Protein–RNA interactions for Protein: P48378

RFX2, DNA-binding protein RFX2, humanhuman

Predictions only

Length 723 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX2P48378 RN7SL793P-201ENST00000583259 296 ntBASIC0.03□□□□□ -2.4
RFX2P48378 MIR6773-201ENST00000612812 74 ntBASIC0.03□□□□□ -2.4
RFX2P48378 RNU6-502P-201ENST00000362419 108 ntBASIC0.02□□□□□ -2.41
RFX2P48378 SNORD113.1-201ENST00000363280 73 ntBASIC0.02□□□□□ -2.41
RFX2P48378 SNORD115-31-201ENST00000365318 82 ntBASIC0.02□□□□□ -2.41
RFX2P48378 RNU6-337P-201ENST00000391243 106 ntBASIC0.02□□□□□ -2.41
RFX2P48378 RNU6-881P-201ENST00000516813 102 ntBASIC0.02□□□□□ -2.41
RFX2P48378 MIR4514-201ENST00000581410 57 ntBASIC0.02□□□□□ -2.41
RFX2P48378 MIR6507-201ENST00000613630 70 ntBASIC0.02□□□□□ -2.41
RFX2P48378 SYCP2-202ENST00000371001 5479 ntAPPRIS P2 TSL 1 (best) BASIC0.02□□□□□ -2.41
RFX2P48378 SNORD114-26-201ENST00000363543 72 ntBASIC0.01□□□□□ -2.41
RFX2P48378 RNU6-523P-201ENST00000516304 54 ntBASIC0.01□□□□□ -2.41
RFX2P48378 MIR4290-201ENST00000583807 95 ntBASIC0.01□□□□□ -2.41
RFX2P48378 AC023932.2-201ENST00000603176 175 ntBASIC0.01□□□□□ -2.41
RFX2P48378 MIR193B-201ENST00000384907 83 ntBASIC0□□□□□ -2.41
RFX2P48378 MIR4667-201ENST00000578933 66 ntBASIC0□□□□□ -2.41
RFX2P48378 SNORD114-16-201ENST00000363044 70 ntBASIC-0.01□□□□□ -2.41
RFX2P48378 RNU6-895P-201ENST00000384125 103 ntBASIC-0.01□□□□□ -2.41
RFX2P48378 Y_RNA.565-201ENST00000384719 101 ntBASIC-0.01□□□□□ -2.41
RFX2P48378 RNU6-455P-201ENST00000384681 107 ntBASIC-0.02□□□□□ -2.41
RFX2P48378 MIR548C-201ENST00000384815 97 ntBASIC-0.02□□□□□ -2.41
RFX2P48378 MIRLET7B-201ENST00000385140 83 ntBASIC-0.02□□□□□ -2.41
RFX2P48378 AC244250.2-201ENST00000418731 148 ntBASIC-0.02□□□□□ -2.41
RFX2P48378 MTND4LP1-201ENST00000446263 157 ntBASIC-0.02□□□□□ -2.41
RFX2P48378 CYP3A54P-201ENST00000566950 75 ntBASIC-0.02□□□□□ -2.41
RFX2P48378 PVT1_3.1-201ENST00000620853 95 ntBASIC-0.02□□□□□ -2.41
RFX2P48378 Y_RNA.118-201ENST00000363300 101 ntBASIC-0.03□□□□□ -2.41
RFX2P48378 AC008883.1-201ENST00000506562 193 ntTSL 3 BASIC-0.03□□□□□ -2.41
RFX2P48378 MIR4768-201ENST00000585270 74 ntBASIC-0.03□□□□□ -2.41
RFX2P48378 MIR6718-201ENST00000616153 80 ntBASIC-0.03□□□□□ -2.41
RFX2P48378 MIR9-2-201ENST00000384838 87 ntBASIC-0.04□□□□□ -2.42
RFX2P48378 MIR1255B2-201ENST00000408618 67 ntBASIC-0.04□□□□□ -2.42
