Protein–RNA interactions for Protein: Q9UFE4

CCDC39, Coiled-coil domain-containing protein 39, humanhuman

Predictions only

Length 941 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39Q9UFE4 Y_RNA.423-201ENST00000384057 113 ntBASIC0.91□□□□□ -2.26
CCDC39Q9UFE4 RNU6-458P-201ENST00000384179 107 ntBASIC0.91□□□□□ -2.26
CCDC39Q9UFE4 MIR548F3-201ENST00000408509 87 ntBASIC0.91□□□□□ -2.26
CCDC39Q9UFE4 MIR3973-201ENST00000579824 107 ntBASIC0.91□□□□□ -2.26
CCDC39Q9UFE4 MIR4490-201ENST00000582647 84 ntBASIC0.91□□□□□ -2.26
CCDC39Q9UFE4 U6.58-201ENST00000613107 107 ntBASIC0.91□□□□□ -2.26
CCDC39Q9UFE4 MIR429-201ENST00000362106 83 ntBASIC0.9□□□□□ -2.27
CCDC39Q9UFE4 RNU6-502P-201ENST00000362419 108 ntBASIC0.9□□□□□ -2.27
CCDC39Q9UFE4 Y_RNA.118-201ENST00000363300 101 ntBASIC0.9□□□□□ -2.27
CCDC39Q9UFE4 RNU6-782P-201ENST00000516852 104 ntBASIC0.9□□□□□ -2.27
CCDC39Q9UFE4 MIR6504-201ENST00000613520 61 ntBASIC0.9□□□□□ -2.27
CCDC39Q9UFE4 SYCP2-202ENST00000371001 5479 ntAPPRIS P2 TSL 1 (best) BASIC0.9□□□□□ -2.27
CCDC39Q9UFE4 RNU6-1036P-201ENST00000383959 104 ntBASIC0.89□□□□□ -2.27
CCDC39Q9UFE4 MIR4677-201ENST00000584153 80 ntBASIC0.89□□□□□ -2.27
CCDC39Q9UFE4 MIR501-201ENST00000390204 84 ntBASIC0.88□□□□□ -2.27
CCDC39Q9UFE4 SNORA40.8-201ENST00000411034 126 ntBASIC0.88□□□□□ -2.27
CCDC39Q9UFE4 RNU6-419P-201ENST00000517030 63 ntBASIC0.88□□□□□ -2.27
CCDC39Q9UFE4 MIR4452-201ENST00000583004 71 ntBASIC0.88□□□□□ -2.27
CCDC39Q9UFE4 MIR6767-201ENST00000637302 66 ntBASIC0.88□□□□□ -2.27
CCDC39Q9UFE4 MIR6866-201ENST00000638146 69 ntBASIC0.88□□□□□ -2.27
CCDC39Q9UFE4 MIR373-201ENST00000362273 69 ntBASIC0.87□□□□□ -2.27
CCDC39Q9UFE4 SNORD114-22-201ENST00000365423 72 ntBASIC0.87□□□□□ -2.27
CCDC39Q9UFE4 RNU4-54P-201ENST00000516428 129 ntBASIC0.87□□□□□ -2.27
CCDC39Q9UFE4 MIR4653-201ENST00000585107 83 ntBASIC0.87□□□□□ -2.27
CCDC39Q9UFE4 MIR96-201ENST00000362288 78 ntBASIC0.86□□□□□ -2.27
CCDC39Q9UFE4 Y_RNA.355-201ENST00000365462 98 ntBASIC0.86□□□□□ -2.27
CCDC39Q9UFE4 RNU6-110P-201ENST00000384508 104 ntBASIC0.86□□□□□ -2.27
CCDC39Q9UFE4 HOTAIRM1_3.1-201ENST00000619974 59 ntBASIC0.86□□□□□ -2.27
CCDC39Q9UFE4 MIR6755-201ENST00000619993 66 ntBASIC0.86□□□□□ -2.27
CCDC39Q9UFE4 AC084368.1-201ENST00000620935 65 ntBASIC0.86□□□□□ -2.27
CCDC39Q9UFE4 RNU6-838P-201ENST00000363399 108 ntBASIC0.85□□□□□ -2.27
CCDC39Q9UFE4 RN7SL660P-201ENST00000614852 299 ntBASIC0.85□□□□□ -2.27
