Protein–RNA interactions for Protein: Q9NZ43

USE1, Vesicle transport protein USE1, humanhuman

Predictions only

Length 259 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USE1Q9NZ43 U6.58-201ENST00000613107 107 ntBASIC-3.13□□□□□ -2.91
USE1Q9NZ43 MIR4679-2-201ENST00000578358 77 ntBASIC-3.14□□□□□ -2.91
USE1Q9NZ43 MIR4777-201ENST00000583710 86 ntBASIC-3.14□□□□□ -2.91
USE1Q9NZ43 Y_RNA.272-201ENST00000364696 102 ntBASIC-3.15□□□□□ -2.91
USE1Q9NZ43 MIR4796-201ENST00000580742 81 ntBASIC-3.15□□□□□ -2.91
USE1Q9NZ43 AC072026.1-201ENST00000605023 201 ntBASIC-3.15□□□□□ -2.91
USE1Q9NZ43 U7.2-201ENST00000607576 63 ntBASIC-3.15□□□□□ -2.91
USE1Q9NZ43 Y_RNA.778-201ENST00000620203 90 ntBASIC-3.15□□□□□ -2.91
USE1Q9NZ43 Y_RNA.11-201ENST00000362375 109 ntBASIC-3.16□□□□□ -2.92
USE1Q9NZ43 Y_RNA.71-201ENST00000362892 104 ntBASIC-3.16□□□□□ -2.92
USE1Q9NZ43 RNU6-656P-201ENST00000516785 107 ntBASIC-3.16□□□□□ -2.92
USE1Q9NZ43 RNU6-111P-201ENST00000517179 105 ntBASIC-3.16□□□□□ -2.92
USE1Q9NZ43 SNORA81.3-201ENST00000517283 198 ntBASIC-3.16□□□□□ -2.92
USE1Q9NZ43 Y_RNA.420-201ENST00000384043 110 ntBASIC-3.17□□□□□ -2.92
USE1Q9NZ43 MIR3139-201ENST00000579145 76 ntBASIC-3.17□□□□□ -2.92
USE1Q9NZ43 Y_RNA.564-201ENST00000384708 106 ntBASIC-3.18□□□□□ -2.92
USE1Q9NZ43 MIR3128-201ENST00000581957 66 ntBASIC-3.18□□□□□ -2.92
USE1Q9NZ43 Y_RNA.240-201ENST00000364469 95 ntBASIC-3.19□□□□□ -2.92
USE1Q9NZ43 MIR548F4-201ENST00000408515 105 ntBASIC-3.19□□□□□ -2.92
USE1Q9NZ43 RNU6-795P-201ENST00000516323 103 ntBASIC-3.19□□□□□ -2.92
USE1Q9NZ43 Y_RNA.720-201ENST00000517166 92 ntBASIC-3.2□□□□□ -2.92
USE1Q9NZ43 TRAJ37-201ENST00000612375 65 ntAPPRIS P1 BASIC-3.2□□□□□ -2.92
USE1Q9NZ43 Y_RNA.350-201ENST00000365409 98 ntBASIC-3.21□□□□□ -2.92
USE1Q9NZ43 MIR548C-201ENST00000384815 97 ntBASIC-3.21□□□□□ -2.92
USE1Q9NZ43 AL450471.1-201ENST00000447509 127 ntBASIC-3.21□□□□□ -2.92
USE1Q9NZ43 MIR548A3-201ENST00000385297 97 ntBASIC-3.22□□□□□ -2.92
USE1Q9NZ43 MIR5009-201ENST00000578736 100 ntBASIC-3.22□□□□□ -2.92
USE1Q9NZ43 MIR466-201ENST00000580653 84 ntBASIC-3.22□□□□□ -2.92
USE1Q9NZ43 AC012531.4-201ENST00000616509 177 ntBASIC-3.22□□□□□ -2.92
USE1Q9NZ43 ST7-OT3_1.1-201ENST00000619607 74 ntBASIC-3.22□□□□□ -2.92
USE1Q9NZ43 SNORD58A-201ENST00000383875 65 ntBASIC-3.23□□□□□ -2.93
USE1Q9NZ43 SNORD19B.1-201ENST00000630615 80 ntBASIC-3.23□□□□□ -2.93
