Protein–RNA interactions for Protein: Q8R370

Ushbp1, Usher syndrome type-1C protein-binding protein 1, mousemouse

Predictions only

Length 680 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ushbp1Q8R370 Gm26756-201ENSMUST00000181689 1294 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
Ushbp1Q8R370 Gm9991-201ENSMUST00000070048 1207 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
Ushbp1Q8R370 Olfr1272-201ENSMUST00000099750 927 ntAPPRIS P1 BASIC17.88■□□□□ 0.45
Ushbp1Q8R370 Zfp691-204ENSMUST00000179290 1721 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
Ushbp1Q8R370 Sik3-204ENSMUST00000126865 6287 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
Ushbp1Q8R370 4933434E20Rik-209ENSMUST00000162114 1411 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
Ushbp1Q8R370 Grb7-201ENSMUST00000019456 2397 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
Ushbp1Q8R370 Txnrd2-215ENSMUST00000206151 2874 ntAPPRIS P2 TSL 5 BASIC17.88■□□□□ 0.45
Ushbp1Q8R370 Gnb2-203ENSMUST00000111023 1471 ntTSL 5 BASIC17.88■□□□□ 0.45
Ushbp1Q8R370 Ero1lb-203ENSMUST00000221560 1964 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
Ushbp1Q8R370 Rnf26-208ENSMUST00000185479 2964 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
Ushbp1Q8R370 Heyl-201ENSMUST00000040821 4537 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
Ushbp1Q8R370 Rwdd2b-201ENSMUST00000039101 2009 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
Ushbp1Q8R370 Hoxaas2-202ENSMUST00000155922 1567 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
Ushbp1Q8R370 Grk6-202ENSMUST00000099482 2169 ntAPPRIS P3 TSL 1 (best) BASIC17.87■□□□□ 0.45
Ushbp1Q8R370 Men1-204ENSMUST00000113500 2742 ntAPPRIS P2 TSL 5 BASIC17.87■□□□□ 0.45
Ushbp1Q8R370 Ttl-201ENSMUST00000035812 4567 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
Ushbp1Q8R370 Zbtb7c-201ENSMUST00000058997 4569 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
Ushbp1Q8R370 Irak1-201ENSMUST00000033769 2890 ntAPPRIS ALT2 TSL 1 (best) BASIC17.87■□□□□ 0.45
Ushbp1Q8R370 Hps5-202ENSMUST00000107653 4702 ntAPPRIS ALT2 TSL 1 (best) BASIC17.87■□□□□ 0.45
Ushbp1Q8R370 Ccdc174-201ENSMUST00000037783 1752 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
Ushbp1Q8R370 Gmnn-202ENSMUST00000110382 963 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
Ushbp1Q8R370 Lcn12-202ENSMUST00000114245 619 ntAPPRIS ALT2 TSL 1 (best) BASIC17.87■□□□□ 0.45
Ushbp1Q8R370 Tmem255b-201ENSMUST00000167071 1138 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
Ushbp1Q8R370 Prm2-201ENSMUST00000037996 621 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
Ushbp1Q8R370 Tap1-201ENSMUST00000041633 2614 ntAPPRIS ALT2 TSL 1 (best) BASIC17.87■□□□□ 0.45
Ushbp1Q8R370 Pgap2-203ENSMUST00000120119 1979 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
Ushbp1Q8R370 Lrrc25-201ENSMUST00000052437 1313 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
Ushbp1Q8R370 Asap2-201ENSMUST00000050990 3345 ntAPPRIS ALT2 TSL 5 BASIC17.87■□□□□ 0.45
Ushbp1Q8R370 Otp-201ENSMUST00000022195 2656 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
Ushbp1Q8R370 Nploc4-202ENSMUST00000103017 4025 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
