Protein–RNA interactions for Protein: Q70EL4

USP43, Ubiquitin carboxyl-terminal hydrolase 43, humanhuman

Predictions only

Length 1,123 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP43Q70EL4 MIR936-201ENST00000401264 98 ntBASIC0.6□□□□□ -2.31
USP43Q70EL4 RNU6-231P-201ENST00000517122 103 ntBASIC0.6□□□□□ -2.31
USP43Q70EL4 SNORA40.16-201ENST00000517238 121 ntBASIC0.6□□□□□ -2.31
USP43Q70EL4 G3BP1-214ENST00000627077 114 ntTSL 5 BASIC0.6□□□□□ -2.31
USP43Q70EL4 RNA5SP347-201ENST00000362445 119 ntBASIC0.59□□□□□ -2.31
USP43Q70EL4 RNA5SP457-201ENST00000363657 124 ntBASIC0.59□□□□□ -2.31
USP43Q70EL4 RNA5SP517-201ENST00000364724 117 ntBASIC0.59□□□□□ -2.31
USP43Q70EL4 SNORD116-16-201ENST00000384533 92 ntBASIC0.59□□□□□ -2.31
USP43Q70EL4 AC069271.1-201ENST00000445577 156 ntBASIC0.59□□□□□ -2.31
USP43Q70EL4 AC243829.6-201ENST00000612652 106 ntBASIC0.59□□□□□ -2.31
USP43Q70EL4 MIR924-201ENST00000638017 53 ntBASIC0.59□□□□□ -2.31
USP43Q70EL4 RNU6-753P-201ENST00000363926 107 ntBASIC0.58□□□□□ -2.32
USP43Q70EL4 RNU6-35P-201ENST00000384530 107 ntBASIC0.58□□□□□ -2.32
USP43Q70EL4 TRGJP-201ENST00000390338 61 ntAPPRIS P1 BASIC0.58□□□□□ -2.32
USP43Q70EL4 MIR1255B2-201ENST00000408618 67 ntBASIC0.58□□□□□ -2.32
USP43Q70EL4 RNA5SP222-201ENST00000411039 105 ntBASIC0.58□□□□□ -2.32
USP43Q70EL4 AL162399.1-201ENST00000426090 130 ntTSL 3 BASIC0.58□□□□□ -2.32
USP43Q70EL4 RNU6-175P-201ENST00000516896 107 ntBASIC0.58□□□□□ -2.32
USP43Q70EL4 MIR5706-201ENST00000579841 80 ntBASIC0.58□□□□□ -2.32
USP43Q70EL4 MIR92A1-201ENST00000385233 78 ntBASIC0.57□□□□□ -2.32
USP43Q70EL4 AC244090.1-201ENST00000441884 93 ntBASIC0.57□□□□□ -2.32
USP43Q70EL4 AL021921.1-201ENST00000442774 93 ntBASIC0.57□□□□□ -2.32
USP43Q70EL4 RNU6-518P-201ENST00000516056 96 ntBASIC0.57□□□□□ -2.32
USP43Q70EL4 U6.96-201ENST00000636425 70 ntBASIC0.57□□□□□ -2.32
USP43Q70EL4 CALCRL-202ENST00000409998 5223 ntAPPRIS P1 TSL 5 BASIC0.57□□□□□ -2.32
USP43Q70EL4 Y_RNA.30-201ENST00000362572 97 ntBASIC0.56□□□□□ -2.32
USP43Q70EL4 SNORD118-201ENST00000363593 134 ntBASIC0.56□□□□□ -2.32
USP43Q70EL4 Y_RNA.379-201ENST00000365653 102 ntBASIC0.56□□□□□ -2.32
USP43Q70EL4 MIR6773-201ENST00000612812 74 ntBASIC0.56□□□□□ -2.32
USP43Q70EL4 MIR20A-201ENST00000362279 71 ntBASIC0.55□□□□□ -2.32
USP43Q70EL4 MIR140-201ENST00000385282 100 ntBASIC0.55□□□□□ -2.32
USP43Q70EL4 MIR4711-201ENST00000578274 70 ntBASIC0.55□□□□□ -2.32