USE1Q9NZ43 Y_RNA.74-201ENST00000362911 99 ntBASIC-3.24□□□□□ -2.93
USE1Q9NZ43 RNU6-861P-201ENST00000516745 106 ntBASIC-3.24□□□□□ -2.93
USE1Q9NZ43 VTRNA2-1-201ENST00000602301 127 ntBASIC-3.24□□□□□ -2.93
USE1Q9NZ43 Y_RNA.47-201ENST00000362697 108 ntBASIC-3.25□□□□□ -2.93
USE1Q9NZ43 RNU6-340P-201ENST00000364005 107 ntBASIC-3.25□□□□□ -2.93
USE1Q9NZ43 MT-TM-201ENST00000387377 68 ntBASIC-3.25□□□□□ -2.93
USE1Q9NZ43 RNU6-1267P-201ENST00000410747 107 ntBASIC-3.25□□□□□ -2.93
USE1Q9NZ43 MIR429-201ENST00000362106 83 ntBASIC-3.26□□□□□ -2.93
USE1Q9NZ43 RNU6-681P-201ENST00000364012 104 ntBASIC-3.26□□□□□ -2.93
USE1Q9NZ43 RNU6-598P-201ENST00000364017 105 ntBASIC-3.26□□□□□ -2.93
USE1Q9NZ43 Y_RNA.680-201ENST00000516441 93 ntBASIC-3.26□□□□□ -2.93
USE1Q9NZ43 Y_RNA.705-201ENST00000516862 110 ntBASIC-3.26□□□□□ -2.93
USE1Q9NZ43 Y_RNA.53-201ENST00000362765 102 ntBASIC-3.27□□□□□ -2.93
USE1Q9NZ43 Y_RNA.109-201ENST00000363215 102 ntBASIC-3.27□□□□□ -2.93
USE1Q9NZ43 SNORA20.1-201ENST00000364790 130 ntBASIC-3.27□□□□□ -2.93
USE1Q9NZ43 RNU6-972P-201ENST00000391208 107 ntBASIC-3.27□□□□□ -2.93
USE1Q9NZ43 Y_RNA.630-201ENST00000411370 108 ntBASIC-3.27□□□□□ -2.93
USE1Q9NZ43 AL035461.1-201ENST00000421490 332 ntBASIC-3.27□□□□□ -2.93
USE1Q9NZ43 MIR548X2-201ENST00000579776 100 ntBASIC-3.27□□□□□ -2.93
USE1Q9NZ43 Y_RNA.282-201ENST00000364793 102 ntBASIC-3.28□□□□□ -2.93
USE1Q9NZ43 RNU6-1227P-201ENST00000383981 107 ntBASIC-3.28□□□□□ -2.93
USE1Q9NZ43 RNY3P14-201ENST00000384309 102 ntBASIC-3.28□□□□□ -2.93
USE1Q9NZ43 RNU6-1111P-201ENST00000391118 107 ntBASIC-3.28□□□□□ -2.93
USE1Q9NZ43 MIR1236-201ENST00000408340 102 ntBASIC-3.28□□□□□ -2.93
USE1Q9NZ43 RNU6-1023P-201ENST00000516137 106 ntBASIC-3.28□□□□□ -2.93
USE1Q9NZ43 MIR4748-201ENST00000578076 82 ntBASIC-3.28□□□□□ -2.93
USE1Q9NZ43 RNA5SP93-201ENST00000362525 114 ntBASIC-3.29□□□□□ -2.94
USE1Q9NZ43 MIR3144-201ENST00000579460 79 ntBASIC-3.29□□□□□ -2.94
USE1Q9NZ43 RNU6-766P-201ENST00000362478 107 ntBASIC-3.3□□□□□ -2.94
USE1Q9NZ43 Y_RNA.501-201ENST00000384467 103 ntBASIC-3.3□□□□□ -2.94
USE1Q9NZ43 Y_RNA.662-201ENST00000516028 97 ntBASIC-3.3□□□□□ -2.94
USE1Q9NZ43 MIR3170-201ENST00000582699 77 ntBASIC-3.3□□□□□ -2.94
USE1Q9NZ43 Y_RNA.149-201ENST00000363558 117 ntBASIC-3.31□□□□□ -2.94
USE1Q9NZ43 Y_RNA.204-201ENST00000364112 102 ntBASIC-3.31□□□□□ -2.94
USE1Q9NZ43 RNU6-645P-201ENST00000364649 106 ntBASIC-3.31□□□□□ -2.94
