Protein–RNA interactions for Protein: Q9H2Z4

NKX2-4, Homeobox protein Nkx-2.4, humanhuman

Predictions only

Length 354 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX2-4Q9H2Z4 MIR4315-2-201ENST00000640925 73 ntBASIC0.35□□□□□ -2.35
NKX2-4Q9H2Z4 SNORA15B-2-201ENST00000384058 135 ntBASIC0.34□□□□□ -2.36
NKX2-4Q9H2Z4 RNU6-895P-201ENST00000384125 103 ntBASIC0.34□□□□□ -2.36
NKX2-4Q9H2Z4 SNORA15B-1-201ENST00000384334 135 ntBASIC0.34□□□□□ -2.36
NKX2-4Q9H2Z4 RNU6-523P-201ENST00000516304 54 ntBASIC0.34□□□□□ -2.36
NKX2-4Q9H2Z4 RNU6-175P-201ENST00000516896 107 ntBASIC0.34□□□□□ -2.36
NKX2-4Q9H2Z4 AL627230.5-201ENST00000619807 58 ntBASIC0.34□□□□□ -2.36
NKX2-4Q9H2Z4 MIR6739-201ENST00000622461 75 ntBASIC0.34□□□□□ -2.36
NKX2-4Q9H2Z4 RNU6-881P-201ENST00000516813 102 ntBASIC0.33□□□□□ -2.36
NKX2-4Q9H2Z4 RN7SL660P-201ENST00000614852 299 ntBASIC0.33□□□□□ -2.36
NKX2-4Q9H2Z4 SYCP2-202ENST00000371001 5479 ntAPPRIS P2 TSL 1 (best) BASIC0.32□□□□□ -2.36
NKX2-4Q9H2Z4 RNU6-634P-201ENST00000459134 106 ntBASIC0.32□□□□□ -2.36
NKX2-4Q9H2Z4 SNORD113.1-201ENST00000363280 73 ntBASIC0.31□□□□□ -2.36
NKX2-4Q9H2Z4 RNU6-1036P-201ENST00000383959 104 ntBASIC0.31□□□□□ -2.36
NKX2-4Q9H2Z4 MIR521-2-201ENST00000384818 87 ntBASIC0.31□□□□□ -2.36
NKX2-4Q9H2Z4 RNU6ATAC11P-201ENST00000408541 125 ntBASIC0.31□□□□□ -2.36
NKX2-4Q9H2Z4 MIR5589-201ENST00000579442 60 ntBASIC0.31□□□□□ -2.36
NKX2-4Q9H2Z4 RNU6-645P-201ENST00000364649 106 ntBASIC0.3□□□□□ -2.36
NKX2-4Q9H2Z4 SNORD115-31-201ENST00000365318 82 ntBASIC0.3□□□□□ -2.36
NKX2-4Q9H2Z4 RNA5SP299-201ENST00000391203 116 ntBASIC0.3□□□□□ -2.36
NKX2-4Q9H2Z4 Y_RNA.633-201ENST00000459107 95 ntBASIC0.3□□□□□ -2.36
NKX2-4Q9H2Z4 RNU6-982P-201ENST00000516216 102 ntBASIC0.3□□□□□ -2.36
NKX2-4Q9H2Z4 MIR4802-201ENST00000581881 80 ntBASIC0.3□□□□□ -2.36
NKX2-4Q9H2Z4 MIR610-201ENST00000385139 96 ntBASIC0.29□□□□□ -2.36
NKX2-4Q9H2Z4 MIR892B-201ENST00000401279 77 ntBASIC0.29□□□□□ -2.36
NKX2-4Q9H2Z4 MTND4LP1-201ENST00000446263 157 ntBASIC0.29□□□□□ -2.36
NKX2-4Q9H2Z4 HOTAIR_3.1-201ENST00000611352 97 ntBASIC0.29□□□□□ -2.36
NKX2-4Q9H2Z4 U6.96-201ENST00000636425 70 ntBASIC0.29□□□□□ -2.36
NKX2-4Q9H2Z4 MIR5190-201ENST00000581537 80 ntBASIC0.28□□□□□ -2.36
NKX2-4Q9H2Z4 RNU6ATAC22P-201ENST00000516794 89 ntBASIC0.27□□□□□ -2.37
NKX2-4Q9H2Z4 RNU6-1216P-201ENST00000362590 107 ntBASIC0.26□□□□□ -2.37
NKX2-4Q9H2Z4 SNORA33.1-201ENST00000364957 130 ntBASIC0.26□□□□□ -2.37
