Protein–RNA interactions for Protein: Q8IWP9

CCDC28A, Coiled-coil domain-containing protein 28A, humanhuman

Predictions only

Length 274 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28AQ8IWP9 SNORD56B-201ENST00000384713 71 ntBASIC-0.46□□□□□ -2.48
CCDC28AQ8IWP9 MIR3675-201ENST00000583661 73 ntBASIC-0.46□□□□□ -2.48
CCDC28AQ8IWP9 RNA5SP257-201ENST00000363023 116 ntBASIC-0.47□□□□□ -2.48
CCDC28AQ8IWP9 AL445193.1-201ENST00000441183 141 ntBASIC-0.47□□□□□ -2.48
CCDC28AQ8IWP9 uc_338.36-201ENST00000622331 158 ntBASIC-0.47□□□□□ -2.48
CCDC28AQ8IWP9 SNORD114-31-201ENST00000363219 75 ntBASIC-0.48□□□□□ -2.49
CCDC28AQ8IWP9 AC096531.1-201ENST00000419107 107 ntBASIC-0.48□□□□□ -2.49
CCDC28AQ8IWP9 RNU6-320P-201ENST00000516511 106 ntBASIC-0.48□□□□□ -2.49
CCDC28AQ8IWP9 IGLVI-20-201ENST00000519296 130 ntBASIC-0.48□□□□□ -2.49
CCDC28AQ8IWP9 G3BP1-214ENST00000627077 114 ntTSL 5 BASIC-0.48□□□□□ -2.49
CCDC28AQ8IWP9 AC093726.3-201ENST00000637588 150 ntBASIC-0.48□□□□□ -2.49
CCDC28AQ8IWP9 RNU6-1094P-201ENST00000362416 104 ntBASIC-0.49□□□□□ -2.49
CCDC28AQ8IWP9 RNU6-1255P-201ENST00000363434 112 ntBASIC-0.49□□□□□ -2.49
CCDC28AQ8IWP9 Y_RNA.219-201ENST00000364232 113 ntBASIC-0.49□□□□□ -2.49
CCDC28AQ8IWP9 Y_RNA.532-201ENST00000384590 113 ntBASIC-0.49□□□□□ -2.49
CCDC28AQ8IWP9 RNA5SP285-201ENST00000516619 119 ntBASIC-0.49□□□□□ -2.49
CCDC28AQ8IWP9 MIR4432-201ENST00000581823 84 ntBASIC-0.49□□□□□ -2.49
CCDC28AQ8IWP9 MIR1245B-201ENST00000636115 69 ntBASIC-0.49□□□□□ -2.49
CCDC28AQ8IWP9 Y_RNA.43-201ENST00000362670 111 ntBASIC-0.5□□□□□ -2.49
CCDC28AQ8IWP9 RNU6-330P-201ENST00000363015 107 ntBASIC-0.5□□□□□ -2.49
CCDC28AQ8IWP9 SNORD115-23-201ENST00000364461 82 ntBASIC-0.5□□□□□ -2.49
CCDC28AQ8IWP9 AC062037.1-201ENST00000605302 128 ntBASIC-0.5□□□□□ -2.49
CCDC28AQ8IWP9 Y_RNA.185-201ENST00000363894 100 ntBASIC-0.51□□□□□ -2.49
CCDC28AQ8IWP9 MIR4484-201ENST00000582855 83 ntBASIC-0.51□□□□□ -2.49
CCDC28AQ8IWP9 AC090617.8-201ENST00000623339 167 ntBASIC-0.51□□□□□ -2.49
CCDC28AQ8IWP9 Y_RNA.313-201ENST00000365095 103 ntBASIC-0.52□□□□□ -2.49
CCDC28AQ8IWP9 MIR4666B-201ENST00000578142 81 ntBASIC-0.52□□□□□ -2.49
CCDC28AQ8IWP9 MIR4712-201ENST00000583750 82 ntBASIC-0.52□□□□□ -2.49
CCDC28AQ8IWP9 SNORD114-11-201ENST00000363738 75 ntBASIC-0.53□□□□□ -2.49
CCDC28AQ8IWP9 SNORD14C-201ENST00000365382 88 ntBASIC-0.53□□□□□ -2.49
CCDC28AQ8IWP9 RNA5SP470-201ENST00000516463 106 ntBASIC-0.53□□□□□ -2.49
CCDC28AQ8IWP9 CYP3A54P-201ENST00000566950 75 ntBASIC-0.53□□□□□ -2.49
