y2B5 CALCRL-202ENST00000409998 5223 ntAPPRIS P1 TSL 5 BASIC1.21□□□□□ -2.22
VPS9D1Q9Y2B5 RNU6-1133P-201ENST00000410963 100 ntBASIC1.21□□□□□ -2.22
VPS9D1Q9Y2B5 RNU4-54P-201ENST00000516428 129 ntBASIC1.21□□□□□ -2.22
VPS9D1Q9Y2B5 Y_RNA.118-201ENST00000363300 101 ntBASIC1.2□□□□□ -2.22
VPS9D1Q9Y2B5 RNA5SP128-201ENST00000365305 116 ntBASIC1.2□□□□□ -2.22
VPS9D1Q9Y2B5 Y_RNA.355-201ENST00000365462 98 ntBASIC1.2□□□□□ -2.22
VPS9D1Q9Y2B5 RNA5SP102-201ENST00000516865 106 ntBASIC1.2□□□□□ -2.22
VPS9D1Q9Y2B5 AL391099.1-201ENST00000624635 187 ntBASIC1.2□□□□□ -2.22
VPS9D1Q9Y2B5 EYS-205ENST00000393380 5450 ntTSL 1 (best) BASIC1.19□□□□□ -2.22
VPS9D1Q9Y2B5 MIR96-201ENST00000362288 78 ntBASIC1.19□□□□□ -2.22
VPS9D1Q9Y2B5 MIR1468-201ENST00000410600 86 ntBASIC1.19□□□□□ -2.22
VPS9D1Q9Y2B5 RNA5SP98-201ENST00000363158 137 ntBASIC1.18□□□□□ -2.22
VPS9D1Q9Y2B5 Y_RNA.345-201ENST00000365384 92 ntBASIC1.18□□□□□ -2.22
VPS9D1Q9Y2B5 uc_338.36-201ENST00000622331 158 ntBASIC1.18□□□□□ -2.22
VPS9D1Q9Y2B5 FAM135A-203ENST00000370479 5930 ntTSL 1 (best) BASIC1.17□□□□□ -2.22
VPS9D1Q9Y2B5 RNU4ATAC11P-201ENST00000515939 126 ntBASIC1.17□□□□□ -2.22
VPS9D1Q9Y2B5 SCARNA11.2-201ENST00000517183 154 ntBASIC1.17□□□□□ -2.22
VPS9D1Q9Y2B5 MIR4661-201ENST00000582720 75 ntBASIC1.17□□□□□ -2.22
VPS9D1Q9Y2B5 MIR6504-201ENST00000613520 61 ntBASIC1.17□□□□□ -2.22
VPS9D1Q9Y2B5 MIR499B-201ENST00000636498 73 ntBASIC1.17□□□□□ -2.22
VPS9D1Q9Y2B5 RNU6-1238P-201ENST00000517215 102 ntBASIC1.16□□□□□ -2.22
VPS9D1Q9Y2B5 MIR6507-201ENST00000613630 70 ntBASIC1.16□□□□□ -2.22
VPS9D1Q9Y2B5 SNORD114-27-201ENST00000363766 70 ntBASIC1.15□□□□□ -2.23
VPS9D1Q9Y2B5 MIR489-201ENST00000384923 84 ntBASIC1.15□□□□□ -2.23
VPS9D1Q9Y2B5 SNORD114-22-201ENST00000365423 72 ntBASIC1.14□□□□□ -2.23
VPS9D1Q9Y2B5 RNU7-129P-201ENST00000516128 62 ntBASIC1.14□□□□□ -2.23
VPS9D1Q9Y2B5 MIR6078-201ENST00000611069 100 ntBASIC1.14□□□□□ -2.23
VPS9D1Q9Y2B5 Y_RNA.206-201ENST00000364136 102 ntBASIC1.13□□□□□ -2.23
VPS9D1Q9Y2B5 RNU6-1047P-201ENST00000364418 107 ntBASIC1.13□□□□□ -2.23
Retrieved 100 of 98,524 protein–RNA pairs in 249.3 ms