Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 MIR5087-201ENST00000635826 76 ntBASIC0.41□□□□□ -2.34
RNF4P78317 RNU6-1327P-201ENST00000365302 105 ntBASIC0.4□□□□□ -2.35
RNF4P78317 MIR1265-201ENST00000408444 86 ntBASIC0.4□□□□□ -2.35
RNF4P78317 PVT1_3.1-201ENST00000620853 95 ntBASIC0.4□□□□□ -2.35
RNF4P78317 CEP290-203ENST00000547691 5968 ntTSL 1 (best) BASIC0.39□□□□□ -2.35
RNF4P78317 AC090625.1-201ENST00000357130 210 ntBASIC0.39□□□□□ -2.35
RNF4P78317 RNU6-337P-201ENST00000391243 106 ntBASIC0.39□□□□□ -2.35
RNF4P78317 AC108740.1-201ENST00000498629 225 ntBASIC0.39□□□□□ -2.35
RNF4P78317 AP000676.1-201ENST00000533307 52 ntBASIC0.39□□□□□ -2.35
RNF4P78317 SNORD115-25-201ENST00000362619 82 ntBASIC0.38□□□□□ -2.35
RNF4P78317 RNA5SP325-201ENST00000363756 130 ntBASIC0.38□□□□□ -2.35
RNF4P78317 KIF20B-201ENST00000260753 6306 ntAPPRIS P3 TSL 1 (best) BASIC0.37□□□□□ -2.35
RNF4P78317 RNA5SP215-201ENST00000363440 122 ntBASIC0.37□□□□□ -2.35
RNF4P78317 MIR106A-201ENST00000384870 81 ntBASIC0.37□□□□□ -2.35
RNF4P78317 MIR1255B2-201ENST00000408618 67 ntBASIC0.37□□□□□ -2.35
RNF4P78317 RNU6-542P-201ENST00000516405 103 ntBASIC0.37□□□□□ -2.35
RNF4P78317 MIR4511-201ENST00000582784 87 ntBASIC0.37□□□□□ -2.35
RNF4P78317 MIR6514-201ENST00000622549 70 ntBASIC0.37□□□□□ -2.35
RNF4P78317 Y_RNA.205-201ENST00000364128 113 ntBASIC0.36□□□□□ -2.35
RNF4P78317 RNU6-471P-201ENST00000383944 106 ntBASIC0.36□□□□□ -2.35
RNF4P78317 MIR630-201ENST00000384957 97 ntBASIC0.36□□□□□ -2.35
RNF4P78317 RNA5SP480-201ENST00000516840 109 ntBASIC0.36□□□□□ -2.35
RNF4P78317 MIR517B-201ENST00000385102 67 ntBASIC0.35□□□□□ -2.35
RNF4P78317 RNA5SP163-201ENST00000410304 99 ntBASIC0.35□□□□□ -2.35
RNF4P78317 RNU7-174P-201ENST00000516248 59 ntBASIC0.35□□□□□ -2.35
RNF4P78317 RN7SL793P-201ENST00000583259 296 ntBASIC0.35□□□□□ -2.35
RNF4P78317 RNU6-502P-201ENST00000362419 108 ntBASIC0.34□□□□□ -2.36
RNF4P78317 SNORA50A-201ENST00000384225 134 ntBASIC0.34□□□□□ -2.36
RNF4P78317 RNU6-518P-201ENST00000516056 96 ntBASIC0.34□□□□□ -2.36
RNF4P78317 RNA5SP134-201ENST00000516492 96 ntBASIC0.34□□□□□ -2.36
RNF4P78317 AC103706.3-201ENST00000636297 85 ntBASIC0.34□□□□□ -2.36
RNF4P78317 RNA5SP98-201ENST00000363158 137 ntBASIC0.33□□□□□ -2.36
RNF4P78317 VTRNA1-3-201ENST00000365645 89 ntBASIC0.33□□□□□ -2.36
