Protein–RNA interactions for Protein: P09016

HOXD4, Homeobox protein Hox-D4, humanhuman

Predicted RBP Predictions only

Length 255 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD4P09016 AL590491.3-201ENST00000610731 82 ntBASIC-0.25□□□□□ -2.45
HOXD4P09016 U6.96-201ENST00000636425 70 ntBASIC-0.25□□□□□ -2.45
HOXD4P09016 SNORA33.1-201ENST00000364957 130 ntBASIC-0.26□□□□□ -2.45
HOXD4P09016 MIRLET7B-201ENST00000385140 83 ntBASIC-0.26□□□□□ -2.45
HOXD4P09016 RNA5SP300-201ENST00000391197 107 ntBASIC-0.26□□□□□ -2.45
HOXD4P09016 snoU13.19-201ENST00000459148 104 ntBASIC-0.26□□□□□ -2.45
HOXD4P09016 AC008883.1-201ENST00000506562 193 ntTSL 3 BASIC-0.26□□□□□ -2.45
HOXD4P09016 MIR4263-201ENST00000584745 83 ntBASIC-0.26□□□□□ -2.45
HOXD4P09016 SYCP2-202ENST00000371001 5479 ntAPPRIS P2 TSL 1 (best) BASIC-0.26□□□□□ -2.45
HOXD4P09016 RNU6-330P-201ENST00000363015 107 ntBASIC-0.27□□□□□ -2.45
HOXD4P09016 Y_RNA.219-201ENST00000364232 113 ntBASIC-0.27□□□□□ -2.45
HOXD4P09016 SNORA15B-2-201ENST00000384058 135 ntBASIC-0.27□□□□□ -2.45
HOXD4P09016 SNORA15B-1-201ENST00000384334 135 ntBASIC-0.27□□□□□ -2.45
HOXD4P09016 RNU6-242P-201ENST00000384359 107 ntBASIC-0.27□□□□□ -2.45
HOXD4P09016 SNORD56B-201ENST00000384713 71 ntBASIC-0.27□□□□□ -2.45
HOXD4P09016 MIR604-201ENST00000384880 94 ntBASIC-0.27□□□□□ -2.45
HOXD4P09016 AC074348.1-201ENST00000426503 132 ntBASIC-0.27□□□□□ -2.45
HOXD4P09016 AC062037.1-201ENST00000605302 128 ntBASIC-0.27□□□□□ -2.45
HOXD4P09016 uc_338.36-201ENST00000622331 158 ntBASIC-0.27□□□□□ -2.45
HOXD4P09016 AC090617.8-201ENST00000623339 167 ntBASIC-0.27□□□□□ -2.45
HOXD4P09016 MIR4788-201ENST00000639104 80 ntBASIC-0.27□□□□□ -2.45
HOXD4P09016 SNORD114-28-201ENST00000363610 72 ntBASIC-0.28□□□□□ -2.45
HOXD4P09016 RNA5SP368-201ENST00000364298 116 ntBASIC-0.28□□□□□ -2.45
HOXD4P09016 RNU6-1276P-201ENST00000365372 104 ntBASIC-0.28□□□□□ -2.45
HOXD4P09016 RNU6-901P-201ENST00000384593 106 ntBASIC-0.28□□□□□ -2.45
HOXD4P09016 TRAJ28-201ENST00000390509 66 ntAPPRIS P1 BASIC-0.28□□□□□ -2.45
HOXD4P09016 RNU6-320P-201ENST00000516511 106 ntBASIC-0.28□□□□□ -2.45
HOXD4P09016 MIR8064-201ENST00000612863 90 ntBASIC-0.28□□□□□ -2.45
HOXD4P09016 RNU6-315P-201ENST00000362666 107 ntBASIC-0.29□□□□□ -2.46
HOXD4P09016 RNU6-1255P-201ENST00000363434 112 ntBASIC-0.29□□□□□ -2.46
HOXD4P09016 RNU6-973P-201ENST00000364690 107 ntBASIC-0.29□□□□□ -2.46
