Protein–RNA interactions for Protein: Q9H1J1

UPF3A, Regulator of nonsense transcripts 3A, humanhuman

Known RBP Predictions only

Length 476 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3AQ9H1J1 SNORD2-201ENST00000459163 69 ntBASIC-0.2□□□□□ -2.44
UPF3AQ9H1J1 RNU7-55P-201ENST00000459426 62 ntBASIC-0.2□□□□□ -2.44
UPF3AQ9H1J1 RNU6-752P-201ENST00000516376 102 ntBASIC-0.2□□□□□ -2.44
UPF3AQ9H1J1 MIR4645-201ENST00000583158 77 ntBASIC-0.2□□□□□ -2.44
UPF3AQ9H1J1 AL590491.3-201ENST00000610731 82 ntBASIC-0.2□□□□□ -2.44
UPF3AQ9H1J1 SNORD114-12-201ENST00000365400 75 ntBASIC-0.21□□□□□ -2.44
UPF3AQ9H1J1 SNORD4A-201ENST00000459174 72 ntBASIC-0.21□□□□□ -2.44
UPF3AQ9H1J1 MIR1295B-201ENST00000636144 60 ntBASIC-0.21□□□□□ -2.44
UPF3AQ9H1J1 Y_RNA.43-201ENST00000362670 111 ntBASIC-0.22□□□□□ -2.44
UPF3AQ9H1J1 SNORD73B-201ENST00000364394 72 ntBASIC-0.22□□□□□ -2.44
UPF3AQ9H1J1 RNU6-900P-201ENST00000384498 102 ntBASIC-0.22□□□□□ -2.44
UPF3AQ9H1J1 RNU6-303P-201ENST00000517091 106 ntBASIC-0.22□□□□□ -2.44
UPF3AQ9H1J1 RNU6-681P-201ENST00000364012 104 ntBASIC-0.23□□□□□ -2.45
UPF3AQ9H1J1 SNORA33.1-201ENST00000364957 130 ntBASIC-0.23□□□□□ -2.45
UPF3AQ9H1J1 RNU6-1276P-201ENST00000365372 104 ntBASIC-0.23□□□□□ -2.45
UPF3AQ9H1J1 SNORD56B-201ENST00000384713 71 ntBASIC-0.23□□□□□ -2.45
UPF3AQ9H1J1 MIRLET7B-201ENST00000385140 83 ntBASIC-0.23□□□□□ -2.45
UPF3AQ9H1J1 SNORD114-15-201ENST00000364687 72 ntBASIC-0.24□□□□□ -2.45
UPF3AQ9H1J1 RNU6-1152P-201ENST00000384576 107 ntBASIC-0.24□□□□□ -2.45
UPF3AQ9H1J1 Y_RNA.94-201ENST00000363068 106 ntBASIC-0.25□□□□□ -2.45
UPF3AQ9H1J1 RNU6-820P-201ENST00000384273 107 ntBASIC-0.25□□□□□ -2.45
UPF3AQ9H1J1 MIR4666B-201ENST00000578142 81 ntBASIC-0.25□□□□□ -2.45
UPF3AQ9H1J1 MIR4484-201ENST00000582855 83 ntBASIC-0.25□□□□□ -2.45
UPF3AQ9H1J1 MIR4712-201ENST00000583750 82 ntBASIC-0.25□□□□□ -2.45
UPF3AQ9H1J1 MIR6739-201ENST00000622461 75 ntBASIC-0.25□□□□□ -2.45
UPF3AQ9H1J1 MIR101-1-201ENST00000362265 75 ntBASIC-0.26□□□□□ -2.45
UPF3AQ9H1J1 RNU6-315P-201ENST00000362666 107 ntBASIC-0.26□□□□□ -2.45
UPF3AQ9H1J1 SNORD114-28-201ENST00000363610 72 ntBASIC-0.26□□□□□ -2.45
UPF3AQ9H1J1 SNORD115-23-201ENST00000364461 82 ntBASIC-0.26□□□□□ -2.45
UPF3AQ9H1J1 Y_RNA.250-201ENST00000364542 110 ntBASIC-0.26□□□□□ -2.45
UPF3AQ9H1J1 RNA5SP300-201ENST00000391197 107 ntBASIC-0.26□□□□□ -2.45
UPF3AQ9H1J1 AC108676.2-201ENST00000605225 163 ntBASIC-0.26□□□□□ -2.45