CCDC39Q9UFE4 MIR7111-201ENST00000619751 72 ntBASIC0.85□□□□□ -2.27
CCDC39Q9UFE4 RNU6-598P-201ENST00000364017 105 ntBASIC0.84□□□□□ -2.27
CCDC39Q9UFE4 MIR518A1-201ENST00000385068 85 ntBASIC0.84□□□□□ -2.27
CCDC39Q9UFE4 MIR579-201ENST00000385221 98 ntBASIC0.84□□□□□ -2.27
CCDC39Q9UFE4 RNU6ATAC31P-201ENST00000408513 126 ntBASIC0.84□□□□□ -2.27
CCDC39Q9UFE4 SNORD71-201ENST00000411292 86 ntBASIC0.84□□□□□ -2.27
CCDC39Q9UFE4 MIR6734-201ENST00000621166 68 ntBASIC0.84□□□□□ -2.27
CCDC39Q9UFE4 AL353803.5-201ENST00000599815 141 ntBASIC0.83□□□□□ -2.28
CCDC39Q9UFE4 RNU1-93P-201ENST00000364704 169 ntBASIC0.82□□□□□ -2.28
CCDC39Q9UFE4 RNU6-848P-201ENST00000515948 107 ntBASIC0.82□□□□□ -2.28
CCDC39Q9UFE4 RNU6-617P-201ENST00000516147 107 ntBASIC0.82□□□□□ -2.28
CCDC39Q9UFE4 RNU6-473P-201ENST00000516164 107 ntBASIC0.82□□□□□ -2.28
CCDC39Q9UFE4 RNU6-1049P-201ENST00000516414 107 ntBASIC0.82□□□□□ -2.28
CCDC39Q9UFE4 U2.18-201ENST00000622185 84 ntBASIC0.82□□□□□ -2.28
CCDC39Q9UFE4 RNU6-924P-201ENST00000362926 108 ntBASIC0.81□□□□□ -2.28
CCDC39Q9UFE4 MIR545-201ENST00000385085 106 ntBASIC0.81□□□□□ -2.28
CCDC39Q9UFE4 MIR760-201ENST00000390220 80 ntBASIC0.81□□□□□ -2.28
CCDC39Q9UFE4 RNU7-151P-201ENST00000516930 53 ntBASIC0.81□□□□□ -2.28
CCDC39Q9UFE4 SNORD115-23-201ENST00000364461 82 ntBASIC0.8□□□□□ -2.28
CCDC39Q9UFE4 MIR520E-201ENST00000384867 87 ntBASIC0.8□□□□□ -2.28
CCDC39Q9UFE4 RPS29P1-201ENST00000465274 159 ntBASIC0.8□□□□□ -2.28
CCDC39Q9UFE4 RNA5SP220-201ENST00000516298 104 ntBASIC0.8□□□□□ -2.28
CCDC39Q9UFE4 RNU6-1206P-201ENST00000516339 103 ntBASIC0.8□□□□□ -2.28
CCDC39Q9UFE4 RNU7-160P-201ENST00000516660 62 ntBASIC0.8□□□□□ -2.28
CCDC39Q9UFE4 MIR3925-201ENST00000584674 77 ntBASIC0.8□□□□□ -2.28
CCDC39Q9UFE4 MIR6835-201ENST00000621552 64 ntBASIC0.8□□□□□ -2.28
CCDC39Q9UFE4 RNU6-42P-201ENST00000384165 107 ntBASIC0.79□□□□□ -2.28
CCDC39Q9UFE4 AC098934.3-201ENST00000430450 190 ntBASIC0.79□□□□□ -2.28
CCDC39Q9UFE4 RNU6-247P-201ENST00000362636 107 ntBASIC0.78□□□□□ -2.28
CCDC39Q9UFE4 Y_RNA.69-201ENST00000362885 109 ntBASIC0.78□□□□□ -2.28
CCDC39Q9UFE4 RNA5SP128-201ENST00000365305 116 ntBASIC0.78□□□□□ -2.28
CCDC39Q9UFE4 MIR876-201ENST00000401147 81 ntBASIC0.78□□□□□ -2.28
CCDC39Q9UFE4 snoU13.18-201ENST00000459483 104 ntBASIC0.78□□□□□ -2.28
CCDC39Q9UFE4 MIR499B-201ENST00000636498 73 ntBASIC0.78□□□□□ -2.28
