Protein–RNA interactions for Protein: Q9R1C7

Prpf40a, Pre-mRNA-processing factor 40 homolog A, mousemouse

Known RBP Predictions only

Length 953 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Prpf40aQ9R1C7 Trim7-202ENSMUST00000109213 2356 ntTSL 1 (best) BASIC17.58■□□□□ 0.41
Prpf40aQ9R1C7 Pdk1-201ENSMUST00000006669 5185 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
Prpf40aQ9R1C7 Fam178b-202ENSMUST00000170295 2286 ntAPPRIS ALT2 TSL 5 BASIC17.58■□□□□ 0.4
Prpf40aQ9R1C7 Rps27a-202ENSMUST00000102845 791 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
Prpf40aQ9R1C7 Gm27704-201ENSMUST00000185094 107 ntBASIC17.58■□□□□ 0.4
Prpf40aQ9R1C7 Gm19430-201ENSMUST00000193847 2137 ntBASIC17.58■□□□□ 0.4
Prpf40aQ9R1C7 Insl3-201ENSMUST00000034261 623 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
Prpf40aQ9R1C7 Nthl1-201ENSMUST00000047611 1080 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
Prpf40aQ9R1C7 Tmem128-201ENSMUST00000087511 1291 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
Prpf40aQ9R1C7 Elf2-201ENSMUST00000062009 3353 ntAPPRIS ALT2 TSL 1 (best) BASIC17.58■□□□□ 0.4
Prpf40aQ9R1C7 Fam76a-202ENSMUST00000097856 1863 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
Prpf40aQ9R1C7 Gm45723-201ENSMUST00000212135 1783 ntTSL 5 BASIC17.58■□□□□ 0.4
Prpf40aQ9R1C7 Alox12-202ENSMUST00000108574 2314 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
Prpf40aQ9R1C7 Ptprn-201ENSMUST00000027404 3554 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
Prpf40aQ9R1C7 Rnpep-202ENSMUST00000077340 2288 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
Prpf40aQ9R1C7 Gm6583-201ENSMUST00000051117 2233 ntAPPRIS P1 BASIC17.57■□□□□ 0.4
Prpf40aQ9R1C7 Ube2j2-201ENSMUST00000024056 3483 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
Prpf40aQ9R1C7 Prkar2b-202ENSMUST00000036497 3378 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Prpf40aQ9R1C7 Casc3-201ENSMUST00000017384 3963 ntAPPRIS P1 TSL 2 BASIC17.57■□□□□ 0.4
Prpf40aQ9R1C7 Eml5-210ENSMUST00000223282 7595 ntAPPRIS P1 TSL 5 BASIC17.57■□□□□ 0.4
Prpf40aQ9R1C7 Spg21-201ENSMUST00000034955 2680 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Prpf40aQ9R1C7 4932702P03Rik-201ENSMUST00000138447 1482 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
Prpf40aQ9R1C7 Gm13283-201ENSMUST00000191112 1463 ntAPPRIS P1 BASIC17.57■□□□□ 0.4
Prpf40aQ9R1C7 App-201ENSMUST00000005406 3176 ntAPPRIS P2 TSL 1 (best) BASIC17.57■□□□□ 0.4
Prpf40aQ9R1C7 Slc12a5-201ENSMUST00000099092 6028 ntAPPRIS P2 TSL 1 (best) BASIC17.57■□□□□ 0.4
Prpf40aQ9R1C7 Lpgat1-201ENSMUST00000110855 7233 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Prpf40aQ9R1C7 Nit1-202ENSMUST00000111295 1335 ntAPPRIS P3 TSL 1 (best) BASIC17.57■□□□□ 0.4
Prpf40aQ9R1C7 Smpd5-202ENSMUST00000163991 1823 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Prpf40aQ9R1C7 Prpf40b-212ENSMUST00000145482 3308 ntAPPRIS P2 TSL 1 (best) BASIC17.57■□□□□ 0.4
Prpf40aQ9R1C7 Ndufb11-201ENSMUST00000116621 908 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Prpf40aQ9R1C7 Gm37280-201ENSMUST00000194583 375 ntTSL 3 BASIC17.57■□□□□ 0.4
Prpf40aQ9R1C7 Gm44973-201ENSMUST00000207050 1003 ntAPPRIS P1 TSL 3 BASIC17.57■□□□□ 0.4