RFX2P48378 RNU6-634P-201ENST00000459134 106 ntBASIC-0.04□□□□□ -2.42
RFX2P48378 uc_338.36-201ENST00000622331 158 ntBASIC-0.04□□□□□ -2.42
RFX2P48378 Clostridiales-1.4-201ENST00000636807 150 ntBASIC-0.04□□□□□ -2.42
RFX2P48378 MIR371B-201ENST00000638082 66 ntBASIC-0.04□□□□□ -2.42
RFX2P48378 RNU6-1216P-201ENST00000362590 107 ntBASIC-0.05□□□□□ -2.42
RFX2P48378 RNU6-668P-201ENST00000364180 107 ntBASIC-0.05□□□□□ -2.42
RFX2P48378 MIR1273G-201ENST00000577677 100 ntBASIC-0.05□□□□□ -2.42
RFX2P48378 MIR655-201ENST00000362159 97 ntBASIC-0.06□□□□□ -2.42
RFX2P48378 RNU6-540P-201ENST00000384622 101 ntBASIC-0.06□□□□□ -2.42
RFX2P48378 TRAJ54-201ENST00000390484 60 ntAPPRIS P1 BASIC-0.06□□□□□ -2.42
RFX2P48378 MIR330-201ENST00000362196 94 ntBASIC-0.07□□□□□ -2.42
RFX2P48378 SNORD49B-201ENST00000365172 72 ntBASIC-0.07□□□□□ -2.42
RFX2P48378 RNU6-46P-201ENST00000383860 107 ntBASIC-0.07□□□□□ -2.42
RFX2P48378 RNU6-900P-201ENST00000384498 102 ntBASIC-0.07□□□□□ -2.42
RFX2P48378 SNORD116-24-201ENST00000384549 92 ntBASIC-0.07□□□□□ -2.42
RFX2P48378 RNU6-871P-201ENST00000516122 100 ntBASIC-0.07□□□□□ -2.42
RFX2P48378 RNU6-1089P-201ENST00000516473 104 ntBASIC-0.07□□□□□ -2.42
RFX2P48378 U2.7-201ENST00000619197 100 ntBASIC-0.07□□□□□ -2.42
RFX2P48378 RNU6-1296P-201ENST00000383879 107 ntBASIC-0.08□□□□□ -2.42
RFX2P48378 RNU7-55P-201ENST00000459426 62 ntBASIC-0.08□□□□□ -2.42
RFX2P48378 RNU6-518P-201ENST00000516056 96 ntBASIC-0.08□□□□□ -2.42
RFX2P48378 snoR1.1-201ENST00000628177 80 ntBASIC-0.08□□□□□ -2.42
RFX2P48378 SNORD114-12-201ENST00000365400 75 ntBASIC-0.09□□□□□ -2.42
RFX2P48378 RNU6-1133P-201ENST00000410963 100 ntBASIC-0.09□□□□□ -2.42
RFX2P48378 AC104692.1-201ENST00000472406 90 ntBASIC-0.09□□□□□ -2.42
RFX2P48378 AL391099.1-201ENST00000624635 187 ntBASIC-0.09□□□□□ -2.42
RFX2P48378 RNU6-663P-201ENST00000391105 106 ntBASIC-0.1□□□□□ -2.43
RFX2P48378 RNA5SP63-201ENST00000391225 112 ntBASIC-0.1□□□□□ -2.43
RFX2P48378 SNORD30.1-201ENST00000391309 70 ntBASIC-0.1□□□□□ -2.43
RFX2P48378 MIR8087-201ENST00000612745 78 ntBASIC-0.1□□□□□ -2.43
RFX2P48378 AL109933.3-201ENST00000619095 188 ntBASIC-0.1□□□□□ -2.43
RFX2P48378 SNORD115-23-201ENST00000364461 82 ntBASIC-0.11□□□□□ -2.43
RFX2P48378 RNU6-901P-201ENST00000384593 106 ntBASIC-0.11□□□□□ -2.43
RFX2P48378 MIR489-201ENST00000384923 84 ntBASIC-0.11□□□□□ -2.43
