Protein–RNA interactions for Protein: Q8NDQ6

ZNF540, Zinc finger protein 540, humanhuman

Predictions only

Length 660 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540Q8NDQ6 RNU6-129P-201ENST00000391022 107 ntBASIC-0.29□□□□□ -2.46
ZNF540Q8NDQ6 Y_RNA.607-201ENST00000410597 98 ntBASIC-0.29□□□□□ -2.46
ZNF540Q8NDQ6 RNU7-171P-201ENST00000459581 62 ntBASIC-0.29□□□□□ -2.46
ZNF540Q8NDQ6 RNU6-303P-201ENST00000517091 106 ntBASIC-0.29□□□□□ -2.46
ZNF540Q8NDQ6 MIR6851-201ENST00000617060 67 ntBASIC-0.29□□□□□ -2.46
ZNF540Q8NDQ6 AL391099.1-201ENST00000624635 187 ntBASIC-0.29□□□□□ -2.46
ZNF540Q8NDQ6 RNU6-294P-201ENST00000364999 102 ntBASIC-0.3□□□□□ -2.46
ZNF540Q8NDQ6 Y_RNA.316-201ENST00000365118 111 ntBASIC-0.3□□□□□ -2.46
ZNF540Q8NDQ6 RNU6-787P-201ENST00000384032 107 ntBASIC-0.3□□□□□ -2.46
ZNF540Q8NDQ6 MIR521-2-201ENST00000384818 87 ntBASIC-0.3□□□□□ -2.46
ZNF540Q8NDQ6 AL445193.1-201ENST00000441183 141 ntBASIC-0.3□□□□□ -2.46
ZNF540Q8NDQ6 AC008883.1-201ENST00000506562 193 ntTSL 3 BASIC-0.3□□□□□ -2.46
ZNF540Q8NDQ6 MIR4464-201ENST00000580818 92 ntBASIC-0.3□□□□□ -2.46
ZNF540Q8NDQ6 MIR4432-201ENST00000581823 84 ntBASIC-0.3□□□□□ -2.46
ZNF540Q8NDQ6 MIR4636-201ENST00000582271 80 ntBASIC-0.3□□□□□ -2.46
ZNF540Q8NDQ6 MIR4263-201ENST00000584745 83 ntBASIC-0.3□□□□□ -2.46
ZNF540Q8NDQ6 MIR494-201ENST00000349529 81 ntBASIC-0.31□□□□□ -2.46
ZNF540Q8NDQ6 RNY1P1-201ENST00000364372 112 ntBASIC-0.31□□□□□ -2.46
ZNF540Q8NDQ6 SNORA15B-2-201ENST00000384058 135 ntBASIC-0.31□□□□□ -2.46
ZNF540Q8NDQ6 SNORA15B-1-201ENST00000384334 135 ntBASIC-0.31□□□□□ -2.46
ZNF540Q8NDQ6 MIR1265-201ENST00000408444 86 ntBASIC-0.31□□□□□ -2.46
ZNF540Q8NDQ6 AC022137.1-201ENST00000483735 151 ntBASIC-0.31□□□□□ -2.46
ZNF540Q8NDQ6 SNORD38.3-201ENST00000516599 73 ntBASIC-0.31□□□□□ -2.46
ZNF540Q8NDQ6 RNU6-656P-201ENST00000516785 107 ntBASIC-0.31□□□□□ -2.46
ZNF540Q8NDQ6 AC062037.1-201ENST00000605302 128 ntBASIC-0.31□□□□□ -2.46
ZNF540Q8NDQ6 U6.96-201ENST00000636425 70 ntBASIC-0.31□□□□□ -2.46
ZNF540Q8NDQ6 SYCP2-202ENST00000371001 5479 ntAPPRIS P2 TSL 1 (best) BASIC-0.32□□□□□ -2.46
ZNF540Q8NDQ6 RNU6-681P-201ENST00000364012 104 ntBASIC-0.32□□□□□ -2.46
ZNF540Q8NDQ6 SNORD14C-201ENST00000365382 88 ntBASIC-0.32□□□□□ -2.46
ZNF540Q8NDQ6 Y_RNA.391-201ENST00000383933 94 ntBASIC-0.32□□□□□ -2.46
ZNF540Q8NDQ6 MIR196A2-201ENST00000385189 110 ntBASIC-0.32□□□□□ -2.46
ZNF540Q8NDQ6 SNORD126-201ENST00000459475 77 ntBASIC-0.32□□□□□ -2.46