Prpf40aQ9R1C7 Ppp1r27-201ENSMUST00000026121 771 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Prpf40aQ9R1C7 Mrps6-201ENSMUST00000047429 846 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Prpf40aQ9R1C7 Rpl36al-201ENSMUST00000054544 526 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Prpf40aQ9R1C7 Hist1h1a-201ENSMUST00000055770 741 ntAPPRIS P1 BASIC17.57■□□□□ 0.4
Prpf40aQ9R1C7 Gfra4-202ENSMUST00000066958 783 ntAPPRIS ALT2 TSL 1 (best) BASIC17.57■□□□□ 0.4
Prpf40aQ9R1C7 E330011M16Rik-201ENSMUST00000193614 1794 ntBASIC17.57■□□□□ 0.4
Prpf40aQ9R1C7 Ripk1-201ENSMUST00000021844 3266 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Prpf40aQ9R1C7 Vmn1r17-204ENSMUST00000228294 2084 ntAPPRIS ALT2 BASIC17.57■□□□□ 0.4
Prpf40aQ9R1C7 Apeh-206ENSMUST00000193254 2518 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Prpf40aQ9R1C7 Rasgef1b-205ENSMUST00000161148 2430 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
Prpf40aQ9R1C7 Bcam-201ENSMUST00000003061 2429 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Prpf40aQ9R1C7 Slc25a32-201ENSMUST00000022908 5905 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Prpf40aQ9R1C7 Tbp-201ENSMUST00000014911 1891 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Prpf40aQ9R1C7 Rnf170-209ENSMUST00000209300 1881 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
Prpf40aQ9R1C7 Fam46b-201ENSMUST00000051676 2287 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Prpf40aQ9R1C7 Gm26821-201ENSMUST00000181954 2652 ntTSL 5 BASIC17.56■□□□□ 0.4
Prpf40aQ9R1C7 Fgfr2-215ENSMUST00000122054 3323 ntAPPRIS P4 TSL 1 (best) BASIC17.56■□□□□ 0.4
Prpf40aQ9R1C7 Hebp2-203ENSMUST00000214548 2083 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
Prpf40aQ9R1C7 Dbx1-201ENSMUST00000032717 2091 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Prpf40aQ9R1C7 Fam208a-201ENSMUST00000022450 7590 ntAPPRIS P1 TSL 5 BASIC17.56■□□□□ 0.4
Prpf40aQ9R1C7 Slc35a1-201ENSMUST00000029970 2039 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Prpf40aQ9R1C7 Lcn12-202ENSMUST00000114245 619 ntAPPRIS ALT2 TSL 1 (best) BASIC17.56■□□□□ 0.4
Prpf40aQ9R1C7 Gm14859-201ENSMUST00000117752 357 ntBASIC17.56■□□□□ 0.4
Prpf40aQ9R1C7 Olfr601-201ENSMUST00000080474 990 ntAPPRIS P1 BASIC17.56■□□□□ 0.4
Prpf40aQ9R1C7 Arntl-201ENSMUST00000047321 2908 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Prpf40aQ9R1C7 Pias4-201ENSMUST00000005064 2571 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Prpf40aQ9R1C7 Naa35-201ENSMUST00000022038 3793 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Prpf40aQ9R1C7 Gm32996-201ENSMUST00000199828 1447 ntBASIC17.55■□□□□ 0.4
Prpf40aQ9R1C7 Jph4-201ENSMUST00000022819 4489 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Prpf40aQ9R1C7 Fgf17-201ENSMUST00000022697 1689 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Prpf40aQ9R1C7 Nepro-201ENSMUST00000048788 2866 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Prpf40aQ9R1C7 Mbd6-201ENSMUST00000026476 4165 ntAPPRIS P3 TSL 5 BASIC17.55■□□□□ 0.4
Prpf40aQ9R1C7 Naa10-204ENSMUST00000114389 1031 ntAPPRIS ALT2 TSL 1 (best) BASIC17.55■□□□□ 0.4
Prpf40aQ9R1C7 Gm27742-201ENSMUST00000184667 60 ntBASIC17.55■□□□□ 0.4
