Protein–RNA interactions for Protein: P43246

MSH2, DNA mismatch repair protein Msh2, humanhuman

Predictions only

Length 934 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH2P43246 RNU6-168P-201ENST00000516189 101 ntBASIC-0.7□□□□□ -2.52
MSH2P43246 RNA5SP395-201ENST00000516567 118 ntBASIC-0.7□□□□□ -2.52
MSH2P43246 MIR6854-201ENST00000614935 69 ntBASIC-0.71□□□□□ -2.52
MSH2P43246 AC090617.8-201ENST00000623339 167 ntBASIC-0.71□□□□□ -2.52
MSH2P43246 SNORA33.1-201ENST00000364957 130 ntBASIC-0.72□□□□□ -2.52
MSH2P43246 RNU6-844P-201ENST00000517175 102 ntBASIC-0.72□□□□□ -2.52
MSH2P43246 RNU6-675P-201ENST00000384236 104 ntBASIC-0.73□□□□□ -2.53
MSH2P43246 RNA5SP89-201ENST00000410300 108 ntBASIC-0.73□□□□□ -2.53
MSH2P43246 SNORA13-201ENST00000458790 133 ntBASIC-0.73□□□□□ -2.53
MSH2P43246 AC108676.2-201ENST00000605225 163 ntBASIC-0.73□□□□□ -2.53
MSH2P43246 SNORD114-14-201ENST00000362723 75 ntBASIC-0.74□□□□□ -2.53
MSH2P43246 RNA5SP368-201ENST00000364298 116 ntBASIC-0.74□□□□□ -2.53
MSH2P43246 AL353795.2-201ENST00000431804 425 ntTSL 2 BASIC-0.74□□□□□ -2.53
MSH2P43246 RNU6-557P-201ENST00000516842 110 ntBASIC-0.74□□□□□ -2.53
MSH2P43246 MIR521-2-201ENST00000384818 87 ntBASIC-0.75□□□□□ -2.53
MSH2P43246 Y_RNA.611-201ENST00000410682 108 ntBASIC-0.75□□□□□ -2.53
MSH2P43246 RPS29P8-201ENST00000445109 171 ntBASIC-0.75□□□□□ -2.53
MSH2P43246 MIR8068-201ENST00000618032 68 ntBASIC-0.75□□□□□ -2.53
MSH2P43246 MIR224-201ENST00000384889 81 ntBASIC-0.76□□□□□ -2.53
MSH2P43246 MIR518B-201ENST00000385127 83 ntBASIC-0.76□□□□□ -2.53
MSH2P43246 SNORD75.1-201ENST00000408373 60 ntBASIC-0.76□□□□□ -2.53
MSH2P43246 MIR6739-201ENST00000622461 75 ntBASIC-0.76□□□□□ -2.53
MSH2P43246 SNORA3B-201ENST00000391305 131 ntBASIC-0.77□□□□□ -2.53
MSH2P43246 AC021146.6-201ENST00000514659 117 ntBASIC-0.77□□□□□ -2.53
MSH2P43246 Y_RNA.17-201ENST00000362433 111 ntBASIC-0.78□□□□□ -2.53
MSH2P43246 RNU6-1131P-201ENST00000364955 107 ntBASIC-0.78□□□□□ -2.53
MSH2P43246 RNA5SP25-201ENST00000410815 110 ntBASIC-0.78□□□□□ -2.53
MSH2P43246 CYP3A54P-201ENST00000566950 75 ntBASIC-0.78□□□□□ -2.53
MSH2P43246 RNU6-153P-201ENST00000364422 104 ntBASIC-0.79□□□□□ -2.54
MSH2P43246 RNU6-1134P-201ENST00000365156 101 ntBASIC-0.79□□□□□ -2.54
MSH2P43246 SNORA62.4-201ENST00000365504 151 ntBASIC-0.79□□□□□ -2.54
MSH2P43246 RNU6-49P-201ENST00000384256 107 ntBASIC-0.79□□□□□ -2.54