CCDC28AQ8IWP9 MIR4280-201ENST00000582178 76 ntBASIC-0.53□□□□□ -2.49
CCDC28AQ8IWP9 MIR4645-201ENST00000583158 77 ntBASIC-0.53□□□□□ -2.49
CCDC28AQ8IWP9 RNA5SP275-201ENST00000363936 118 ntBASIC-0.54□□□□□ -2.5
CCDC28AQ8IWP9 MIR6851-201ENST00000617060 67 ntBASIC-0.54□□□□□ -2.5
CCDC28AQ8IWP9 SNORD73B-201ENST00000364394 72 ntBASIC-0.55□□□□□ -2.5
CCDC28AQ8IWP9 RNU6-1152P-201ENST00000384576 107 ntBASIC-0.55□□□□□ -2.5
CCDC28AQ8IWP9 MIR1255B2-201ENST00000408618 67 ntBASIC-0.55□□□□□ -2.5
CCDC28AQ8IWP9 SNORD114-28-201ENST00000363610 72 ntBASIC-0.56□□□□□ -2.5
CCDC28AQ8IWP9 SNORD126-201ENST00000459475 77 ntBASIC-0.56□□□□□ -2.5
CCDC28AQ8IWP9 MIR6854-201ENST00000614935 69 ntBASIC-0.56□□□□□ -2.5
CCDC28AQ8IWP9 MIR6759-201ENST00000638110 65 ntBASIC-0.56□□□□□ -2.5
CCDC28AQ8IWP9 SNORD45.1-201ENST00000363181 77 ntBASIC-0.57□□□□□ -2.5
CCDC28AQ8IWP9 RNU6-1184P-201ENST00000384588 108 ntBASIC-0.57□□□□□ -2.5
CCDC28AQ8IWP9 TRAJ53-201ENST00000390485 66 ntAPPRIS P1 BASIC-0.57□□□□□ -2.5
CCDC28AQ8IWP9 RNU6-604P-201ENST00000390917 100 ntBASIC-0.57□□□□□ -2.5
CCDC28AQ8IWP9 RNU6-656P-201ENST00000516785 107 ntBASIC-0.57□□□□□ -2.5
CCDC28AQ8IWP9 MIR5704-201ENST00000584029 77 ntBASIC-0.57□□□□□ -2.5
CCDC28AQ8IWP9 RNU6-645P-201ENST00000364649 106 ntBASIC-0.58□□□□□ -2.5
CCDC28AQ8IWP9 SNORA62.4-201ENST00000365504 151 ntBASIC-0.58□□□□□ -2.5
CCDC28AQ8IWP9 Y_RNA.391-201ENST00000383933 94 ntBASIC-0.58□□□□□ -2.5
CCDC28AQ8IWP9 hsa-mir-3130-1.1-201ENST00000579223 75 ntBASIC-0.58□□□□□ -2.5
CCDC28AQ8IWP9 MIR8064-201ENST00000612863 90 ntBASIC-0.58□□□□□ -2.5
CCDC28AQ8IWP9 MIR204-201ENST00000385200 110 ntBASIC-0.59□□□□□ -2.5
CCDC28AQ8IWP9 AL353803.5-201ENST00000599815 141 ntBASIC-0.59□□□□□ -2.5
CCDC28AQ8IWP9 SNORA26.2-201ENST00000390922 122 ntBASIC-0.6□□□□□ -2.51
CCDC28AQ8IWP9 SNORA13-201ENST00000458790 133 ntBASIC-0.6□□□□□ -2.51
CCDC28AQ8IWP9 SNORD38.3-201ENST00000516599 73 ntBASIC-0.6□□□□□ -2.51
CCDC28AQ8IWP9 Y_RNA.94-201ENST00000363068 106 ntBASIC-0.61□□□□□ -2.51
CCDC28AQ8IWP9 Y_RNA.696-201ENST00000516725 107 ntBASIC-0.61□□□□□ -2.51
CCDC28AQ8IWP9 AL078612.1-201ENST00000533009 150 ntTSL 5 BASIC-0.61□□□□□ -2.51
CCDC28AQ8IWP9 MIR8053-201ENST00000613344 75 ntBASIC-0.61□□□□□ -2.51
CCDC28AQ8IWP9 RNU6-787P-201ENST00000384032 107 ntBASIC-0.62□□□□□ -2.51
CCDC28AQ8IWP9 MIR196A2-201ENST00000385189 110 ntBASIC-0.62□□□□□ -2.51
CCDC28AQ8IWP9 RNY4P29-201ENST00000410801 97 ntBASIC-0.62□□□□□ -2.51