NKX2-4Q9H2Z4 MIR106A-201ENST00000384870 81 ntBASIC0.26□□□□□ -2.37
NKX2-4Q9H2Z4 RNU6-656P-201ENST00000516785 107 ntBASIC0.26□□□□□ -2.37
NKX2-4Q9H2Z4 MIR6514-201ENST00000622549 70 ntBASIC0.26□□□□□ -2.37
NKX2-4Q9H2Z4 SNORA49-201ENST00000386157 136 ntBASIC0.25□□□□□ -2.37
NKX2-4Q9H2Z4 AC104408.1-201ENST00000605241 170 ntBASIC0.25□□□□□ -2.37
NKX2-4Q9H2Z4 SNORD30.1-201ENST00000391309 70 ntBASIC0.24□□□□□ -2.37
NKX2-4Q9H2Z4 RNA5SP163-201ENST00000410304 99 ntBASIC0.24□□□□□ -2.37
NKX2-4Q9H2Z4 SNORD115-25-201ENST00000362619 82 ntBASIC0.23□□□□□ -2.37
NKX2-4Q9H2Z4 RNA5SP98-201ENST00000363158 137 ntBASIC0.23□□□□□ -2.37
NKX2-4Q9H2Z4 RNA5SP214-201ENST00000363378 118 ntBASIC0.23□□□□□ -2.37
NKX2-4Q9H2Z4 SNORA42.1-201ENST00000363515 137 ntBASIC0.23□□□□□ -2.37
NKX2-4Q9H2Z4 RNU6-668P-201ENST00000364180 107 ntBASIC0.23□□□□□ -2.37
NKX2-4Q9H2Z4 RNU6-540P-201ENST00000384622 101 ntBASIC0.23□□□□□ -2.37
NKX2-4Q9H2Z4 MIR593-201ENST00000384856 100 ntBASIC0.23□□□□□ -2.37
NKX2-4Q9H2Z4 RNU6-663P-201ENST00000391105 106 ntBASIC0.23□□□□□ -2.37
NKX2-4Q9H2Z4 MIR4743-201ENST00000584576 69 ntBASIC0.23□□□□□ -2.37
NKX2-4Q9H2Z4 snoU13.19-201ENST00000459148 104 ntBASIC0.22□□□□□ -2.37
NKX2-4Q9H2Z4 CR383656.4-201ENST00000546909 122 ntBASIC0.22□□□□□ -2.37
NKX2-4Q9H2Z4 RNU6-649P-201ENST00000384463 107 ntBASIC0.21□□□□□ -2.38
NKX2-4Q9H2Z4 MIR548H2-201ENST00000408874 88 ntBASIC0.21□□□□□ -2.38
NKX2-4Q9H2Z4 Y_RNA.185-201ENST00000363894 100 ntBASIC0.2□□□□□ -2.38
NKX2-4Q9H2Z4 AP000676.1-201ENST00000533307 52 ntBASIC0.2□□□□□ -2.38
NKX2-4Q9H2Z4 RNU6-30P-201ENST00000384561 107 ntBASIC0.19□□□□□ -2.38
NKX2-4Q9H2Z4 MIR548C-201ENST00000384815 97 ntBASIC0.19□□□□□ -2.38
NKX2-4Q9H2Z4 MIR145-201ENST00000384967 88 ntBASIC0.19□□□□□ -2.38
NKX2-4Q9H2Z4 RNU6-180P-201ENST00000516697 61 ntBASIC0.19□□□□□ -2.38
NKX2-4Q9H2Z4 MIR5093-201ENST00000583199 100 ntBASIC0.19□□□□□ -2.38
NKX2-4Q9H2Z4 MIR6773-201ENST00000612812 74 ntBASIC0.19□□□□□ -2.38
NKX2-4Q9H2Z4 MIR148A-201ENST00000362215 68 ntBASIC0.17□□□□□ -2.38
NKX2-4Q9H2Z4 SNORD116-24-201ENST00000384549 92 ntBASIC0.17□□□□□ -2.38
NKX2-4Q9H2Z4 RNU6-539P-201ENST00000516665 103 ntBASIC0.17□□□□□ -2.38
NKX2-4Q9H2Z4 SNORD114-9-201ENST00000364370 72 ntBASIC0.16□□□□□ -2.38
NKX2-4Q9H2Z4 MIR1295A-201ENST00000408463 79 ntBASIC0.16□□□□□ -2.38
NKX2-4Q9H2Z4 RNU7-159P-201ENST00000459284 62 ntBASIC0.16□□□□□ -2.38
