Protein–RNA interactions for Protein: P28702

RXRB, Retinoic acid receptor RXR-beta, humanhuman

Predictions only

Length 533 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RXRBP28702 SNORD118-201ENST00000363593 134 ntBASIC0.98□□□□□ -2.25
RXRBP28702 RNU6ATAC27P-201ENST00000408289 119 ntBASIC0.98□□□□□ -2.25
RXRBP28702 MIR6866-201ENST00000638146 69 ntBASIC0.98□□□□□ -2.25
RXRBP28702 RNU6-110P-201ENST00000384508 104 ntBASIC0.97□□□□□ -2.25
RXRBP28702 MIR140-201ENST00000385282 100 ntBASIC0.97□□□□□ -2.25
RXRBP28702 RNU6-1246P-201ENST00000391064 107 ntBASIC0.97□□□□□ -2.25
RXRBP28702 SNORD113-2-201ENST00000391082 72 ntBASIC0.97□□□□□ -2.25
RXRBP28702 RNU6-1232P-201ENST00000516299 86 ntBASIC0.97□□□□□ -2.25
RXRBP28702 CYP3A54P-201ENST00000566950 75 ntBASIC0.97□□□□□ -2.25
RXRBP28702 Y_RNA.325-201ENST00000365171 122 ntBASIC0.96□□□□□ -2.26
RXRBP28702 SNORA49-201ENST00000386157 136 ntBASIC0.96□□□□□ -2.26
RXRBP28702 MIR7978-201ENST00000636158 59 ntBASIC0.96□□□□□ -2.26
RXRBP28702 SNORA36.2-201ENST00000384004 127 ntBASIC0.95□□□□□ -2.26
RXRBP28702 SNORA41B-201ENST00000384785 128 ntBASIC0.95□□□□□ -2.26
RXRBP28702 RNU6-351P-201ENST00000516097 100 ntBASIC0.95□□□□□ -2.26
RXRBP28702 AC244090.1-201ENST00000441884 93 ntBASIC0.94□□□□□ -2.26
RXRBP28702 SNORD114-2-201ENST00000363953 78 ntBASIC0.93□□□□□ -2.26
RXRBP28702 Y_RNA.246-201ENST00000364495 108 ntBASIC0.93□□□□□ -2.26
RXRBP28702 RNU6-337P-201ENST00000391243 106 ntBASIC0.93□□□□□ -2.26
RXRBP28702 RNU4-54P-201ENST00000516428 129 ntBASIC0.93□□□□□ -2.26
RXRBP28702 MIR4636-201ENST00000582271 80 ntBASIC0.93□□□□□ -2.26
RXRBP28702 AC243829.6-201ENST00000612652 106 ntBASIC0.93□□□□□ -2.26
RXRBP28702 MIR6755-201ENST00000619993 66 ntBASIC0.93□□□□□ -2.26
RXRBP28702 U6.96-201ENST00000636425 70 ntBASIC0.93□□□□□ -2.26
RXRBP28702 MIR20A-201ENST00000362279 71 ntBASIC0.92□□□□□ -2.26
RXRBP28702 RNA5SP63-201ENST00000391225 112 ntBASIC0.92□□□□□ -2.26
RXRBP28702 SNORA62.5-201ENST00000516634 120 ntBASIC0.92□□□□□ -2.26
RXRBP28702 MIR4653-201ENST00000585107 83 ntBASIC0.92□□□□□ -2.26
RXRBP28702 MIR5087-201ENST00000635826 76 ntBASIC0.92□□□□□ -2.26
RXRBP28702 MIR6759-201ENST00000638110 65 ntBASIC0.92□□□□□ -2.26
RXRBP28702 SNORA9.1-201ENST00000362412 131 ntBASIC0.91□□□□□ -2.26
RXRBP28702 RNU6-175P-201ENST00000516896 107 ntBASIC0.91□□□□□ -2.26