CCDC28AQ8IWP9 AL021921.1-201ENST00000442774 93 ntBASIC-0.63□□□□□ -2.51
CCDC28AQ8IWP9 AC114755.3-201ENST00000481111 251 ntBASIC-0.63□□□□□ -2.51
CCDC28AQ8IWP9 RNU7-154P-201ENST00000516194 62 ntBASIC-0.63□□□□□ -2.51
CCDC28AQ8IWP9 MIR3202-2-201ENST00000635980 79 ntBASIC-0.63□□□□□ -2.51
CCDC28AQ8IWP9 RNU6-284P-201ENST00000411105 106 ntBASIC-0.64□□□□□ -2.51
CCDC28AQ8IWP9 SCARNA18B-201ENST00000458806 135 ntBASIC-0.64□□□□□ -2.51
CCDC28AQ8IWP9 RNU6-518P-201ENST00000516056 96 ntBASIC-0.64□□□□□ -2.51
CCDC28AQ8IWP9 AP001180.6-201ENST00000584918 159 ntBASIC-0.64□□□□□ -2.51
CCDC28AQ8IWP9 MIR518B-201ENST00000385127 83 ntBASIC-0.65□□□□□ -2.51
CCDC28AQ8IWP9 Y_RNA.681-201ENST00000516445 113 ntBASIC-0.65□□□□□ -2.51
CCDC28AQ8IWP9 MIR8068-201ENST00000618032 68 ntBASIC-0.65□□□□□ -2.51
CCDC28AQ8IWP9 HOTAIRM1_3.1-201ENST00000619974 59 ntBASIC-0.65□□□□□ -2.51
CCDC28AQ8IWP9 RNU6ATAC29P-201ENST00000408088 125 ntBASIC-0.66□□□□□ -2.52
CCDC28AQ8IWP9 MIR1302-4-201ENST00000408701 150 ntBASIC-0.66□□□□□ -2.52
CCDC28AQ8IWP9 RNA5SP169-201ENST00000517268 117 ntBASIC-0.66□□□□□ -2.52
CCDC28AQ8IWP9 SNORD74.6-201ENST00000364796 70 ntBASIC-0.67□□□□□ -2.52
CCDC28AQ8IWP9 AC021146.6-201ENST00000514659 117 ntBASIC-0.67□□□□□ -2.52
CCDC28AQ8IWP9 MIR548AZ-201ENST00000616567 95 ntBASIC-0.67□□□□□ -2.52
CCDC28AQ8IWP9 SNORD115-22-201ENST00000364456 82 ntBASIC-0.68□□□□□ -2.52
CCDC28AQ8IWP9 MIR519A2-201ENST00000384990 87 ntBASIC-0.68□□□□□ -2.52
CCDC28AQ8IWP9 MTND4LP1-201ENST00000446263 157 ntBASIC-0.68□□□□□ -2.52
CCDC28AQ8IWP9 RNU6-982P-201ENST00000516216 102 ntBASIC-0.68□□□□□ -2.52
CCDC28AQ8IWP9 MIR5589-201ENST00000579442 60 ntBASIC-0.68□□□□□ -2.52
CCDC28AQ8IWP9 MIR4802-201ENST00000581881 80 ntBASIC-0.68□□□□□ -2.52
CCDC28AQ8IWP9 U2.7-201ENST00000619197 100 ntBASIC-0.68□□□□□ -2.52
CCDC28AQ8IWP9 Y_RNA.30-201ENST00000362572 97 ntBASIC-0.69□□□□□ -2.52
CCDC28AQ8IWP9 RNA5SP173-201ENST00000364857 136 ntBASIC-0.69□□□□□ -2.52
CCDC28AQ8IWP9 SNORA32.3-201ENST00000384772 121 ntBASIC-0.69□□□□□ -2.52
CCDC28AQ8IWP9 MIR548C-201ENST00000384815 97 ntBASIC-0.69□□□□□ -2.52
CCDC28AQ8IWP9 RNU6-881P-201ENST00000516813 102 ntBASIC-0.69□□□□□ -2.52
CCDC28AQ8IWP9 MIR664A-201ENST00000626086 82 ntBASIC-0.69□□□□□ -2.52
CCDC28AQ8IWP9 Y_RNA.388-201ENST00000383919 113 ntBASIC-0.7□□□□□ -2.52
CCDC28AQ8IWP9 RNU6-70P-201ENST00000516438 60 ntBASIC-0.7□□□□□ -2.52
CCDC28AQ8IWP9 MIR101-1-201ENST00000362265 75 ntBASIC-0.71□□□□□ -2.52
Retrieved 100 of 98,524 protein–RNA pairs in 179.8 ms