RFX2P48378 MIR519A2-201ENST00000384990 87 ntBASIC-0.11□□□□□ -2.43
RFX2P48378 MIR4432-201ENST00000581823 84 ntBASIC-0.11□□□□□ -2.43
RFX2P48378 MIR548V-201ENST00000584165 80 ntBASIC-0.11□□□□□ -2.43
RFX2P48378 RNU6-973P-201ENST00000364690 107 ntBASIC-0.12□□□□□ -2.43
RFX2P48378 AL445193.1-201ENST00000441183 141 ntBASIC-0.12□□□□□ -2.43
RFX2P48378 SNORD56B-201ENST00000384713 71 ntBASIC-0.13□□□□□ -2.43
RFX2P48378 AL021921.1-201ENST00000442774 93 ntBASIC-0.13□□□□□ -2.43
RFX2P48378 RNA5SP470-201ENST00000516463 106 ntBASIC-0.13□□□□□ -2.43
RFX2P48378 AL353803.5-201ENST00000599815 141 ntBASIC-0.13□□□□□ -2.43
RFX2P48378 RNU6-649P-201ENST00000384463 107 ntBASIC-0.14□□□□□ -2.43
RFX2P48378 MIR517B-201ENST00000385102 67 ntBASIC-0.14□□□□□ -2.43
RFX2P48378 RNU7-174P-201ENST00000516248 59 ntBASIC-0.14□□□□□ -2.43
RFX2P48378 MIR5190-201ENST00000581537 80 ntBASIC-0.14□□□□□ -2.43
RFX2P48378 MIR5704-201ENST00000584029 77 ntBASIC-0.14□□□□□ -2.43
RFX2P48378 SNORA18.1-201ENST00000363418 128 ntBASIC-0.15□□□□□ -2.43
RFX2P48378 RNA5SP215-201ENST00000363440 122 ntBASIC-0.15□□□□□ -2.43
RFX2P48378 MIR1197-201ENST00000408818 88 ntBASIC-0.15□□□□□ -2.43
RFX2P48378 MIR1295B-201ENST00000636144 60 ntBASIC-0.15□□□□□ -2.43
RFX2P48378 Y_RNA.443-201ENST00000384135 111 ntBASIC-0.16□□□□□ -2.44
RFX2P48378 RNU6-630P-201ENST00000391258 106 ntBASIC-0.16□□□□□ -2.44
RFX2P48378 AC096531.1-201ENST00000419107 107 ntBASIC-0.16□□□□□ -2.44
RFX2P48378 SNORA32.1-201ENST00000364514 115 ntBASIC-0.17□□□□□ -2.44
RFX2P48378 RNU6-302P-201ENST00000365249 107 ntBASIC-0.17□□□□□ -2.44
RFX2P48378 MIR630-201ENST00000384957 97 ntBASIC-0.17□□□□□ -2.44
RFX2P48378 RNU6ATAC29P-201ENST00000408088 125 ntBASIC-0.17□□□□□ -2.44
RFX2P48378 RNU7-154P-201ENST00000516194 62 ntBASIC-0.17□□□□□ -2.44
RFX2P48378 Y_RNA.375-201ENST00000365625 101 ntBASIC-0.18□□□□□ -2.44
RFX2P48378 RNU6-1246P-201ENST00000391064 107 ntBASIC-0.18□□□□□ -2.44
RFX2P48378 SNORD4A-201ENST00000459174 72 ntBASIC-0.18□□□□□ -2.44
RFX2P48378 MIR4263-201ENST00000584745 83 ntBASIC-0.18□□□□□ -2.44
RFX2P48378 AL590491.3-201ENST00000610731 82 ntBASIC-0.18□□□□□ -2.44
RFX2P48378 RNU6-698P-201ENST00000363523 107 ntBASIC-0.19□□□□□ -2.44
RFX2P48378 Y_RNA.246-201ENST00000364495 108 ntBASIC-0.19□□□□□ -2.44
RFX2P48378 RNU6-34P-201ENST00000364874 107 ntBASIC-0.19□□□□□ -2.44
Retrieved 100 of 98,524 protein–RNA pairs in 200 ms