ZNF540Q8NDQ6 RNU6-320P-201ENST00000516511 106 ntBASIC-0.32□□□□□ -2.46
ZNF540Q8NDQ6 MIR4645-201ENST00000583158 77 ntBASIC-0.32□□□□□ -2.46
ZNF540Q8NDQ6 AC093726.3-201ENST00000637588 150 ntBASIC-0.32□□□□□ -2.46
ZNF540Q8NDQ6 RNU6-315P-201ENST00000362666 107 ntBASIC-0.33□□□□□ -2.46
ZNF540Q8NDQ6 Y_RNA.426-201ENST00000384068 113 ntBASIC-0.33□□□□□ -2.46
ZNF540Q8NDQ6 SNORA8.1-201ENST00000384250 140 ntBASIC-0.33□□□□□ -2.46
ZNF540Q8NDQ6 RNU6-881P-201ENST00000516813 102 ntBASIC-0.33□□□□□ -2.46
ZNF540Q8NDQ6 MIR4802-201ENST00000581881 80 ntBASIC-0.33□□□□□ -2.46
ZNF540Q8NDQ6 MIR4712-201ENST00000583750 82 ntBASIC-0.33□□□□□ -2.46
ZNF540Q8NDQ6 IGLL4P-201ENST00000614590 133 ntBASIC-0.33□□□□□ -2.46
ZNF540Q8NDQ6 Y_RNA.94-201ENST00000363068 106 ntBASIC-0.34□□□□□ -2.46
ZNF540Q8NDQ6 RNU6-901P-201ENST00000384593 106 ntBASIC-0.34□□□□□ -2.46
ZNF540Q8NDQ6 MIR1255B2-201ENST00000408618 67 ntBASIC-0.34□□□□□ -2.46
ZNF540Q8NDQ6 RNA5SP170-201ENST00000517150 101 ntBASIC-0.34□□□□□ -2.46
ZNF540Q8NDQ6 CYP3A54P-201ENST00000566950 75 ntBASIC-0.34□□□□□ -2.46
ZNF540Q8NDQ6 MIR4484-201ENST00000582855 83 ntBASIC-0.34□□□□□ -2.46
ZNF540Q8NDQ6 RNU6-1152P-201ENST00000384576 107 ntBASIC-0.35□□□□□ -2.47
ZNF540Q8NDQ6 MIR450A2-201ENST00000385022 100 ntBASIC-0.35□□□□□ -2.47
ZNF540Q8NDQ6 RNU6ATAC29P-201ENST00000408088 125 ntBASIC-0.35□□□□□ -2.47
ZNF540Q8NDQ6 Z95118.1-201ENST00000421372 247 ntBASIC-0.35□□□□□ -2.47
ZNF540Q8NDQ6 Y_RNA.698-201ENST00000516798 118 ntBASIC-0.35□□□□□ -2.47
ZNF540Q8NDQ6 MIR4666B-201ENST00000578142 81 ntBASIC-0.35□□□□□ -2.47
ZNF540Q8NDQ6 MIR548AG1-201ENST00000579932 66 ntBASIC-0.35□□□□□ -2.47
ZNF540Q8NDQ6 AL353803.5-201ENST00000599815 141 ntBASIC-0.35□□□□□ -2.47
ZNF540Q8NDQ6 MIR6854-201ENST00000614935 69 ntBASIC-0.35□□□□□ -2.47
ZNF540Q8NDQ6 MIR6086-201ENST00000638065 55 ntBASIC-0.35□□□□□ -2.47
ZNF540Q8NDQ6 RNA5SP275-201ENST00000363936 118 ntBASIC-0.36□□□□□ -2.47
ZNF540Q8NDQ6 Y_RNA.313-201ENST00000365095 103 ntBASIC-0.36□□□□□ -2.47
ZNF540Q8NDQ6 RNU6-1276P-201ENST00000365372 104 ntBASIC-0.36□□□□□ -2.47
ZNF540Q8NDQ6 RNU6-604P-201ENST00000390917 100 ntBASIC-0.36□□□□□ -2.47
ZNF540Q8NDQ6 RNU6-284P-201ENST00000411105 106 ntBASIC-0.36□□□□□ -2.47
ZNF540Q8NDQ6 SCARNA18B-201ENST00000458806 135 ntBASIC-0.36□□□□□ -2.47
ZNF540Q8NDQ6 MIR3675-201ENST00000583661 73 ntBASIC-0.36□□□□□ -2.47
ZNF540Q8NDQ6 AP001180.6-201ENST00000584918 159 ntBASIC-0.36□□□□□ -2.47