RNF4P78317 MIR9-2-201ENST00000384838 87 ntBASIC0.33□□□□□ -2.36
RNF4P78317 MIRLET7B-201ENST00000385140 83 ntBASIC0.33□□□□□ -2.36
RNF4P78317 MIR548H2-201ENST00000408874 88 ntBASIC0.33□□□□□ -2.36
RNF4P78317 SNORD114-23-201ENST00000363536 72 ntBASIC0.32□□□□□ -2.36
RNF4P78317 RNU6-302P-201ENST00000365249 107 ntBASIC0.32□□□□□ -2.36
RNF4P78317 MIR593-201ENST00000384856 100 ntBASIC0.32□□□□□ -2.36
RNF4P78317 SCARNA21.1-201ENST00000515996 128 ntBASIC0.32□□□□□ -2.36
RNF4P78317 MIR4315-1-201ENST00000636800 73 ntBASIC0.32□□□□□ -2.36
RNF4P78317 MIR4315-2-201ENST00000640925 73 ntBASIC0.32□□□□□ -2.36
RNF4P78317 SNORD114-26-201ENST00000363543 72 ntBASIC0.31□□□□□ -2.36
RNF4P78317 Y_RNA.540-201ENST00000384638 111 ntBASIC0.31□□□□□ -2.36
RNF4P78317 TRAJ9-201ENST00000390528 61 ntAPPRIS P1 BASIC0.31□□□□□ -2.36
RNF4P78317 AC104408.1-201ENST00000605241 170 ntBASIC0.31□□□□□ -2.36
RNF4P78317 RNU6-698P-201ENST00000363523 107 ntBASIC0.3□□□□□ -2.36
RNF4P78317 RNU6-34P-201ENST00000364874 107 ntBASIC0.3□□□□□ -2.36
RNF4P78317 AL021921.1-201ENST00000442774 93 ntBASIC0.3□□□□□ -2.36
RNF4P78317 U4.4-201ENST00000620626 117 ntBASIC0.3□□□□□ -2.36
RNF4P78317 MIR610-201ENST00000385139 96 ntBASIC0.29□□□□□ -2.36
RNF4P78317 RNU6-1246P-201ENST00000391064 107 ntBASIC0.29□□□□□ -2.36
RNF4P78317 RNU6ATAC22P-201ENST00000516794 89 ntBASIC0.29□□□□□ -2.36
RNF4P78317 MIR193B-201ENST00000384907 83 ntBASIC0.28□□□□□ -2.36
RNF4P78317 MIR519A2-201ENST00000384990 87 ntBASIC0.28□□□□□ -2.36
RNF4P78317 AC008883.1-201ENST00000506562 193 ntTSL 3 BASIC0.28□□□□□ -2.36
RNF4P78317 AC010487.4-201ENST00000637027 61 ntBASIC0.28□□□□□ -2.36
RNF4P78317 SNORD114-5-201ENST00000362928 70 ntBASIC0.26□□□□□ -2.37
RNF4P78317 RNA5SP214-201ENST00000363378 118 ntBASIC0.26□□□□□ -2.37
RNF4P78317 Y_RNA.246-201ENST00000364495 108 ntBASIC0.26□□□□□ -2.37
RNF4P78317 SNORD113-2-201ENST00000391082 72 ntBASIC0.26□□□□□ -2.37
RNF4P78317 CR383656.4-201ENST00000546909 122 ntBASIC0.26□□□□□ -2.37
RNF4P78317 MIR6779-201ENST00000617283 64 ntBASIC0.26□□□□□ -2.37
RNF4P78317 Y_RNA.325-201ENST00000365171 122 ntBASIC0.25□□□□□ -2.37
RNF4P78317 MIR145-201ENST00000384967 88 ntBASIC0.25□□□□□ -2.37
RNF4P78317 MIR892B-201ENST00000401279 77 ntBASIC0.25□□□□□ -2.37
RNF4P78317 uc_338.36-201ENST00000622331 158 ntBASIC0.25□□□□□ -2.37