MSH2P43246 SNORD95.1-201ENST00000364099 68 ntBASIC-0.8□□□□□ -2.54
MSH2P43246 SNORD74.6-201ENST00000364796 70 ntBASIC-0.8□□□□□ -2.54
MSH2P43246 RNU6-686P-201ENST00000364839 107 ntBASIC-0.8□□□□□ -2.54
MSH2P43246 MIR1255B2-201ENST00000408618 67 ntBASIC-0.8□□□□□ -2.54
MSH2P43246 RNA5SP470-201ENST00000516463 106 ntBASIC-0.8□□□□□ -2.54
MSH2P43246 AL353803.5-201ENST00000599815 141 ntBASIC-0.8□□□□□ -2.54
MSH2P43246 MIR6086-201ENST00000638065 55 ntBASIC-0.8□□□□□ -2.54
MSH2P43246 SNORD22.1-201ENST00000516331 125 ntBASIC-0.81□□□□□ -2.54
MSH2P43246 MIR3179-1-201ENST00000578940 84 ntBASIC-0.81□□□□□ -2.54
MSH2P43246 MIR3179-2-201ENST00000579107 84 ntBASIC-0.81□□□□□ -2.54
MSH2P43246 MIR3179-3-201ENST00000579566 84 ntBASIC-0.81□□□□□ -2.54
MSH2P43246 MIR3179-4-201ENST00000617599 84 ntBASIC-0.81□□□□□ -2.54
MSH2P43246 AC006160.2-201ENST00000637708 154 ntBASIC-0.81□□□□□ -2.54
MSH2P43246 RNU6-129P-201ENST00000391022 107 ntBASIC-0.82□□□□□ -2.54
MSH2P43246 Y_RNA.593-201ENST00000410292 98 ntBASIC-0.82□□□□□ -2.54
MSH2P43246 RNU6-303P-201ENST00000517091 106 ntBASIC-0.82□□□□□ -2.54
MSH2P43246 MIR4436A-201ENST00000585278 85 ntBASIC-0.83□□□□□ -2.54
MSH2P43246 hsa-mir-4536-1.1-201ENST00000636519 88 ntBASIC-0.83□□□□□ -2.54
MSH2P43246 MIRLET7A1-201ENST00000362295 80 ntBASIC-0.84□□□□□ -2.54
MSH2P43246 RNU6-478P-201ENST00000363904 110 ntBASIC-0.84□□□□□ -2.54
MSH2P43246 snoMBII-202.2-201ENST00000517263 86 ntBASIC-0.84□□□□□ -2.54
MSH2P43246 RNU6-721P-201ENST00000410155 105 ntBASIC-0.85□□□□□ -2.55
MSH2P43246 IGLL4P-201ENST00000614590 133 ntBASIC-0.85□□□□□ -2.55
MSH2P43246 RNU6-1250P-201ENST00000391218 107 ntBASIC-0.86□□□□□ -2.55
MSH2P43246 RNY4P30-201ENST00000410216 95 ntBASIC-0.86□□□□□ -2.55
MSH2P43246 MIR3675-201ENST00000583661 73 ntBASIC-0.86□□□□□ -2.55
MSH2P43246 Y_RNA.178-201ENST00000363832 102 ntBASIC-0.87□□□□□ -2.55
MSH2P43246 RNY1P1-201ENST00000364372 112 ntBASIC-0.87□□□□□ -2.55
MSH2P43246 Y_RNA.484-201ENST00000384389 103 ntBASIC-0.87□□□□□ -2.55
MSH2P43246 MT-TQ-201ENST00000387372 72 ntBASIC-0.87□□□□□ -2.55
MSH2P43246 RNU6ATAC29P-201ENST00000408088 125 ntBASIC-0.87□□□□□ -2.55
MSH2P43246 Y_RNA.607-201ENST00000410597 98 ntBASIC-0.87□□□□□ -2.55
MSH2P43246 AC074348.1-201ENST00000426503 132 ntBASIC-0.87□□□□□ -2.55
MSH2P43246 MIR4464-201ENST00000580818 92 ntBASIC-0.87□□□□□ -2.55