USP43Q70EL4 DLEU2_4.2-201ENST00000616613 58 ntBASIC0.55□□□□□ -2.32
USP43Q70EL4 uc_338.17-201ENST00000619633 179 ntBASIC0.55□□□□□ -2.32
USP43Q70EL4 MIR6755-201ENST00000619993 66 ntBASIC0.55□□□□□ -2.32
USP43Q70EL4 ZBTB41-201ENST00000367405 8478 ntAPPRIS P1 TSL 1 (best) BASIC0.55□□□□□ -2.32
USP43Q70EL4 RNU6-502P-201ENST00000362419 108 ntBASIC0.54□□□□□ -2.32
USP43Q70EL4 Y_RNA.109-201ENST00000363215 102 ntBASIC0.54□□□□□ -2.32
USP43Q70EL4 Y_RNA.115-201ENST00000363272 98 ntBASIC0.54□□□□□ -2.32
USP43Q70EL4 RNU4-33P-201ENST00000364316 85 ntBASIC0.54□□□□□ -2.32
USP43Q70EL4 MIR548F3-201ENST00000408509 87 ntBASIC0.54□□□□□ -2.32
USP43Q70EL4 RNU7-119P-201ENST00000459279 63 ntBASIC0.54□□□□□ -2.32
USP43Q70EL4 RNU4-54P-201ENST00000516428 129 ntBASIC0.54□□□□□ -2.32
USP43Q70EL4 MIR5087-201ENST00000635826 76 ntBASIC0.54□□□□□ -2.32
USP43Q70EL4 SNORD115-25-201ENST00000362619 82 ntBASIC0.53□□□□□ -2.32
USP43Q70EL4 SNORD1B-201ENST00000363091 84 ntBASIC0.53□□□□□ -2.32
USP43Q70EL4 SNORA36.2-201ENST00000384004 127 ntBASIC0.53□□□□□ -2.32
USP43Q70EL4 MIRLET7B-201ENST00000385140 83 ntBASIC0.53□□□□□ -2.32
USP43Q70EL4 MIR501-201ENST00000390204 84 ntBASIC0.53□□□□□ -2.32
USP43Q70EL4 RNU7-188P-201ENST00000517063 64 ntBASIC0.53□□□□□ -2.32
USP43Q70EL4 MIR548X-201ENST00000580069 75 ntBASIC0.53□□□□□ -2.32
USP43Q70EL4 MIR4677-201ENST00000584153 80 ntBASIC0.53□□□□□ -2.32
USP43Q70EL4 SNORA25.18-201ENST00000607153 114 ntBASIC0.53□□□□□ -2.32
USP43Q70EL4 SAMD9-203ENST00000620985 6754 ntAPPRIS P1 TSL 2 BASIC0.53□□□□□ -2.33
USP43Q70EL4 RNU6ATAC29P-201ENST00000408088 125 ntBASIC0.52□□□□□ -2.33
USP43Q70EL4 RNU7-154P-201ENST00000516194 62 ntBASIC0.52□□□□□ -2.33
USP43Q70EL4 RNA5SP121-201ENST00000516537 101 ntBASIC0.52□□□□□ -2.33
USP43Q70EL4 MIR4490-201ENST00000582647 84 ntBASIC0.52□□□□□ -2.33
USP43Q70EL4 MIR3925-201ENST00000584674 77 ntBASIC0.52□□□□□ -2.33
USP43Q70EL4 MIR7110-201ENST00000612638 86 ntBASIC0.52□□□□□ -2.33
USP43Q70EL4 RN7SL660P-201ENST00000614852 299 ntBASIC0.52□□□□□ -2.33
USP43Q70EL4 C18orf54-201ENST00000300091 5237 ntAPPRIS P1 TSL 1 (best) BASIC0.51□□□□□ -2.33
USP43Q70EL4 RNU6-810P-201ENST00000364001 107 ntBASIC0.51□□□□□ -2.33
USP43Q70EL4 MIR527-201ENST00000385244 85 ntBASIC0.51□□□□□ -2.33
USP43Q70EL4 SNORA40B-201ENST00000385573 128 ntBASIC0.51□□□□□ -2.33
USP43Q70EL4 SNORD116.2-201ENST00000391251 93 ntBASIC0.51□□□□□ -2.33
