Protein–RNA interactions for Protein: P12109

COL6A1, Collagen alpha-1(VI) chain, humanhuman

Predictions only

Length 1,028 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1P12109 AC084368.1-201ENST00000620935 65 ntBASIC0.55□□□□□ -2.32
COL6A1P12109 SNORD44.1-201ENST00000363202 61 ntBASIC0.54□□□□□ -2.32
COL6A1P12109 AC114737.2-201ENST00000421583 173 ntBASIC0.54□□□□□ -2.32
COL6A1P12109 RNU7-188P-201ENST00000517063 64 ntBASIC0.54□□□□□ -2.32
COL6A1P12109 AC090625.1-201ENST00000357130 210 ntBASIC0.53□□□□□ -2.32
COL6A1P12109 RNU6-471P-201ENST00000383944 106 ntBASIC0.53□□□□□ -2.32
COL6A1P12109 MIR4514-201ENST00000581410 57 ntBASIC0.53□□□□□ -2.32
COL6A1P12109 AC023932.2-201ENST00000603176 175 ntBASIC0.53□□□□□ -2.32
COL6A1P12109 RNA5SP215-201ENST00000363440 122 ntBASIC0.52□□□□□ -2.33
COL6A1P12109 RNA5SP63-201ENST00000391225 112 ntBASIC0.52□□□□□ -2.33
COL6A1P12109 AL157398.1-201ENST00000452981 186 ntBASIC0.52□□□□□ -2.33
COL6A1P12109 RNU6-1089P-201ENST00000516473 104 ntBASIC0.52□□□□□ -2.33
COL6A1P12109 AC103706.3-201ENST00000636297 85 ntBASIC0.52□□□□□ -2.33
COL6A1P12109 SNORA9.1-201ENST00000362412 131 ntBASIC0.51□□□□□ -2.33
COL6A1P12109 SNORA33.1-201ENST00000364957 130 ntBASIC0.51□□□□□ -2.33
COL6A1P12109 MIR548C-201ENST00000384815 97 ntBASIC0.51□□□□□ -2.33
COL6A1P12109 SNORA68.3-201ENST00000515906 83 ntBASIC0.51□□□□□ -2.33
COL6A1P12109 RNU6-542P-201ENST00000516405 103 ntBASIC0.51□□□□□ -2.33
COL6A1P12109 U6.96-201ENST00000636425 70 ntBASIC0.51□□□□□ -2.33
COL6A1P12109 Y_RNA.375-201ENST00000365625 101 ntBASIC0.5□□□□□ -2.33
COL6A1P12109 SNORA50A-201ENST00000384225 134 ntBASIC0.5□□□□□ -2.33
COL6A1P12109 LINC00345-201ENST00000443679 285 ntTSL 5 BASIC0.5□□□□□ -2.33
COL6A1P12109 RNA5SP285-201ENST00000516619 119 ntBASIC0.5□□□□□ -2.33
COL6A1P12109 SNORA62.5-201ENST00000516634 120 ntBASIC0.5□□□□□ -2.33
COL6A1P12109 RNU6-302P-201ENST00000365249 107 ntBASIC0.49□□□□□ -2.33
COL6A1P12109 MIR4511-201ENST00000582784 87 ntBASIC0.49□□□□□ -2.33
COL6A1P12109 MIR499B-201ENST00000636498 73 ntBASIC0.49□□□□□ -2.33
COL6A1P12109 MIRLET7D-201ENST00000362263 87 ntBASIC0.48□□□□□ -2.33
COL6A1P12109 SNORA75.1-201ENST00000391130 148 ntBASIC0.48□□□□□ -2.33
COL6A1P12109 MIR1265-201ENST00000408444 86 ntBASIC0.48□□□□□ -2.33
COL6A1P12109 MIR103A1-201ENST00000362165 78 ntBASIC0.46□□□□□ -2.34
COL6A1P12109 MIR876-201ENST00000401147 81 ntBASIC0.46□□□□□ -2.34