Ushbp1Q8R370 Atxn7l3-201ENSMUST00000073234 3688 ntAPPRIS ALT1 TSL 1 (best) BASIC17.87■□□□□ 0.45
Ushbp1Q8R370 Olah-202ENSMUST00000115087 1479 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
Ushbp1Q8R370 Tubb4b-201ENSMUST00000043584 1598 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
Ushbp1Q8R370 Sprn-201ENSMUST00000059241 3374 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
Ushbp1Q8R370 Flvcr1-201ENSMUST00000085635 4040 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
Ushbp1Q8R370 Fam72a-201ENSMUST00000068613 2191 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
Ushbp1Q8R370 Loxl4-205ENSMUST00000171432 2274 ntAPPRIS P3 TSL 1 (best) BASIC17.86■□□□□ 0.45
Ushbp1Q8R370 Agfg1-204ENSMUST00000186302 2352 ntAPPRIS ALT1 TSL 5 BASIC17.86■□□□□ 0.45
Ushbp1Q8R370 Oip5-202ENSMUST00000123818 1082 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
Ushbp1Q8R370 2210408F21Rik-212ENSMUST00000152157 490 ntTSL 2 BASIC17.86■□□□□ 0.45
Ushbp1Q8R370 Zfp747-202ENSMUST00000205832 618 ntTSL 3 BASIC17.86■□□□□ 0.45
Ushbp1Q8R370 AC140264.2-201ENSMUST00000219668 289 ntTSL 2 BASIC17.86■□□□□ 0.45
Ushbp1Q8R370 AC159301.1-201ENSMUST00000225130 1182 ntBASIC17.86■□□□□ 0.45
Ushbp1Q8R370 Olfr571-201ENSMUST00000061738 969 ntAPPRIS P1 BASIC17.86■□□□□ 0.45
Ushbp1Q8R370 Tmem229a-201ENSMUST00000127247 5157 ntAPPRIS P1 BASIC17.86■□□□□ 0.45
Ushbp1Q8R370 Gm29455-202ENSMUST00000186697 1369 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
Ushbp1Q8R370 Inip-202ENSMUST00000107526 1438 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
Ushbp1Q8R370 4933436I20Rik-201ENSMUST00000189405 1434 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
Ushbp1Q8R370 Gm6858-201ENSMUST00000208582 1468 ntBASIC17.86■□□□□ 0.45
Ushbp1Q8R370 Erg-207ENSMUST00000171646 1519 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
Ushbp1Q8R370 Rb1-201ENSMUST00000022701 4656 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
Ushbp1Q8R370 Mamstr-201ENSMUST00000148532 1606 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
Ushbp1Q8R370 Kifc3-203ENSMUST00000169748 3384 ntAPPRIS ALT2 TSL 1 (best) BASIC17.86■□□□□ 0.45
Ushbp1Q8R370 Rgs9-202ENSMUST00000103062 1743 ntTSL 5 BASIC17.86■□□□□ 0.45
Ushbp1Q8R370 Pnpla2-202ENSMUST00000064151 1799 ntAPPRIS P3 TSL 1 (best) BASIC17.86■□□□□ 0.45
Ushbp1Q8R370 Phkg2-202ENSMUST00000121004 1840 ntAPPRIS P1 TSL 5 BASIC17.86■□□□□ 0.45
Ushbp1Q8R370 Gm10532-201ENSMUST00000181913 2301 ntTSL 2 BASIC17.86■□□□□ 0.45
Ushbp1Q8R370 Pou2f2-201ENSMUST00000098679 2340 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
Ushbp1Q8R370 Tsc22d2-203ENSMUST00000199164 4659 ntAPPRIS ALT2 TSL 1 (best) BASIC17.86■□□□□ 0.45
Ushbp1Q8R370 Cap1-203ENSMUST00000106257 2768 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
Ushbp1Q8R370 Agbl5-208ENSMUST00000201168 3199 ntAPPRIS ALT2 TSL 5 BASIC17.85■□□□□ 0.45
Ushbp1Q8R370 Naa10-204ENSMUST00000114389 1031 ntAPPRIS ALT2 TSL 1 (best) BASIC17.85■□□□□ 0.45
Ushbp1Q8R370 Fads3-201ENSMUST00000115995 3269 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
Ushbp1Q8R370 Umad1-202ENSMUST00000159335 2615 ntAPPRIS ALT2 TSL 1 (best) BASIC17.85■□□□□ 0.45
Ushbp1Q8R370 Ssr2-205ENSMUST00000193934 569 ntTSL 3 BASIC17.85■□□□□ 0.45