RXRBP28702 SNORA40.8-201ENST00000411034 126 ntBASIC0.9□□□□□ -2.27
RXRBP28702 MIR548AG1-201ENST00000579932 66 ntBASIC0.9□□□□□ -2.27
RXRBP28702 RNA5SP499-201ENST00000363982 119 ntBASIC0.89□□□□□ -2.27
RXRBP28702 MIR519A2-201ENST00000384990 87 ntBASIC0.89□□□□□ -2.27
RXRBP28702 MIR501-201ENST00000390204 84 ntBASIC0.89□□□□□ -2.27
RXRBP28702 RPL39P28-201ENST00000465655 155 ntBASIC0.89□□□□□ -2.27
RXRBP28702 RNU6-229P-201ENST00000516614 102 ntBASIC0.89□□□□□ -2.27
RXRBP28702 RNU7-188P-201ENST00000517063 64 ntBASIC0.89□□□□□ -2.27
RXRBP28702 SNORA2A-201ENST00000383885 135 ntBASIC0.88□□□□□ -2.27
RXRBP28702 MIR518A1-201ENST00000385068 85 ntBASIC0.88□□□□□ -2.27
RXRBP28702 MIR1255B2-201ENST00000408618 67 ntBASIC0.88□□□□□ -2.27
RXRBP28702 AL021921.1-201ENST00000442774 93 ntBASIC0.88□□□□□ -2.27
RXRBP28702 MIR4514-201ENST00000581410 57 ntBASIC0.88□□□□□ -2.27
RXRBP28702 MIR4677-201ENST00000584153 80 ntBASIC0.88□□□□□ -2.27
RXRBP28702 CCDC73-201ENST00000335185 3849 ntAPPRIS P2 TSL 2 BASIC0.88□□□□□ -2.27
RXRBP28702 Y_RNA.423-201ENST00000384057 113 ntBASIC0.87□□□□□ -2.27
RXRBP28702 RNU6-518P-201ENST00000516056 96 ntBASIC0.87□□□□□ -2.27
RXRBP28702 MIR6773-201ENST00000612812 74 ntBASIC0.87□□□□□ -2.27
RXRBP28702 Y_RNA.74-201ENST00000362911 99 ntBASIC0.86□□□□□ -2.27
RXRBP28702 TEX15-201ENST00000256246 10110 ntTSL 1 (best) BASIC0.85□□□□□ -2.27
RXRBP28702 SNORD114-29-201ENST00000364819 70 ntBASIC0.85□□□□□ -2.27
RXRBP28702 MIR329-2-201ENST00000385029 84 ntBASIC0.85□□□□□ -2.27
RXRBP28702 MIR146A-201ENST00000385201 99 ntBASIC0.85□□□□□ -2.27
RXRBP28702 snoU13.19-201ENST00000459148 104 ntBASIC0.85□□□□□ -2.27
RXRBP28702 PSMC1P5-201ENST00000512850 177 ntBASIC0.85□□□□□ -2.27
RXRBP28702 RNU6-1312P-201ENST00000362425 108 ntBASIC0.84□□□□□ -2.27
RXRBP28702 Y_RNA.282-201ENST00000364793 102 ntBASIC0.84□□□□□ -2.27
RXRBP28702 Y_RNA.722-201ENST00000517279 114 ntBASIC0.84□□□□□ -2.27
RXRBP28702 MIR548AD-201ENST00000584780 82 ntBASIC0.84□□□□□ -2.27
RXRBP28702 SNORD116-16-201ENST00000384533 92 ntBASIC0.83□□□□□ -2.28
RXRBP28702 RNU6-1184P-201ENST00000384588 108 ntBASIC0.83□□□□□ -2.28
RXRBP28702 RNU6-848P-201ENST00000515948 107 ntBASIC0.83□□□□□ -2.28
RXRBP28702 RNU6-617P-201ENST00000516147 107 ntBASIC0.83□□□□□ -2.28
RXRBP28702 RNU6-473P-201ENST00000516164 107 ntBASIC0.83□□□□□ -2.28