Prpf40aQ9R1C7 Rnf13-209ENSMUST00000199041 1062 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
Prpf40aQ9R1C7 AC154471.1-201ENSMUST00000224418 436 ntBASIC17.55■□□□□ 0.4
Prpf40aQ9R1C7 Casp8-204ENSMUST00000191201 1849 ntAPPRIS ALT2 TSL 5 BASIC17.55■□□□□ 0.4
Prpf40aQ9R1C7 Gm26752-201ENSMUST00000181086 1537 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
Prpf40aQ9R1C7 Lhfpl3-202ENSMUST00000197992 3115 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Prpf40aQ9R1C7 Ddx50-201ENSMUST00000020270 2535 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Prpf40aQ9R1C7 Mapk7-201ENSMUST00000079080 3019 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Prpf40aQ9R1C7 Foxo1-201ENSMUST00000053764 8665 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Prpf40aQ9R1C7 Letm2-208ENSMUST00000210616 2974 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
Prpf40aQ9R1C7 Tox2-201ENSMUST00000099110 2166 ntAPPRIS ALT2 TSL 5 BASIC17.55■□□□□ 0.4
Prpf40aQ9R1C7 Tmem229b-206ENSMUST00000174697 3697 ntAPPRIS P1 TSL 5 BASIC17.54■□□□□ 0.4
Prpf40aQ9R1C7 Tssc4-206ENSMUST00000177841 1364 ntAPPRIS P1 TSL 2 BASIC17.54■□□□□ 0.4
Prpf40aQ9R1C7 Anp32a-201ENSMUST00000085519 2113 ntAPPRIS P2 TSL 1 (best) BASIC17.54■□□□□ 0.4
Prpf40aQ9R1C7 2810468N07Rik-201ENSMUST00000163493 1349 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
Prpf40aQ9R1C7 Gm15794-201ENSMUST00000120182 631 ntBASIC17.54■□□□□ 0.4
Prpf40aQ9R1C7 Gm7284-201ENSMUST00000131667 944 ntBASIC17.54■□□□□ 0.4
Prpf40aQ9R1C7 Gm15890-201ENSMUST00000161024 770 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
Prpf40aQ9R1C7 Npcd-201ENSMUST00000023060 1162 ntAPPRIS ALT2 TSL 1 (best) BASIC17.54■□□□□ 0.4
Prpf40aQ9R1C7 BC024978-204ENSMUST00000179391 1748 ntAPPRIS P3 TSL 5 BASIC17.54■□□□□ 0.4
Prpf40aQ9R1C7 Hsdl2-201ENSMUST00000030078 2611 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Prpf40aQ9R1C7 Lamc1-201ENSMUST00000027752 7622 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Prpf40aQ9R1C7 Pde8b-201ENSMUST00000022192 2517 ntAPPRIS ALT2 TSL 5 BASIC17.54■□□□□ 0.4
Prpf40aQ9R1C7 Noc4l-201ENSMUST00000042147 2075 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Prpf40aQ9R1C7 Gm26889-201ENSMUST00000181523 2252 ntTSL 5 BASIC17.54■□□□□ 0.4
Prpf40aQ9R1C7 Otp-201ENSMUST00000022195 2656 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Prpf40aQ9R1C7 Pex1-202ENSMUST00000121291 4555 ntAPPRIS ALT2 TSL 5 BASIC17.54■□□□□ 0.4
Prpf40aQ9R1C7 Prkag2-203ENSMUST00000114975 2205 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Prpf40aQ9R1C7 Zfp219-212ENSMUST00000228580 2812 ntAPPRIS ALT2 BASIC17.53■□□□□ 0.4
Prpf40aQ9R1C7 Anks1-201ENSMUST00000025058 6844 ntAPPRIS ALT2 TSL 1 (best) BASIC17.53■□□□□ 0.4
Prpf40aQ9R1C7 Ggnbp1-201ENSMUST00000053683 1525 ntAPPRIS P3 TSL 1 (best) BASIC17.53■□□□□ 0.4
Prpf40aQ9R1C7 Cdkn1a-201ENSMUST00000023829 1910 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Prpf40aQ9R1C7 Tmem28-201ENSMUST00000096363 3909 ntAPPRIS P1 TSL 5 BASIC17.53■□□□□ 0.4
Prpf40aQ9R1C7 Sf1-203ENSMUST00000113488 2282 ntTSL 5 BASIC17.53■□□□□ 0.4
Prpf40aQ9R1C7 Vkorc1-203ENSMUST00000206053 606 ntTSL 3 BASIC17.53■□□□□ 0.4
Retrieved 100 of 76,532 protein–RNA pairs in 34.2 ms