MSH2P43246 RNU6-330P-201ENST00000363015 107 ntBASIC-0.88□□□□□ -2.55
MSH2P43246 SNORD114-15-201ENST00000364687 72 ntBASIC-0.88□□□□□ -2.55
MSH2P43246 RNU6-656P-201ENST00000516785 107 ntBASIC-0.88□□□□□ -2.55
MSH2P43246 Y_RNA.73-201ENST00000362910 113 ntBASIC-0.89□□□□□ -2.55
MSH2P43246 Y_RNA.189-201ENST00000363959 112 ntBASIC-0.89□□□□□ -2.55
MSH2P43246 Y_RNA.426-201ENST00000384068 113 ntBASIC-0.89□□□□□ -2.55
MSH2P43246 Y_RNA.610-201ENST00000410681 103 ntBASIC-0.89□□□□□ -2.55
MSH2P43246 RNU4-63P-201ENST00000411313 118 ntBASIC-0.89□□□□□ -2.55
MSH2P43246 AP000533.3-201ENST00000447704 118 ntBASIC-0.89□□□□□ -2.55
MSH2P43246 AC022137.1-201ENST00000483735 151 ntBASIC-0.89□□□□□ -2.55
MSH2P43246 Y_RNA.694-201ENST00000516677 117 ntBASIC-0.89□□□□□ -2.55
MSH2P43246 Y_RNA.81-201ENST00000362997 102 ntBASIC-0.9□□□□□ -2.55
MSH2P43246 SNORA8.1-201ENST00000384250 140 ntBASIC-0.9□□□□□ -2.55
MSH2P43246 MIR124-2-201ENST00000385081 109 ntBASIC-0.9□□□□□ -2.55
MSH2P43246 RNU7-154P-201ENST00000516194 62 ntBASIC-0.9□□□□□ -2.55
MSH2P43246 RNU6-881P-201ENST00000516813 102 ntBASIC-0.9□□□□□ -2.55
MSH2P43246 MIR5588-201ENST00000581890 63 ntBASIC-0.9□□□□□ -2.55
MSH2P43246 AL445584.3-201ENST00000617173 78 ntBASIC-0.9□□□□□ -2.55
MSH2P43246 HOTAIRM1_3.1-201ENST00000619974 59 ntBASIC-0.9□□□□□ -2.55
MSH2P43246 MIR6888-201ENST00000621977 67 ntBASIC-0.9□□□□□ -2.55
MSH2P43246 Y_RNA.532-201ENST00000384590 113 ntBASIC-0.91□□□□□ -2.56
MSH2P43246 RNU6-380P-201ENST00000410207 107 ntBASIC-0.91□□□□□ -2.56
MSH2P43246 SNORD18.2-201ENST00000459604 70 ntBASIC-0.91□□□□□ -2.56
MSH2P43246 MIR519A2-201ENST00000384990 87 ntBASIC-0.92□□□□□ -2.56
MSH2P43246 RNU6-518P-201ENST00000516056 96 ntBASIC-0.92□□□□□ -2.56
MSH2P43246 MIR1297-201ENST00000637311 77 ntBASIC-0.92□□□□□ -2.56
MSH2P43246 RNU6-645P-201ENST00000364649 106 ntBASIC-0.93□□□□□ -2.56
MSH2P43246 RNU6-979P-201ENST00000383896 107 ntBASIC-0.93□□□□□ -2.56
MSH2P43246 MIR517B-201ENST00000385102 67 ntBASIC-0.93□□□□□ -2.56
MSH2P43246 AL021921.1-201ENST00000442774 93 ntBASIC-0.93□□□□□ -2.56
MSH2P43246 MIR3681-201ENST00000580089 72 ntBASIC-0.93□□□□□ -2.56
MSH2P43246 Y_RNA.219-201ENST00000364232 113 ntBASIC-0.94□□□□□ -2.56
MSH2P43246 RNU6-807P-201ENST00000516805 107 ntBASIC-0.94□□□□□ -2.56
MSH2P43246 RNU6-315P-201ENST00000362666 107 ntBASIC-0.95□□□□□ -2.56
Retrieved 100 of 98,524 protein–RNA pairs in 260.7 ms