Protein–RNA interactions for Protein: O43196

MSH5, MutS protein homolog 5, humanhuman

Predictions only

Length 834 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5O43196 LINC00345-201ENST00000443679 285 ntTSL 5 BASIC2.74□□□□□ -1.97
MSH5O43196 DYNC2H1-202ENST00000375735 13678 ntAPPRIS ALT1 TSL 1 (best) BASIC2.74□□□□□ -1.97
MSH5O43196 RNU6ATAC38P-201ENST00000408119 126 ntBASIC2.73□□□□□ -1.97
MSH5O43196 RNU6-1232P-201ENST00000516299 86 ntBASIC2.73□□□□□ -1.97
MSH5O43196 AP002795.1-201ENST00000534879 84 ntBASIC2.73□□□□□ -1.97
MSH5O43196 Y_RNA.355-201ENST00000365462 98 ntBASIC2.72□□□□□ -1.97
MSH5O43196 RNA5SP200-201ENST00000516360 103 ntBASIC2.72□□□□□ -1.97
MSH5O43196 snoU13.31-201ENST00000607291 104 ntBASIC2.72□□□□□ -1.97
MSH5O43196 SMAD5-AS1_3.1-201ENST00000614187 124 ntBASIC2.72□□□□□ -1.97
MSH5O43196 MIR378A-201ENST00000362177 66 ntBASIC2.71□□□□□ -1.98
MSH5O43196 RNU6-229P-201ENST00000516614 102 ntBASIC2.71□□□□□ -1.98
MSH5O43196 FSIP2-202ENST00000424728 20788 ntAPPRIS P2 TSL 5 BASIC2.71□□□□□ -1.98
MSH5O43196 Y_RNA.129-201ENST00000363392 110 ntBASIC2.7□□□□□ -1.98
MSH5O43196 RNA5SP364-201ENST00000516938 78 ntBASIC2.7□□□□□ -1.98
MSH5O43196 AC011195.1-201ENST00000578177 177 ntBASIC2.7□□□□□ -1.98
MSH5O43196 MIR4422-201ENST00000581938 83 ntBASIC2.7□□□□□ -1.98
MSH5O43196 Y_RNA.783-201ENST00000613546 102 ntBASIC2.7□□□□□ -1.98
MSH5O43196 SNORA2A-201ENST00000383885 135 ntBASIC2.69□□□□□ -1.98
MSH5O43196 Z82195.2-201ENST00000612348 18351 ntBASIC2.68□□□□□ -1.98
MSH5O43196 SCN7A-201ENST00000409855 7183 ntAPPRIS P1 TSL 1 (best) BASIC2.67□□□□□ -1.98
MSH5O43196 MIR581-201ENST00000384895 96 ntBASIC2.67□□□□□ -1.98
MSH5O43196 MIR124-2-201ENST00000385081 109 ntBASIC2.64□□□□□ -1.99
MSH5O43196 MIR501-201ENST00000390204 84 ntBASIC2.64□□□□□ -1.99
MSH5O43196 RNU6-321P-201ENST00000410912 106 ntBASIC2.64□□□□□ -1.99
MSH5O43196 MBNL3-212ENST00000538204 11294 ntTSL 1 (best) BASIC2.63□□□□□ -1.99
MSH5O43196 Y_RNA.223-201ENST00000364290 113 ntBASIC2.63□□□□□ -1.99
MSH5O43196 Y_RNA.335-201ENST00000365299 96 ntBASIC2.63□□□□□ -1.99
MSH5O43196 SNORD45C-201ENST00000383893 79 ntBASIC2.63□□□□□ -1.99
MSH5O43196 MIR499A-201ENST00000384903 122 ntBASIC2.63□□□□□ -1.99
MSH5O43196 MIR518A1-201ENST00000385068 85 ntBASIC2.63□□□□□ -1.99
MSH5O43196 RNU4-54P-201ENST00000516428 129 ntBASIC2.63□□□□□ -1.99