USP43Q70EL4 RNA5SP193-201ENST00000410353 107 ntBASIC0.51□□□□□ -2.33
USP43Q70EL4 RNA5SP330-201ENST00000517096 96 ntBASIC0.51□□□□□ -2.33
USP43Q70EL4 MIR8087-201ENST00000612745 78 ntBASIC0.51□□□□□ -2.33
USP43Q70EL4 SNORD114-29-201ENST00000364819 70 ntBASIC0.5□□□□□ -2.33
USP43Q70EL4 SNORA2A-201ENST00000383885 135 ntBASIC0.5□□□□□ -2.33
USP43Q70EL4 RNU6-246P-201ENST00000384702 107 ntBASIC0.5□□□□□ -2.33
USP43Q70EL4 SNORA40.8-201ENST00000411034 126 ntBASIC0.5□□□□□ -2.33
USP43Q70EL4 Y_RNA.698-201ENST00000516798 118 ntBASIC0.5□□□□□ -2.33
USP43Q70EL4 MIR330-201ENST00000362196 94 ntBASIC0.49□□□□□ -2.33
USP43Q70EL4 RNU6-598P-201ENST00000364017 105 ntBASIC0.49□□□□□ -2.33
USP43Q70EL4 SNORD115-23-201ENST00000364461 82 ntBASIC0.49□□□□□ -2.33
USP43Q70EL4 MIR518A1-201ENST00000385068 85 ntBASIC0.49□□□□□ -2.33
USP43Q70EL4 RNU6-172P-201ENST00000411000 93 ntBASIC0.49□□□□□ -2.33
USP43Q70EL4 AC098934.3-201ENST00000430450 190 ntBASIC0.49□□□□□ -2.33
USP43Q70EL4 RNU6-848P-201ENST00000515948 107 ntBASIC0.49□□□□□ -2.33
USP43Q70EL4 RNU6-617P-201ENST00000516147 107 ntBASIC0.49□□□□□ -2.33
USP43Q70EL4 RNU6-473P-201ENST00000516164 107 ntBASIC0.49□□□□□ -2.33
USP43Q70EL4 RNU6-1049P-201ENST00000516414 107 ntBASIC0.49□□□□□ -2.33
USP43Q70EL4 SPRY4-IT1_2.1-201ENST00000612613 121 ntBASIC0.49□□□□□ -2.33
USP43Q70EL4 CCDC73-201ENST00000335185 3849 ntAPPRIS P2 TSL 2 BASIC0.48□□□□□ -2.33
USP43Q70EL4 RNU6-924P-201ENST00000362926 108 ntBASIC0.48□□□□□ -2.33
USP43Q70EL4 Y_RNA.423-201ENST00000384057 113 ntBASIC0.48□□□□□ -2.33
USP43Q70EL4 RNU6-930P-201ENST00000390938 100 ntBASIC0.48□□□□□ -2.33
USP43Q70EL4 MIR876-201ENST00000401147 81 ntBASIC0.48□□□□□ -2.33
USP43Q70EL4 RNA5SP470-201ENST00000516463 106 ntBASIC0.48□□□□□ -2.33
USP43Q70EL4 RNU6-229P-201ENST00000516614 102 ntBASIC0.48□□□□□ -2.33
USP43Q70EL4 RNU6-782P-201ENST00000516852 104 ntBASIC0.48□□□□□ -2.33
USP43Q70EL4 RNU6-1036P-201ENST00000383959 104 ntBASIC0.47□□□□□ -2.33
USP43Q70EL4 RNU6-458P-201ENST00000384179 107 ntBASIC0.47□□□□□ -2.33
USP43Q70EL4 SNORD2-201ENST00000459163 69 ntBASIC0.47□□□□□ -2.33
USP43Q70EL4 RNU6-419P-201ENST00000517030 63 ntBASIC0.47□□□□□ -2.33
USP43Q70EL4 U6.58-201ENST00000613107 107 ntBASIC0.47□□□□□ -2.33
USP43Q70EL4 RNU6-863P-201ENST00000515989 104 ntBASIC0.46□□□□□ -2.34
USP43Q70EL4 MIR4464-201ENST00000580818 92 ntBASIC0.46□□□□□ -2.34
Retrieved 100 of 98,524 protein–RNA pairs in 181.9 ms