UPF3AQ9H1J1 MIR3666-201ENST00000607845 111 ntBASIC-0.26□□□□□ -2.45
UPF3AQ9H1J1 U6.96-201ENST00000636425 70 ntBASIC-0.26□□□□□ -2.45
UPF3AQ9H1J1 Y_RNA.388-201ENST00000383919 113 ntBASIC-0.27□□□□□ -2.45
UPF3AQ9H1J1 uc_338.36-201ENST00000622331 158 ntBASIC-0.27□□□□□ -2.45
UPF3AQ9H1J1 MIR1245B-201ENST00000636115 69 ntBASIC-0.27□□□□□ -2.45
UPF3AQ9H1J1 Y_RNA.313-201ENST00000365095 103 ntBASIC-0.28□□□□□ -2.45
UPF3AQ9H1J1 SNORA15B-2-201ENST00000384058 135 ntBASIC-0.28□□□□□ -2.45
UPF3AQ9H1J1 SNORA8.1-201ENST00000384250 140 ntBASIC-0.28□□□□□ -2.45
UPF3AQ9H1J1 SNORA15B-1-201ENST00000384334 135 ntBASIC-0.28□□□□□ -2.45
UPF3AQ9H1J1 MIR521-2-201ENST00000384818 87 ntBASIC-0.28□□□□□ -2.45
UPF3AQ9H1J1 TRAJ28-201ENST00000390509 66 ntAPPRIS P1 BASIC-0.28□□□□□ -2.45
UPF3AQ9H1J1 MIR4280-201ENST00000582178 76 ntBASIC-0.28□□□□□ -2.45
UPF3AQ9H1J1 RNU6-973P-201ENST00000364690 107 ntBASIC-0.29□□□□□ -2.46
UPF3AQ9H1J1 RNU6-242P-201ENST00000384359 107 ntBASIC-0.29□□□□□ -2.46
UPF3AQ9H1J1 RNY4P29-201ENST00000410801 97 ntBASIC-0.29□□□□□ -2.46
UPF3AQ9H1J1 AC096531.1-201ENST00000419107 107 ntBASIC-0.29□□□□□ -2.46
UPF3AQ9H1J1 SCARNA18B-201ENST00000458806 135 ntBASIC-0.29□□□□□ -2.46
UPF3AQ9H1J1 MIR3675-201ENST00000583661 73 ntBASIC-0.29□□□□□ -2.46
UPF3AQ9H1J1 MIR5704-201ENST00000584029 77 ntBASIC-0.29□□□□□ -2.46
UPF3AQ9H1J1 AL391099.1-201ENST00000624635 187 ntBASIC-0.29□□□□□ -2.46
UPF3AQ9H1J1 SNORD114-11-201ENST00000363738 75 ntBASIC-0.3□□□□□ -2.46
UPF3AQ9H1J1 AC008883.1-201ENST00000506562 193 ntTSL 3 BASIC-0.3□□□□□ -2.46
UPF3AQ9H1J1 RNU6-656P-201ENST00000516785 107 ntBASIC-0.3□□□□□ -2.46
UPF3AQ9H1J1 MIR8064-201ENST00000612863 90 ntBASIC-0.3□□□□□ -2.46
UPF3AQ9H1J1 MIR664A-201ENST00000626086 82 ntBASIC-0.3□□□□□ -2.46
UPF3AQ9H1J1 MIR4679-1-201ENST00000637619 75 ntBASIC-0.3□□□□□ -2.46
UPF3AQ9H1J1 MIR4788-201ENST00000639104 80 ntBASIC-0.3□□□□□ -2.46
UPF3AQ9H1J1 RNA5SP451-201ENST00000410588 110 ntBASIC-0.31□□□□□ -2.46
UPF3AQ9H1J1 MIR8068-201ENST00000618032 68 ntBASIC-0.31□□□□□ -2.46
UPF3AQ9H1J1 Y_RNA.788-201ENST00000622394 112 ntBASIC-0.31□□□□□ -2.46
UPF3AQ9H1J1 SNORD95.1-201ENST00000364099 68 ntBASIC-0.32□□□□□ -2.46
UPF3AQ9H1J1 RNU6-573P-201ENST00000383938 106 ntBASIC-0.32□□□□□ -2.46
UPF3AQ9H1J1 RNU6-604P-201ENST00000390917 100 ntBASIC-0.32□□□□□ -2.46
UPF3AQ9H1J1 RNU6-1133P-201ENST00000410963 100 ntBASIC-0.32□□□□□ -2.46
UPF3AQ9H1J1 AL445193.1-201ENST00000441183 141 ntBASIC-0.32□□□□□ -2.46