CCDC39Q9UFE4 RNU6-1262P-201ENST00000516217 96 ntBASIC0.77□□□□□ -2.29
CCDC39Q9UFE4 AP000676.1-201ENST00000533307 52 ntBASIC0.77□□□□□ -2.29
CCDC39Q9UFE4 AL590095.2-201ENST00000604136 117 ntBASIC0.77□□□□□ -2.29
CCDC39Q9UFE4 AC108676.2-201ENST00000605225 163 ntBASIC0.77□□□□□ -2.29
CCDC39Q9UFE4 MIR489-201ENST00000384923 84 ntBASIC0.76□□□□□ -2.29
CCDC39Q9UFE4 AC008883.1-201ENST00000506562 193 ntTSL 3 BASIC0.76□□□□□ -2.29
CCDC39Q9UFE4 Y_RNA.698-201ENST00000516798 118 ntBASIC0.76□□□□□ -2.29
CCDC39Q9UFE4 MIR4432-201ENST00000581823 84 ntBASIC0.76□□□□□ -2.29
CCDC39Q9UFE4 MIR106A-201ENST00000384870 81 ntBASIC0.75□□□□□ -2.29
CCDC39Q9UFE4 RNU7-129P-201ENST00000516128 62 ntBASIC0.74□□□□□ -2.29
CCDC39Q9UFE4 MIR548AA1-201ENST00000384971 97 ntBASIC0.73□□□□□ -2.29
CCDC39Q9UFE4 RNU6-696P-201ENST00000390834 107 ntBASIC0.73□□□□□ -2.29
CCDC39Q9UFE4 SCARNA11.2-201ENST00000517183 154 ntBASIC0.73□□□□□ -2.29
CCDC39Q9UFE4 snoR1.1-201ENST00000628177 80 ntBASIC0.73□□□□□ -2.29
CCDC39Q9UFE4 MIR508-201ENST00000384857 115 ntBASIC0.72□□□□□ -2.29
CCDC39Q9UFE4 MIR329-2-201ENST00000385029 84 ntBASIC0.72□□□□□ -2.29
CCDC39Q9UFE4 MIR125B1-201ENST00000385236 88 ntBASIC0.72□□□□□ -2.29
CCDC39Q9UFE4 RNU6-995P-201ENST00000391244 107 ntBASIC0.72□□□□□ -2.29
CCDC39Q9UFE4 MIR548J-201ENST00000408833 112 ntBASIC0.72□□□□□ -2.29
CCDC39Q9UFE4 CYP3A137P-201ENST00000562436 69 ntBASIC0.72□□□□□ -2.29
CCDC39Q9UFE4 MIR6788-201ENST00000618842 66 ntBASIC0.72□□□□□ -2.29
CCDC39Q9UFE4 RNU6-1267P-201ENST00000410747 107 ntBASIC0.71□□□□□ -2.3
CCDC39Q9UFE4 U7.5-201ENST00000517224 61 ntBASIC0.71□□□□□ -2.3
CCDC39Q9UFE4 MIR151B-201ENST00000584249 96 ntBASIC0.71□□□□□ -2.3
CCDC39Q9UFE4 RNU6-828P-201ENST00000364876 107 ntBASIC0.7□□□□□ -2.3
CCDC39Q9UFE4 MIR92A1-201ENST00000385233 78 ntBASIC0.7□□□□□ -2.3
CCDC39Q9UFE4 MIR4464-201ENST00000580818 92 ntBASIC0.7□□□□□ -2.3
CCDC39Q9UFE4 MIR6888-201ENST00000621977 67 ntBASIC0.7□□□□□ -2.3
CCDC39Q9UFE4 ZBTB41-201ENST00000367405 8478 ntAPPRIS P1 TSL 1 (best) BASIC0.7□□□□□ -2.3
CCDC39Q9UFE4 AL451105.1-201ENST00000450005 189 ntBASIC0.69□□□□□ -2.3
CCDC39Q9UFE4 RNU7-88P-201ENST00000458752 63 ntBASIC0.69□□□□□ -2.3
CCDC39Q9UFE4 RNU6-863P-201ENST00000515989 104 ntBASIC0.69□□□□□ -2.3
CCDC39Q9UFE4 RNA5SP121-201ENST00000516537 101 ntBASIC0.69□□□□□ -2.3
CCDC39Q9UFE4 RNU6-1223P-201ENST00000517124 104 ntBASIC0.69□□□□□ -2.3
Retrieved 100 of 98,524 protein–RNA pairs in 14.2 ms