ZNF540Q8NDQ6 U2.7-201ENST00000619197 100 ntBASIC-0.36□□□□□ -2.47
ZNF540Q8NDQ6 MIR6888-201ENST00000621977 67 ntBASIC-0.36□□□□□ -2.47
ZNF540Q8NDQ6 Y_RNA.788-201ENST00000622394 112 ntBASIC-0.36□□□□□ -2.47
ZNF540Q8NDQ6 MIR664A-201ENST00000626086 82 ntBASIC-0.36□□□□□ -2.47
ZNF540Q8NDQ6 RNU6-645P-201ENST00000364649 106 ntBASIC-0.37□□□□□ -2.47
ZNF540Q8NDQ6 RNU6-982P-201ENST00000516216 102 ntBASIC-0.37□□□□□ -2.47
ZNF540Q8NDQ6 MIR4436A-201ENST00000585278 85 ntBASIC-0.37□□□□□ -2.47
ZNF540Q8NDQ6 MIR1245B-201ENST00000636115 69 ntBASIC-0.37□□□□□ -2.47
ZNF540Q8NDQ6 SNORD114-28-201ENST00000363610 72 ntBASIC-0.38□□□□□ -2.47
ZNF540Q8NDQ6 MIR519A2-201ENST00000384990 87 ntBASIC-0.38□□□□□ -2.47
ZNF540Q8NDQ6 RNU6-721P-201ENST00000410155 105 ntBASIC-0.38□□□□□ -2.47
ZNF540Q8NDQ6 AL445584.3-201ENST00000617173 78 ntBASIC-0.38□□□□□ -2.47
ZNF540Q8NDQ6 SNORD73B-201ENST00000364394 72 ntBASIC-0.39□□□□□ -2.47
ZNF540Q8NDQ6 SNORD115-22-201ENST00000364456 82 ntBASIC-0.39□□□□□ -2.47
ZNF540Q8NDQ6 SNORD22.1-201ENST00000516331 125 ntBASIC-0.39□□□□□ -2.47
ZNF540Q8NDQ6 MIR8064-201ENST00000612863 90 ntBASIC-0.39□□□□□ -2.47
ZNF540Q8NDQ6 snoR1.1-201ENST00000628177 80 ntBASIC-0.39□□□□□ -2.47
ZNF540Q8NDQ6 MIR1297-201ENST00000637311 77 ntBASIC-0.39□□□□□ -2.47
ZNF540Q8NDQ6 SNORD114-14-201ENST00000362723 75 ntBASIC-0.4□□□□□ -2.47
ZNF540Q8NDQ6 RNU6-1255P-201ENST00000363434 112 ntBASIC-0.4□□□□□ -2.47
ZNF540Q8NDQ6 RNU6-820P-201ENST00000384273 107 ntBASIC-0.4□□□□□ -2.47
ZNF540Q8NDQ6 RNU6-1250P-201ENST00000391218 107 ntBASIC-0.4□□□□□ -2.47
ZNF540Q8NDQ6 RNU7-154P-201ENST00000516194 62 ntBASIC-0.4□□□□□ -2.47
ZNF540Q8NDQ6 SNORD45.1-201ENST00000363181 77 ntBASIC-0.41□□□□□ -2.48
ZNF540Q8NDQ6 Y_RNA.189-201ENST00000363959 112 ntBASIC-0.41□□□□□ -2.48
ZNF540Q8NDQ6 Y_RNA.388-201ENST00000383919 113 ntBASIC-0.41□□□□□ -2.48
ZNF540Q8NDQ6 RNU6-518P-201ENST00000516056 96 ntBASIC-0.41□□□□□ -2.48
ZNF540Q8NDQ6 RNU6-758P-201ENST00000516292 89 ntBASIC-0.41□□□□□ -2.48
ZNF540Q8NDQ6 RNA5SP470-201ENST00000516463 106 ntBASIC-0.41□□□□□ -2.48
ZNF540Q8NDQ6 MIR4493-201ENST00000584016 73 ntBASIC-0.41□□□□□ -2.48
ZNF540Q8NDQ6 Y_RNA.43-201ENST00000362670 111 ntBASIC-0.42□□□□□ -2.48
ZNF540Q8NDQ6 SNORA62.4-201ENST00000365504 151 ntBASIC-0.42□□□□□ -2.48
ZNF540Q8NDQ6 MIR518B-201ENST00000385127 83 ntBASIC-0.42□□□□□ -2.48
ZNF540Q8NDQ6 RNU7-174P-201ENST00000516248 59 ntBASIC-0.42□□□□□ -2.48
Retrieved 100 of 98,524 protein–RNA pairs in 321.3 ms