MSH5O43196 MIR8070-201ENST00000616510 88 ntBASIC2.63□□□□□ -1.99
MSH5O43196 RNA5SP489-201ENST00000410986 109 ntBASIC2.62□□□□□ -1.99
MSH5O43196 MIR3198-2-201ENST00000577868 80 ntBASIC2.62□□□□□ -1.99
MSH5O43196 MIR6755-201ENST00000619993 66 ntBASIC2.62□□□□□ -1.99
MSH5O43196 RNU4-45P-201ENST00000365469 141 ntBASIC2.61□□□□□ -1.99
MSH5O43196 TRMT112P2-201ENST00000512910 132 ntBASIC2.61□□□□□ -1.99
MSH5O43196 SNORA42.1-201ENST00000363515 137 ntBASIC2.6□□□□□ -1.99
MSH5O43196 RNU6-973P-201ENST00000364690 107 ntBASIC2.6□□□□□ -1.99
MSH5O43196 Y_RNA.423-201ENST00000384057 113 ntBASIC2.6□□□□□ -1.99
MSH5O43196 SNORD13-201ENST00000459299 104 ntBASIC2.6□□□□□ -1.99
MSH5O43196 RNA5SP190-201ENST00000365222 118 ntBASIC2.59□□□□□ -1.99
MSH5O43196 RNA5SP182-201ENST00000516064 82 ntBASIC2.59□□□□□ -1.99
MSH5O43196 AC013734.1-201ENST00000619329 111 ntBASIC2.59□□□□□ -1.99
MSH5O43196 MIR489-201ENST00000384923 84 ntBASIC2.58□□□□□ -2
MSH5O43196 SNORA25.15-201ENST00000516487 89 ntBASIC2.58□□□□□ -2
MSH5O43196 MIR5704-201ENST00000584029 77 ntBASIC2.58□□□□□ -2
MSH5O43196 MIR8068-201ENST00000618032 68 ntBASIC2.58□□□□□ -2
MSH5O43196 MIR5683-201ENST00000636514 76 ntBASIC2.58□□□□□ -2
MSH5O43196 HMGN2P19-201ENST00000425149 265 ntBASIC2.57□□□□□ -2
MSH5O43196 SNORD124-201ENST00000459577 104 ntBASIC2.57□□□□□ -2
MSH5O43196 MIR4303-201ENST00000581299 66 ntBASIC2.57□□□□□ -2
MSH5O43196 IL6ST-202ENST00000381286 201 ntTSL 1 (best) BASIC2.56□□□□□ -2
MSH5O43196 SNORA48.3-201ENST00000391081 134 ntBASIC2.56□□□□□ -2
MSH5O43196 SNORD99-201ENST00000408612 74 ntBASIC2.56□□□□□ -2
MSH5O43196 FTX_4.1-201ENST00000616291 147 ntBASIC2.56□□□□□ -2
MSH5O43196 RNU6-1169P-201ENST00000363537 103 ntBASIC2.55□□□□□ -2
MSH5O43196 MIR106A-201ENST00000384870 81 ntBASIC2.55□□□□□ -2
MSH5O43196 AC003989.2-201ENST00000440224 169 ntBASIC2.55□□□□□ -2
MSH5O43196 MIR8081-201ENST00000611533 95 ntBASIC2.55□□□□□ -2
MSH5O43196 ZDBF2-202ENST00000611847 9890 ntTSL 5 BASIC2.54□□□□□ -2
MSH5O43196 TRAJ49-201ENST00000390488 56 ntAPPRIS P1 BASIC2.54□□□□□ -2
MSH5O43196 RNU7-55P-201ENST00000459426 62 ntBASIC2.54□□□□□ -2
MSH5O43196 AC087343.1-201ENST00000477341 475 ntBASIC2.54□□□□□ -2
MSH5O43196 AC096531.1-201ENST00000419107 107 ntBASIC2.53□□□□□ -2
MSH5O43196 SNORA25.18-201ENST00000607153 114 ntBASIC2.53□□□□□ -2
MSH5O43196 hsa-mir-3158-1.1-201ENST00000637571 81 ntBASIC2.53□□□□□ -2