Ushbp1Q8R370 Hikeshi-207ENSMUST00000207309 835 ntTSL 5 BASIC17.85■□□□□ 0.45
Ushbp1Q8R370 1810010D01Rik-204ENSMUST00000208788 889 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
Ushbp1Q8R370 Ank1-201ENSMUST00000033947 1030 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
Ushbp1Q8R370 Prdx6-201ENSMUST00000051925 959 ntTSL 2 BASIC17.85■□□□□ 0.45
Ushbp1Q8R370 Ifi27l2a-201ENSMUST00000055071 463 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
Ushbp1Q8R370 Srrm2-209ENSMUST00000190686 8864 ntAPPRIS P1 TSL 5 BASIC17.85■□□□□ 0.45
Ushbp1Q8R370 Ptprs-201ENSMUST00000067538 6855 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
Ushbp1Q8R370 Nek2-201ENSMUST00000027931 3227 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
Ushbp1Q8R370 Trim28-201ENSMUST00000005705 3245 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
Ushbp1Q8R370 Myef2-201ENSMUST00000067780 2999 ntAPPRIS ALT2 TSL 5 BASIC17.85■□□□□ 0.45
Ushbp1Q8R370 Acvr2a-201ENSMUST00000063886 5686 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
Ushbp1Q8R370 Mccc1-201ENSMUST00000029259 2455 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
Ushbp1Q8R370 Parg-201ENSMUST00000022470 4413 ntAPPRIS P2 TSL 1 (best) BASIC17.84■□□□□ 0.45
Ushbp1Q8R370 Golt1a-201ENSMUST00000094557 1865 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
Ushbp1Q8R370 Mfsd10-203ENSMUST00000114331 1754 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
Ushbp1Q8R370 Ldha-201ENSMUST00000005051 1766 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
Ushbp1Q8R370 Kcnh2-202ENSMUST00000115098 3193 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
Ushbp1Q8R370 Dag1-203ENSMUST00000171412 4415 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
Ushbp1Q8R370 Npdc1-202ENSMUST00000071442 1485 ntAPPRIS P2 TSL 1 (best) BASIC17.84■□□□□ 0.45
Ushbp1Q8R370 Adgrl1-205ENSMUST00000132500 5719 ntTSL 5 BASIC17.84■□□□□ 0.45
Ushbp1Q8R370 Cd302-202ENSMUST00000074606 1354 ntAPPRIS ALT2 TSL 1 (best) BASIC17.84■□□□□ 0.45
Ushbp1Q8R370 Derl3-202ENSMUST00000217811 1316 ntAPPRIS ALT2 TSL 1 (best) BASIC17.84■□□□□ 0.45
Ushbp1Q8R370 Pax8-201ENSMUST00000028355 2560 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
Ushbp1Q8R370 Oraov1-203ENSMUST00000105895 1016 ntAPPRIS ALT2 TSL 2 BASIC17.84■□□□□ 0.45
Ushbp1Q8R370 1700020A23Rik-202ENSMUST00000110281 521 ntAPPRIS P1 TSL 3 BASIC17.84■□□□□ 0.45
Ushbp1Q8R370 Bhlhe41-202ENSMUST00000111703 744 ntTSL 3 BASIC17.84■□□□□ 0.45
Ushbp1Q8R370 Upp1-205ENSMUST00000164791 1252 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
Ushbp1Q8R370 H2-T-ps-201ENSMUST00000172538 1067 ntBASIC17.84■□□□□ 0.45
Ushbp1Q8R370 Tecr-201ENSMUST00000019382 1158 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
Ushbp1Q8R370 Gm18195-201ENSMUST00000207604 706 ntBASIC17.84■□□□□ 0.45
Ushbp1Q8R370 Tesc-201ENSMUST00000031304 1031 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
Ushbp1Q8R370 Dpm1-209ENSMUST00000154111 2293 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
Ushbp1Q8R370 Kat5-201ENSMUST00000113641 2008 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
Ushbp1Q8R370 Letm2-208ENSMUST00000210616 2974 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
Retrieved 100 of 76,532 protein–RNA pairs in 25 ms