UPF3AQ9H1J1 RNU6-881P-201ENST00000516813 102 ntBASIC-0.32□□□□□ -2.46
UPF3AQ9H1J1 RNA5SP66-201ENST00000517178 101 ntBASIC-0.32□□□□□ -2.46
UPF3AQ9H1J1 CYP3A54P-201ENST00000566950 75 ntBASIC-0.32□□□□□ -2.46
UPF3AQ9H1J1 MIR1297-201ENST00000637311 77 ntBASIC-0.32□□□□□ -2.46
UPF3AQ9H1J1 RNA5SP173-201ENST00000364857 136 ntBASIC-0.33□□□□□ -2.46
UPF3AQ9H1J1 RNU6-1162P-201ENST00000384443 104 ntBASIC-0.33□□□□□ -2.46
UPF3AQ9H1J1 RNU6-1184P-201ENST00000384588 108 ntBASIC-0.33□□□□□ -2.46
UPF3AQ9H1J1 AC114755.3-201ENST00000481111 251 ntBASIC-0.33□□□□□ -2.46
UPF3AQ9H1J1 RNU6-320P-201ENST00000516511 106 ntBASIC-0.33□□□□□ -2.46
UPF3AQ9H1J1 MIR4263-201ENST00000584745 83 ntBASIC-0.33□□□□□ -2.46
UPF3AQ9H1J1 SYCP2-202ENST00000371001 5479 ntAPPRIS P2 TSL 1 (best) BASIC-0.33□□□□□ -2.46
UPF3AQ9H1J1 RNU6-645P-201ENST00000364649 106 ntBASIC-0.34□□□□□ -2.46
UPF3AQ9H1J1 SNORA26.2-201ENST00000390922 122 ntBASIC-0.34□□□□□ -2.46
UPF3AQ9H1J1 MIR1255B2-201ENST00000408618 67 ntBASIC-0.34□□□□□ -2.46
UPF3AQ9H1J1 RPS29P8-201ENST00000445109 171 ntBASIC-0.34□□□□□ -2.46
UPF3AQ9H1J1 RNU6-982P-201ENST00000516216 102 ntBASIC-0.34□□□□□ -2.46
UPF3AQ9H1J1 RNU6-807P-201ENST00000516805 107 ntBASIC-0.34□□□□□ -2.46
UPF3AQ9H1J1 AL078612.1-201ENST00000533009 150 ntTSL 5 BASIC-0.34□□□□□ -2.46
UPF3AQ9H1J1 MIR4432-201ENST00000581823 84 ntBASIC-0.34□□□□□ -2.46
UPF3AQ9H1J1 RNU6-1094P-201ENST00000362416 104 ntBASIC-0.35□□□□□ -2.47
UPF3AQ9H1J1 SNORD45.1-201ENST00000363181 77 ntBASIC-0.35□□□□□ -2.47
UPF3AQ9H1J1 RNU6-901P-201ENST00000384593 106 ntBASIC-0.35□□□□□ -2.47
UPF3AQ9H1J1 RNA5SP67-201ENST00000516422 131 ntBASIC-0.35□□□□□ -2.47
UPF3AQ9H1J1 SNORD38.3-201ENST00000516599 73 ntBASIC-0.35□□□□□ -2.47
UPF3AQ9H1J1 RNA5SP169-201ENST00000517268 117 ntBASIC-0.35□□□□□ -2.47
UPF3AQ9H1J1 MIR4464-201ENST00000580818 92 ntBASIC-0.35□□□□□ -2.47
UPF3AQ9H1J1 MIR6851-201ENST00000617060 67 ntBASIC-0.35□□□□□ -2.47
UPF3AQ9H1J1 SNORD115-22-201ENST00000364456 82 ntBASIC-0.36□□□□□ -2.47
UPF3AQ9H1J1 MIR224-201ENST00000384889 81 ntBASIC-0.36□□□□□ -2.47
UPF3AQ9H1J1 Y_RNA.610-201ENST00000410681 103 ntBASIC-0.36□□□□□ -2.47
UPF3AQ9H1J1 Y_RNA.696-201ENST00000516725 107 ntBASIC-0.36□□□□□ -2.47
UPF3AQ9H1J1 RNU6-228P-201ENST00000362700 106 ntBASIC-0.37□□□□□ -2.47
UPF3AQ9H1J1 RNA5SP275-201ENST00000363936 118 ntBASIC-0.37□□□□□ -2.47
Retrieved 100 of 98,524 protein–RNA pairs in 184.1 ms