MSH5O43196 TBL1XR1-208ENST00000430069 7948 ntAPPRIS P1 TSL 1 (best) BASIC2.53□□□□□ -2
MSH5O43196 CALCRL-202ENST00000409998 5223 ntAPPRIS P1 TSL 5 BASIC2.52□□□□□ -2.01
MSH5O43196 MIR5087-201ENST00000635826 76 ntBASIC2.52□□□□□ -2.01
MSH5O43196 FSD1L-201ENST00000374707 7062 ntTSL 1 (best) BASIC2.52□□□□□ -2.01
MSH5O43196 RNA5SP517-201ENST00000364724 117 ntBASIC2.51□□□□□ -2.01
MSH5O43196 TRAJ11-201ENST00000390526 60 ntAPPRIS P1 BASIC2.51□□□□□ -2.01
MSH5O43196 MIR3925-201ENST00000584674 77 ntBASIC2.51□□□□□ -2.01
MSH5O43196 U6.97-201ENST00000636904 101 ntBASIC2.51□□□□□ -2.01
MSH5O43196 MIR876-201ENST00000401147 81 ntBASIC2.5□□□□□ -2.01
MSH5O43196 AP1B1P2-201ENST00000416196 106 ntBASIC2.5□□□□□ -2.01
MSH5O43196 TRAJ3-201ENST00000390534 62 ntAPPRIS P1 BASIC2.49□□□□□ -2.01
MSH5O43196 RNA5SP222-201ENST00000411039 105 ntBASIC2.49□□□□□ -2.01
MSH5O43196 ST7-OT3_1.1-201ENST00000619607 74 ntBASIC2.49□□□□□ -2.01
MSH5O43196 RNA5SP98-201ENST00000363158 137 ntBASIC2.48□□□□□ -2.01
MSH5O43196 SNORD48-201ENST00000364953 64 ntBASIC2.48□□□□□ -2.01
MSH5O43196 MIR17-201ENST00000385012 84 ntBASIC2.48□□□□□ -2.01
MSH5O43196 MIR548AJ2-201ENST00000408539 92 ntBASIC2.48□□□□□ -2.01
MSH5O43196 BX248123.2-201ENST00000606318 124 ntBASIC2.48□□□□□ -2.01
MSH5O43196 RNA5SP233-201ENST00000459153 113 ntBASIC2.47□□□□□ -2.01
MSH5O43196 RNA5SP327-201ENST00000362494 101 ntBASIC2.46□□□□□ -2.02
MSH5O43196 ZGRF1-208ENST00000505019 6652 ntAPPRIS P1 TSL 5 BASIC2.46□□□□□ -2.02
MSH5O43196 snoU13.18-201ENST00000459483 104 ntBASIC2.45□□□□□ -2.02
MSH5O43196 MIR200A-201ENST00000384875 90 ntBASIC2.44□□□□□ -2.02
MSH5O43196 RNU6-620P-201ENST00000384017 96 ntBASIC2.43□□□□□ -2.02
MSH5O43196 RNA5SP363-201ENST00000365072 115 ntBASIC2.42□□□□□ -2.02
MSH5O43196 MIR379-201ENST00000362218 67 ntBASIC2.41□□□□□ -2.02
MSH5O43196 MIR19B1-201ENST00000384829 87 ntBASIC2.41□□□□□ -2.02
MSH5O43196 AL356379.1-201ENST00000414105 126 ntBASIC2.41□□□□□ -2.02
MSH5O43196 ACA64.5-201ENST00000516207 127 ntBASIC2.41□□□□□ -2.02
MSH5O43196 MIR6854-201ENST00000614935 69 ntBASIC2.41□□□□□ -2.02
MSH5O43196 PI15-201ENST00000260113 6732 ntAPPRIS P1 TSL 1 (best) BASIC2.41□□□□□ -2.02
MSH5O43196 TEX15-203ENST00000638951 11341 ntAPPRIS P1 TSL 5 BASIC2.4□□□□□ -2.03
MSH5O43196 MIR3122-201ENST00000577243 73 ntBASIC2.39□□□□□ -2.03
Retrieved 100 of 98,524 protein–RNA pairs in 210.9 ms