USE1Q9NZ43 RNU6-887P-201ENST00000410660 100 ntBASIC-3.31□□□□□ -2.94
USE1Q9NZ43 MIR548W-201ENST00000581970 74 ntBASIC-3.31□□□□□ -2.94
USE1Q9NZ43 ST7-OT3_3.1-201ENST00000611709 115 ntBASIC-3.31□□□□□ -2.94
USE1Q9NZ43 RNU6-682P-201ENST00000363843 106 ntBASIC-3.32□□□□□ -2.94
USE1Q9NZ43 Y_RNA.535-201ENST00000384612 99 ntBASIC-3.32□□□□□ -2.94
USE1Q9NZ43 Y_RNA.609-201ENST00000410669 89 ntBASIC-3.32□□□□□ -2.94
USE1Q9NZ43 snoU13.10-201ENST00000459301 103 ntBASIC-3.32□□□□□ -2.94
USE1Q9NZ43 TARS-215ENST00000626210 201 ntTSL 5 BASIC-3.32□□□□□ -2.94
USE1Q9NZ43 SNORD115-31-201ENST00000365318 82 ntBASIC-3.33□□□□□ -2.94
USE1Q9NZ43 SNORD116-18-201ENST00000383961 92 ntBASIC-3.33□□□□□ -2.94
USE1Q9NZ43 Y_RNA.459-201ENST00000384251 102 ntBASIC-3.33□□□□□ -2.94
USE1Q9NZ43 MTCYBP6-201ENST00000441810 138 ntBASIC-3.33□□□□□ -2.94
USE1Q9NZ43 Y_RNA.668-201ENST00000516233 93 ntBASIC-3.33□□□□□ -2.94
USE1Q9NZ43 AL117187.1-201ENST00000555482 181 ntBASIC-3.33□□□□□ -2.94
USE1Q9NZ43 RNU6-772P-201ENST00000516042 105 ntBASIC-3.35□□□□□ -2.95
USE1Q9NZ43 RNU7-174P-201ENST00000516248 59 ntBASIC-3.35□□□□□ -2.95
USE1Q9NZ43 Y_RNA.699-201ENST00000516803 93 ntBASIC-3.35□□□□□ -2.95
USE1Q9NZ43 Y_RNA.701-201ENST00000516812 110 ntBASIC-3.35□□□□□ -2.95
USE1Q9NZ43 hsa-mir-4773-1.1-201ENST00000585225 78 ntBASIC-3.35□□□□□ -2.95
USE1Q9NZ43 U2.18-201ENST00000622185 84 ntBASIC-3.35□□□□□ -2.95
USE1Q9NZ43 AL157777.2-201ENST00000258070 137 ntBASIC-3.36□□□□□ -2.95
USE1Q9NZ43 Y_RNA.325-201ENST00000365171 122 ntBASIC-3.36□□□□□ -2.95
USE1Q9NZ43 RNU6-587P-201ENST00000391282 106 ntBASIC-3.36□□□□□ -2.95
USE1Q9NZ43 Y_RNA.649-201ENST00000459077 103 ntBASIC-3.36□□□□□ -2.95
USE1Q9NZ43 RNU7-153P-201ENST00000516455 62 ntBASIC-3.36□□□□□ -2.95
USE1Q9NZ43 AC013734.1-201ENST00000619329 111 ntBASIC-3.36□□□□□ -2.95
USE1Q9NZ43 Y_RNA.421-201ENST00000384052 101 ntBASIC-3.37□□□□□ -2.95
USE1Q9NZ43 Y_RNA.422-201ENST00000384054 114 ntBASIC-3.37□□□□□ -2.95
USE1Q9NZ43 Y_RNA.580-201ENST00000391004 95 ntBASIC-3.37□□□□□ -2.95
USE1Q9NZ43 FTX_4.1-201ENST00000616291 147 ntBASIC-3.37□□□□□ -2.95
USE1Q9NZ43 SNORD116-10-201ENST00000363791 102 ntBASIC-3.38□□□□□ -2.95
USE1Q9NZ43 Y_RNA.297-201ENST00000364950 91 ntBASIC-3.38□□□□□ -2.95
USE1Q9NZ43 RNU6-1089P-201ENST00000516473 104 ntBASIC-3.38□□□□□ -2.95
Retrieved 100 of 98,524 protein–RNA pairs in 231.4 ms