COL6A1P12109 KIF20B-201ENST00000260753 6306 ntAPPRIS P3 TSL 1 (best) BASIC0.46□□□□□ -2.34
COL6A1P12109 RNA5SP299-201ENST00000391203 116 ntBASIC0.45□□□□□ -2.34
COL6A1P12109 RNU6-175P-201ENST00000516896 107 ntBASIC0.44□□□□□ -2.34
COL6A1P12109 SCARNA11.2-201ENST00000517183 154 ntBASIC0.44□□□□□ -2.34
COL6A1P12109 MIR3925-201ENST00000584674 77 ntBASIC0.44□□□□□ -2.34
COL6A1P12109 RNU6-1036P-201ENST00000383959 104 ntBASIC0.43□□□□□ -2.34
COL6A1P12109 MIR517B-201ENST00000385102 67 ntBASIC0.43□□□□□ -2.34
COL6A1P12109 RNU6ATAC4P-201ENST00000387446 126 ntBASIC0.43□□□□□ -2.34
COL6A1P12109 RNA5SP134-201ENST00000516492 96 ntBASIC0.43□□□□□ -2.34
COL6A1P12109 MIR548V-201ENST00000584165 80 ntBASIC0.43□□□□□ -2.34
COL6A1P12109 U2.7-201ENST00000619197 100 ntBASIC0.43□□□□□ -2.34
COL6A1P12109 CYP3A54P-201ENST00000566950 75 ntBASIC0.42□□□□□ -2.34
COL6A1P12109 RN7SL660P-201ENST00000614852 299 ntBASIC0.42□□□□□ -2.34
COL6A1P12109 MIR6718-201ENST00000616153 80 ntBASIC0.42□□□□□ -2.34
COL6A1P12109 AL627230.5-201ENST00000619807 58 ntBASIC0.42□□□□□ -2.34
COL6A1P12109 RNU6-815P-201ENST00000384080 113 ntBASIC0.41□□□□□ -2.34
COL6A1P12109 RNU6-127P-201ENST00000390897 107 ntBASIC0.41□□□□□ -2.34
COL6A1P12109 RNU6-782P-201ENST00000516852 104 ntBASIC0.41□□□□□ -2.34
COL6A1P12109 MIR6759-201ENST00000638110 65 ntBASIC0.41□□□□□ -2.34
COL6A1P12109 RNU6-1327P-201ENST00000365302 105 ntBASIC0.4□□□□□ -2.35
COL6A1P12109 AL021921.1-201ENST00000442774 93 ntBASIC0.4□□□□□ -2.35
COL6A1P12109 SCARNA21.1-201ENST00000515996 128 ntBASIC0.4□□□□□ -2.35
COL6A1P12109 AC069113.3-201ENST00000521019 150 ntBASIC0.4□□□□□ -2.35
COL6A1P12109 MIR4636-201ENST00000582271 80 ntBASIC0.4□□□□□ -2.35
COL6A1P12109 SNORD115-25-201ENST00000362619 82 ntBASIC0.39□□□□□ -2.35
COL6A1P12109 RNU6-698P-201ENST00000363523 107 ntBASIC0.39□□□□□ -2.35
COL6A1P12109 RNU6-34P-201ENST00000364874 107 ntBASIC0.39□□□□□ -2.35
COL6A1P12109 MIR106A-201ENST00000384870 81 ntBASIC0.39□□□□□ -2.35
COL6A1P12109 SNORA49-201ENST00000386157 136 ntBASIC0.39□□□□□ -2.35
COL6A1P12109 SNORD113-2-201ENST00000391082 72 ntBASIC0.39□□□□□ -2.35
COL6A1P12109 RNU7-174P-201ENST00000516248 59 ntBASIC0.39□□□□□ -2.35
COL6A1P12109 MIR6773-201ENST00000612812 74 ntBASIC0.39□□□□□ -2.35
COL6A1P12109 AC108740.1-201ENST00000498629 225 ntBASIC0.37□□□□□ -2.35
COL6A1P12109 RNA5SP98-201ENST00000363158 137 ntBASIC0.36□□□□□ -2.35