HOXD4P09016 SNORA8.1-201ENST00000384250 140 ntBASIC-0.29□□□□□ -2.46
HOXD4P09016 AL445193.1-201ENST00000441183 141 ntBASIC-0.29□□□□□ -2.46
HOXD4P09016 MIR4484-201ENST00000582855 83 ntBASIC-0.29□□□□□ -2.46
HOXD4P09016 MIR101-1-201ENST00000362265 75 ntBASIC-0.3□□□□□ -2.46
HOXD4P09016 SNORD114-15-201ENST00000364687 72 ntBASIC-0.3□□□□□ -2.46
HOXD4P09016 RNU6-820P-201ENST00000384273 107 ntBASIC-0.3□□□□□ -2.46
HOXD4P09016 RNA5SP66-201ENST00000517178 101 ntBASIC-0.3□□□□□ -2.46
HOXD4P09016 MIR6739-201ENST00000622461 75 ntBASIC-0.3□□□□□ -2.46
HOXD4P09016 AL391099.1-201ENST00000624635 187 ntBASIC-0.3□□□□□ -2.46
HOXD4P09016 Y_RNA.43-201ENST00000362670 111 ntBASIC-0.31□□□□□ -2.46
HOXD4P09016 SNORD114-11-201ENST00000363738 75 ntBASIC-0.31□□□□□ -2.46
HOXD4P09016 RNA5SP275-201ENST00000363936 118 ntBASIC-0.31□□□□□ -2.46
HOXD4P09016 SNORD115-23-201ENST00000364461 82 ntBASIC-0.31□□□□□ -2.46
HOXD4P09016 MIR521-2-201ENST00000384818 87 ntBASIC-0.31□□□□□ -2.46
HOXD4P09016 RNU6-380P-201ENST00000410207 107 ntBASIC-0.31□□□□□ -2.46
HOXD4P09016 RNU6-1133P-201ENST00000410963 100 ntBASIC-0.31□□□□□ -2.46
HOXD4P09016 MIR3675-201ENST00000583661 73 ntBASIC-0.31□□□□□ -2.46
HOXD4P09016 MIR4712-201ENST00000583750 82 ntBASIC-0.31□□□□□ -2.46
HOXD4P09016 SNORD73B-201ENST00000364394 72 ntBASIC-0.32□□□□□ -2.46
HOXD4P09016 RNU6-1162P-201ENST00000384443 104 ntBASIC-0.32□□□□□ -2.46
HOXD4P09016 AC096531.1-201ENST00000419107 107 ntBASIC-0.32□□□□□ -2.46
HOXD4P09016 RNU6-807P-201ENST00000516805 107 ntBASIC-0.32□□□□□ -2.46
HOXD4P09016 AC108676.2-201ENST00000605225 163 ntBASIC-0.32□□□□□ -2.46
HOXD4P09016 snoR1.1-201ENST00000628177 80 ntBASIC-0.32□□□□□ -2.46
HOXD4P09016 MIR1245B-201ENST00000636115 69 ntBASIC-0.32□□□□□ -2.46
HOXD4P09016 MIR1297-201ENST00000637311 77 ntBASIC-0.32□□□□□ -2.46
HOXD4P09016 RNU6-1184P-201ENST00000384588 108 ntBASIC-0.33□□□□□ -2.46
HOXD4P09016 RNA5SP451-201ENST00000410588 110 ntBASIC-0.33□□□□□ -2.46
HOXD4P09016 MIR4666B-201ENST00000578142 81 ntBASIC-0.33□□□□□ -2.46
HOXD4P09016 MIR4280-201ENST00000582178 76 ntBASIC-0.33□□□□□ -2.46
HOXD4P09016 MIR5704-201ENST00000584029 77 ntBASIC-0.33□□□□□ -2.46
HOXD4P09016 Y_RNA.313-201ENST00000365095 103 ntBASIC-0.34□□□□□ -2.46
HOXD4P09016 RNU6-1152P-201ENST00000384576 107 ntBASIC-0.34□□□□□ -2.46
HOXD4P09016 CYP3A54P-201ENST00000566950 75 ntBASIC-0.34□□□□□ -2.46
HOXD4P09016 MIR4432-201ENST00000581823 84 ntBASIC-0.34□□□□□ -2.46