RNF4P78317 SNORA42.1-201ENST00000363515 137 ntBASIC0.24□□□□□ -2.37
RNF4P78317 SNORA25.5-201ENST00000363782 126 ntBASIC0.24□□□□□ -2.37
RNF4P78317 RNA5SP192-201ENST00000364404 120 ntBASIC0.24□□□□□ -2.37
RNF4P78317 RNU6-180P-201ENST00000516697 61 ntBASIC0.24□□□□□ -2.37
RNF4P78317 MIR1273G-201ENST00000577677 100 ntBASIC0.24□□□□□ -2.37
RNF4P78317 RNU6-92P-201ENST00000605893 104 ntBASIC0.23□□□□□ -2.37
RNF4P78317 MIR148A-201ENST00000362215 68 ntBASIC0.22□□□□□ -2.37
RNF4P78317 AC110620.1-201ENST00000416042 228 ntBASIC0.22□□□□□ -2.37
RNF4P78317 MIR5093-201ENST00000583199 100 ntBASIC0.22□□□□□ -2.37
RNF4P78317 RNU7-159P-201ENST00000459284 62 ntBASIC0.21□□□□□ -2.38
RNF4P78317 RNU7-154P-201ENST00000516194 62 ntBASIC0.21□□□□□ -2.38
RNF4P78317 RNA5SP470-201ENST00000516463 106 ntBASIC0.21□□□□□ -2.38
RNF4P78317 MIR6507-201ENST00000613630 70 ntBASIC0.21□□□□□ -2.38
RNF4P78317 snoR1.1-201ENST00000628177 80 ntBASIC0.21□□□□□ -2.38
RNF4P78317 SNORD114-9-201ENST00000364370 72 ntBASIC0.2□□□□□ -2.38
RNF4P78317 RNU6-455P-201ENST00000384681 107 ntBASIC0.2□□□□□ -2.38
RNF4P78317 MIR548AG1-201ENST00000579932 66 ntBASIC0.2□□□□□ -2.38
RNF4P78317 MIR924-201ENST00000638017 53 ntBASIC0.2□□□□□ -2.38
RNF4P78317 SNORD115-23-201ENST00000364461 82 ntBASIC0.19□□□□□ -2.38
RNF4P78317 SNORA62.5-201ENST00000516634 120 ntBASIC0.19□□□□□ -2.38
RNF4P78317 AL353803.5-201ENST00000599815 141 ntBASIC0.19□□□□□ -2.38
RNF4P78317 RNU7-165P-201ENST00000458864 60 ntBASIC0.18□□□□□ -2.38
RNF4P78317 MIR330-201ENST00000362196 94 ntBASIC0.17□□□□□ -2.38
RNF4P78317 SNORD60.1-201ENST00000362451 73 ntBASIC0.17□□□□□ -2.38
RNF4P78317 RNU6-1133P-201ENST00000410963 100 ntBASIC0.17□□□□□ -2.38
RNF4P78317 MIR4514-201ENST00000581410 57 ntBASIC0.17□□□□□ -2.38
RNF4P78317 MIR8087-201ENST00000612745 78 ntBASIC0.17□□□□□ -2.38
RNF4P78317 RNU6ATAC29P-201ENST00000408088 125 ntBASIC0.16□□□□□ -2.38
RNF4P78317 MIR4432-201ENST00000581823 84 ntBASIC0.16□□□□□ -2.38
RNF4P78317 MIR4743-201ENST00000584576 69 ntBASIC0.16□□□□□ -2.38
RNF4P78317 HOTAIR_3.1-201ENST00000611352 97 ntBASIC0.16□□□□□ -2.38
RNF4P78317 AL391099.1-201ENST00000624635 187 ntBASIC0.16□□□□□ -2.38
RNF4P78317 RNU6-929P-201ENST00000384429 107 ntBASIC0.15□□□□□ -2.39
Retrieved 100 of 98,524 protein–RNA pairs in 198.5 ms