COL6A1P12109 SNORA25.5-201ENST00000363782 126 ntBASIC0.36□□□□□ -2.35
COL6A1P12109 MIR630-201ENST00000384957 97 ntBASIC0.36□□□□□ -2.35
COL6A1P12109 MIR329-2-201ENST00000385029 84 ntBASIC0.36□□□□□ -2.35
COL6A1P12109 MIR643-201ENST00000385267 97 ntBASIC0.36□□□□□ -2.35
COL6A1P12109 MIR892B-201ENST00000401279 77 ntBASIC0.36□□□□□ -2.35
COL6A1P12109 MIR1255B2-201ENST00000408618 67 ntBASIC0.36□□□□□ -2.35
COL6A1P12109 AC110620.1-201ENST00000416042 228 ntBASIC0.36□□□□□ -2.35
COL6A1P12109 RNU6-518P-201ENST00000516056 96 ntBASIC0.36□□□□□ -2.35
COL6A1P12109 RNU6ATAC22P-201ENST00000516794 89 ntBASIC0.36□□□□□ -2.35
COL6A1P12109 RNU6-669P-201ENST00000365575 107 ntBASIC0.35□□□□□ -2.35
COL6A1P12109 MIR9-2-201ENST00000384838 87 ntBASIC0.35□□□□□ -2.35
COL6A1P12109 RNA5SP470-201ENST00000516463 106 ntBASIC0.35□□□□□ -2.35
COL6A1P12109 AC090617.8-201ENST00000623339 167 ntBASIC0.35□□□□□ -2.35
COL6A1P12109 MIR4315-1-201ENST00000636800 73 ntBASIC0.35□□□□□ -2.35
COL6A1P12109 MIR4315-2-201ENST00000640925 73 ntBASIC0.35□□□□□ -2.35
COL6A1P12109 RNU6-502P-201ENST00000362419 108 ntBASIC0.34□□□□□ -2.36
COL6A1P12109 TRAJ9-201ENST00000390528 61 ntAPPRIS P1 BASIC0.34□□□□□ -2.36
COL6A1P12109 RNU6-337P-201ENST00000391243 106 ntBASIC0.34□□□□□ -2.36
COL6A1P12109 AP000676.1-201ENST00000533307 52 ntBASIC0.34□□□□□ -2.36
COL6A1P12109 RNU6-92P-201ENST00000605893 104 ntBASIC0.34□□□□□ -2.36
COL6A1P12109 Y_RNA.246-201ENST00000364495 108 ntBASIC0.33□□□□□ -2.36
COL6A1P12109 MIRLET7B-201ENST00000385140 83 ntBASIC0.33□□□□□ -2.36
COL6A1P12109 RNU6-940P-201ENST00000363433 104 ntBASIC0.32□□□□□ -2.36
COL6A1P12109 MIR610-201ENST00000385139 96 ntBASIC0.32□□□□□ -2.36
COL6A1P12109 MIR6514-201ENST00000622549 70 ntBASIC0.32□□□□□ -2.36
COL6A1P12109 RNU7-154P-201ENST00000516194 62 ntBASIC0.31□□□□□ -2.36
COL6A1P12109 MIR5589-201ENST00000579442 60 ntBASIC0.31□□□□□ -2.36
COL6A1P12109 MIR4802-201ENST00000581881 80 ntBASIC0.31□□□□□ -2.36
COL6A1P12109 RNA5SP192-201ENST00000364404 120 ntBASIC0.3□□□□□ -2.36
COL6A1P12109 AC008883.1-201ENST00000506562 193 ntTSL 3 BASIC0.3□□□□□ -2.36
COL6A1P12109 CR383656.4-201ENST00000546909 122 ntBASIC0.3□□□□□ -2.36
COL6A1P12109 MIR5190-201ENST00000581537 80 ntBASIC0.3□□□□□ -2.36
COL6A1P12109 U4.4-201ENST00000620626 117 ntBASIC0.3□□□□□ -2.36
COL6A1P12109 MIR519A2-201ENST00000384990 87 ntBASIC0.29□□□□□ -2.36
Retrieved 100 of 98,524 protein–RNA pairs in 8.8 ms