HOXD4P09016 AL627230.5-201ENST00000619807 58 ntBASIC-0.34□□□□□ -2.46
HOXD4P09016 AC093726.3-201ENST00000637588 150 ntBASIC-0.34□□□□□ -2.46
HOXD4P09016 RNU6-1094P-201ENST00000362416 104 ntBASIC-0.35□□□□□ -2.47
HOXD4P09016 RNU6-787P-201ENST00000384032 107 ntBASIC-0.35□□□□□ -2.47
HOXD4P09016 RNU6-604P-201ENST00000390917 100 ntBASIC-0.35□□□□□ -2.47
HOXD4P09016 MIR1255B2-201ENST00000408618 67 ntBASIC-0.35□□□□□ -2.47
HOXD4P09016 RNU6-656P-201ENST00000516785 107 ntBASIC-0.35□□□□□ -2.47
HOXD4P09016 Y_RNA.94-201ENST00000363068 106 ntBASIC-0.36□□□□□ -2.47
HOXD4P09016 SNORD95.1-201ENST00000364099 68 ntBASIC-0.36□□□□□ -2.47
HOXD4P09016 RNU6-30P-201ENST00000384561 107 ntBASIC-0.36□□□□□ -2.47
HOXD4P09016 SNORA32.3-201ENST00000384772 121 ntBASIC-0.36□□□□□ -2.47
HOXD4P09016 RPS29P8-201ENST00000445109 171 ntBASIC-0.36□□□□□ -2.47
HOXD4P09016 MIR6851-201ENST00000617060 67 ntBASIC-0.36□□□□□ -2.47
HOXD4P09016 SNORD45.1-201ENST00000363181 77 ntBASIC-0.37□□□□□ -2.47
HOXD4P09016 RNU6-645P-201ENST00000364649 106 ntBASIC-0.37□□□□□ -2.47
HOXD4P09016 RNY4P29-201ENST00000410801 97 ntBASIC-0.37□□□□□ -2.47
HOXD4P09016 SNORD38.3-201ENST00000516599 73 ntBASIC-0.37□□□□□ -2.47
HOXD4P09016 MIR8068-201ENST00000618032 68 ntBASIC-0.37□□□□□ -2.47
HOXD4P09016 SNORA26.2-201ENST00000390922 122 ntBASIC-0.38□□□□□ -2.47
HOXD4P09016 Y_RNA.610-201ENST00000410681 103 ntBASIC-0.38□□□□□ -2.47
HOXD4P09016 SCARNA18B-201ENST00000458806 135 ntBASIC-0.38□□□□□ -2.47
HOXD4P09016 AC114755.3-201ENST00000481111 251 ntBASIC-0.38□□□□□ -2.47
HOXD4P09016 Y_RNA.696-201ENST00000516725 107 ntBASIC-0.38□□□□□ -2.47
HOXD4P09016 RNA5SP169-201ENST00000517268 117 ntBASIC-0.38□□□□□ -2.47
HOXD4P09016 AL078612.1-201ENST00000533009 150 ntTSL 5 BASIC-0.38□□□□□ -2.47
HOXD4P09016 AL353803.5-201ENST00000599815 141 ntBASIC-0.38□□□□□ -2.47
HOXD4P09016 MIR6854-201ENST00000614935 69 ntBASIC-0.38□□□□□ -2.47
HOXD4P09016 Y_RNA.388-201ENST00000383919 113 ntBASIC-0.39□□□□□ -2.47
HOXD4P09016 Y_RNA.391-201ENST00000383933 94 ntBASIC-0.39□□□□□ -2.47
HOXD4P09016 MIR224-201ENST00000384889 81 ntBASIC-0.39□□□□□ -2.47
HOXD4P09016 TRAJ53-201ENST00000390485 66 ntAPPRIS P1 BASIC-0.39□□□□□ -2.47
HOXD4P09016 MIR548AZ-201ENST00000616567 95 ntBASIC-0.39□□□□□ -2.47
HOXD4P09016 MIR664A-201ENST00000626086 82 ntBASIC-0.39□□□□□ -2.47
HOXD4P09016 SNORD14C-201ENST00000365382 88 ntBASIC-0.4□□□□□ -2.47
Retrieved 100 of 98,524 protein–RNA pairs in 177.3 ms