RXRBP28702 RNU6-1049P-201ENST00000516414 107 ntBASIC0.83□□□□□ -2.28
RXRBP28702 RNU6-936P-201ENST00000384005 107 ntBASIC0.82□□□□□ -2.28
RXRBP28702 RNU6-520P-201ENST00000384717 104 ntBASIC0.82□□□□□ -2.28
RXRBP28702 MIR3925-201ENST00000584674 77 ntBASIC0.82□□□□□ -2.28
RXRBP28702 U7.6-201ENST00000610841 64 ntBASIC0.82□□□□□ -2.28
RXRBP28702 RN7SL660P-201ENST00000614852 299 ntBASIC0.82□□□□□ -2.28
RXRBP28702 RNU6-502P-201ENST00000362419 108 ntBASIC0.81□□□□□ -2.28
RXRBP28702 MIRLET7B-201ENST00000385140 83 ntBASIC0.81□□□□□ -2.28
RXRBP28702 RNU6ATAC31P-201ENST00000408513 126 ntBASIC0.81□□□□□ -2.28
RXRBP28702 SNORD115-25-201ENST00000362619 82 ntBASIC0.8□□□□□ -2.28
RXRBP28702 SNORD71-201ENST00000411292 86 ntBASIC0.8□□□□□ -2.28
RXRBP28702 SNORD2-201ENST00000459163 69 ntBASIC0.8□□□□□ -2.28
RXRBP28702 RNU6-231P-201ENST00000517122 103 ntBASIC0.8□□□□□ -2.28
RXRBP28702 MIR5589-201ENST00000579442 60 ntBASIC0.8□□□□□ -2.28
RXRBP28702 AC023932.2-201ENST00000603176 175 ntBASIC0.8□□□□□ -2.28
RXRBP28702 RNA5SP331-201ENST00000364986 107 ntBASIC0.79□□□□□ -2.28
RXRBP28702 MIR760-201ENST00000390220 80 ntBASIC0.79□□□□□ -2.28
RXRBP28702 ZBTB41-201ENST00000367405 8478 ntAPPRIS P1 TSL 1 (best) BASIC0.79□□□□□ -2.28
RXRBP28702 RNU6-1036P-201ENST00000383959 104 ntBASIC0.78□□□□□ -2.28
RXRBP28702 MIR876-201ENST00000401147 81 ntBASIC0.78□□□□□ -2.28
RXRBP28702 RNU7-154P-201ENST00000516194 62 ntBASIC0.78□□□□□ -2.28
RXRBP28702 RNU6-808P-201ENST00000391233 108 ntBASIC0.76□□□□□ -2.29
RXRBP28702 AC084368.1-201ENST00000620935 65 ntBASIC0.76□□□□□ -2.29
RXRBP28702 MIR499B-201ENST00000636498 73 ntBASIC0.76□□□□□ -2.29
RXRBP28702 SNORD44.1-201ENST00000363202 61 ntBASIC0.75□□□□□ -2.29
RXRBP28702 RNA5SP128-201ENST00000365305 116 ntBASIC0.75□□□□□ -2.29
RXRBP28702 SNORA40.16-201ENST00000517238 121 ntBASIC0.75□□□□□ -2.29
RXRBP28702 ZNF518A-209ENST00000614149 7911 ntAPPRIS P1 TSL 5 BASIC0.74□□□□□ -2.29
RXRBP28702 MIR527-201ENST00000385244 85 ntBASIC0.74□□□□□ -2.29
RXRBP28702 RNU6ATAC29P-201ENST00000408088 125 ntBASIC0.74□□□□□ -2.29
RXRBP28702 RNU6-863P-201ENST00000515989 104 ntBASIC0.74□□□□□ -2.29
RXRBP28702 RNU6-782P-201ENST00000516852 104 ntBASIC0.74□□□□□ -2.29
RXRBP28702 RNU7-119P-201ENST00000459279 63 ntBASIC0.73□□□□□ -2.29
RXRBP28702 MIR4802-201ENST00000581881 80 ntBASIC0.73□□□□□ -2.29
Retrieved 100 of 98,524 protein–RNA pairs in 195.7 ms