NKX2-4Q9H2Z4 AC114801.3-201ENST00000510231 177 ntBASIC0.16□□□□□ -2.38
NKX2-4Q9H2Z4 RNU6-1089P-201ENST00000516473 104 ntBASIC0.16□□□□□ -2.38
NKX2-4Q9H2Z4 CYP3A54P-201ENST00000566950 75 ntBASIC0.16□□□□□ -2.38
NKX2-4Q9H2Z4 RNU6-502P-201ENST00000362419 108 ntBASIC0.15□□□□□ -2.39
NKX2-4Q9H2Z4 SNORD114-5-201ENST00000362928 70 ntBASIC0.15□□□□□ -2.39
NKX2-4Q9H2Z4 RNU6-337P-201ENST00000391243 106 ntBASIC0.14□□□□□ -2.39
NKX2-4Q9H2Z4 AC090617.8-201ENST00000623339 167 ntBASIC0.14□□□□□ -2.39
NKX2-4Q9H2Z4 Y_RNA.443-201ENST00000384135 111 ntBASIC0.13□□□□□ -2.39
NKX2-4Q9H2Z4 RNU6-630P-201ENST00000391258 106 ntBASIC0.13□□□□□ -2.39
NKX2-4Q9H2Z4 RNA5SP25-201ENST00000410815 110 ntBASIC0.13□□□□□ -2.39
NKX2-4Q9H2Z4 Z95118.1-201ENST00000421372 247 ntBASIC0.13□□□□□ -2.39
NKX2-4Q9H2Z4 RNU7-165P-201ENST00000458864 60 ntBASIC0.13□□□□□ -2.39
NKX2-4Q9H2Z4 MIR4768-201ENST00000585270 74 ntBASIC0.13□□□□□ -2.39
NKX2-4Q9H2Z4 MIRLET7B-201ENST00000385140 83 ntBASIC0.12□□□□□ -2.39
NKX2-4Q9H2Z4 U6.111-201ENST00000636093 83 ntBASIC0.12□□□□□ -2.39
NKX2-4Q9H2Z4 MIR371B-201ENST00000638082 66 ntBASIC0.12□□□□□ -2.39
NKX2-4Q9H2Z4 RNA5SP215-201ENST00000363440 122 ntBASIC0.11□□□□□ -2.39
NKX2-4Q9H2Z4 MIR1255B2-201ENST00000408618 67 ntBASIC0.11□□□□□ -2.39
NKX2-4Q9H2Z4 AC008883.1-201ENST00000506562 193 ntTSL 3 BASIC0.11□□□□□ -2.39
NKX2-4Q9H2Z4 U2.7-201ENST00000619197 100 ntBASIC0.11□□□□□ -2.39
NKX2-4Q9H2Z4 RNU6-758P-201ENST00000516292 89 ntBASIC0.1□□□□□ -2.39
NKX2-4Q9H2Z4 SNORA25.4-201ENST00000363666 124 ntBASIC0.09□□□□□ -2.4
NKX2-4Q9H2Z4 RNA5SP368-201ENST00000364298 116 ntBASIC0.09□□□□□ -2.4
NKX2-4Q9H2Z4 SNORD114-31-201ENST00000363219 75 ntBASIC0.08□□□□□ -2.4
NKX2-4Q9H2Z4 AL021921.1-201ENST00000442774 93 ntBASIC0.08□□□□□ -2.4
NKX2-4Q9H2Z4 MIR6507-201ENST00000613630 70 ntBASIC0.08□□□□□ -2.4
NKX2-4Q9H2Z4 SNORD114-16-201ENST00000363044 70 ntBASIC0.07□□□□□ -2.4
NKX2-4Q9H2Z4 RNU6-302P-201ENST00000365249 107 ntBASIC0.07□□□□□ -2.4
NKX2-4Q9H2Z4 RNU6-455P-201ENST00000384681 107 ntBASIC0.07□□□□□ -2.4
NKX2-4Q9H2Z4 MIR517B-201ENST00000385102 67 ntBASIC0.07□□□□□ -2.4
NKX2-4Q9H2Z4 RNU6-518P-201ENST00000516056 96 ntBASIC0.07□□□□□ -2.4
NKX2-4Q9H2Z4 IGLVI-20-201ENST00000519296 130 ntBASIC0.07□□□□□ -2.4
NKX2-4Q9H2Z4 MIR548V-201ENST00000584165 80 ntBASIC0.07□□□□□ -2.4
NKX2-4Q9H2Z4 snoR1.1-201ENST00000628177 80 ntBASIC0.07□□□□□ -2.4
Retrieved 100 of 98,524 protein–RNA pairs in 171.3 ms