Protein–RNA interactions for Protein: Q8C0E3

Trim47, Tripartite motif-containing protein 47, mousemouse

Predictions only

Length 641 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim47Q8C0E3 Tbc1d12-201ENSMUST00000037302 4209 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Trim47Q8C0E3 Fam155a-206ENSMUST00000208933 1569 ntAPPRIS ALT2 TSL 1 (best) BASIC17.67■□□□□ 0.42
Trim47Q8C0E3 Col11a2-203ENSMUST00000114255 5722 ntAPPRIS ALT2 TSL 5 BASIC17.67■□□□□ 0.42
Trim47Q8C0E3 Dctd-201ENSMUST00000033966 2072 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Trim47Q8C0E3 Pde8b-202ENSMUST00000067082 2598 ntAPPRIS ALT2 TSL 5 BASIC17.67■□□□□ 0.42
Trim47Q8C0E3 March2-201ENSMUST00000066121 3400 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
Trim47Q8C0E3 Rmnd5b-201ENSMUST00000001081 1946 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Trim47Q8C0E3 Cpq-201ENSMUST00000042167 1923 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Trim47Q8C0E3 Nup98-205ENSMUST00000211022 3132 ntTSL 2 BASIC17.67■□□□□ 0.42
Trim47Q8C0E3 Arl4c-202ENSMUST00000159814 3997 ntAPPRIS P1 BASIC17.67■□□□□ 0.42
Trim47Q8C0E3 Gm4609-201ENSMUST00000106443 1002 ntBASIC17.67■□□□□ 0.42
Trim47Q8C0E3 Gm5138-201ENSMUST00000113842 1002 ntBASIC17.67■□□□□ 0.42
Trim47Q8C0E3 Gm8097-201ENSMUST00000117903 829 ntBASIC17.67■□□□□ 0.42
Trim47Q8C0E3 Gm15191-201ENSMUST00000117933 1000 ntBASIC17.67■□□□□ 0.42
Trim47Q8C0E3 Gm12182-201ENSMUST00000118655 1008 ntBASIC17.67■□□□□ 0.42
Trim47Q8C0E3 Gm13882-201ENSMUST00000120886 1002 ntBASIC17.67■□□□□ 0.42
Trim47Q8C0E3 Psmc4-206ENSMUST00000140053 1244 ntTSL 5 BASIC17.67■□□□□ 0.42
Trim47Q8C0E3 Gm10284-201ENSMUST00000145057 1005 ntBASIC17.67■□□□□ 0.42
Trim47Q8C0E3 Smarca5-ps-202ENSMUST00000171805 1284 ntBASIC17.67■□□□□ 0.42
Trim47Q8C0E3 Gm10481-201ENSMUST00000179228 1002 ntBASIC17.67■□□□□ 0.42
Trim47Q8C0E3 Gapdh-ps15-201ENSMUST00000180966 1002 ntBASIC17.67■□□□□ 0.42
Trim47Q8C0E3 Gm2574-201ENSMUST00000181051 1002 ntBASIC17.67■□□□□ 0.42
Trim47Q8C0E3 Gm3200-201ENSMUST00000181493 1002 ntBASIC17.67■□□□□ 0.42
Trim47Q8C0E3 Gm8825-201ENSMUST00000182565 998 ntBASIC17.67■□□□□ 0.42
Trim47Q8C0E3 Gm4518-201ENSMUST00000182638 718 ntBASIC17.67■□□□□ 0.42
Trim47Q8C0E3 Gm8330-201ENSMUST00000182754 1008 ntBASIC17.67■□□□□ 0.42
Trim47Q8C0E3 Gm4575-201ENSMUST00000182991 1002 ntBASIC17.67■□□□□ 0.42
Trim47Q8C0E3 Gm8709-201ENSMUST00000183230 1012 ntBASIC17.67■□□□□ 0.42
Trim47Q8C0E3 Gm37584-201ENSMUST00000193595 1290 ntBASIC17.67■□□□□ 0.42
Trim47Q8C0E3 Krtcap3-208ENSMUST00000201937 889 ntAPPRIS P1 TSL 5 BASIC17.67■□□□□ 0.42
Trim47Q8C0E3 Gm26646-202ENSMUST00000205705 439 ntTSL 5 BASIC17.67■□□□□ 0.42
Trim47Q8C0E3 AL669916.2-201ENSMUST00000213219 358 ntTSL 2 BASIC17.67■□□□□ 0.42
Trim47Q8C0E3 Fars2-201ENSMUST00000021857 2125 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Trim47Q8C0E3 Gm10293-201ENSMUST00000076317 1002 ntBASIC17.67■□□□□ 0.42
Trim47Q8C0E3 Gm6316-201ENSMUST00000082064 1020 ntBASIC17.67■□□□□ 0.42
Trim47Q8C0E3 Cnih3-201ENSMUST00000027795 2668 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Trim47Q8C0E3 Leprotl1-201ENSMUST00000033910 2879 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Trim47Q8C0E3 Ptges2-201ENSMUST00000028162 4978 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Trim47Q8C0E3 Mid2-202ENSMUST00000112990 6271 ntAPPRIS P1 TSL 5 BASIC17.67■□□□□ 0.42
Trim47Q8C0E3 Gm45844-204ENSMUST00000209833 1524 ntAPPRIS ALT2 TSL 5 BASIC17.67■□□□□ 0.42
Trim47Q8C0E3 Sox14-201ENSMUST00000054819 2065 ntAPPRIS P1 BASIC17.67■□□□□ 0.42
Trim47Q8C0E3 Gm18856-201ENSMUST00000178096 1374 ntBASIC17.66■□□□□ 0.42
Trim47Q8C0E3 Prex1-201ENSMUST00000036719 6533 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Trim47Q8C0E3 Rgs7-203ENSMUST00000192227 2113 ntAPPRIS P3 TSL 1 (best) BASIC17.66■□□□□ 0.42
Trim47Q8C0E3 Krt23-201ENSMUST00000006969 1565 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Trim47Q8C0E3 Ncoa1-201ENSMUST00000085814 7329 ntAPPRIS P2 TSL 1 (best) BASIC17.66■□□□□ 0.42
Trim47Q8C0E3 Ttl-201ENSMUST00000035812 4567 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Trim47Q8C0E3 Xrcc1-205ENSMUST00000205573 2528 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Trim47Q8C0E3 Gpc5-202ENSMUST00000175665 2187 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
Trim47Q8C0E3 Rbfox2-206ENSMUST00000227314 1810 ntBASIC17.66■□□□□ 0.42
Trim47Q8C0E3 Tcp1-209ENSMUST00000151287 2446 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Trim47Q8C0E3 Ttc6-203ENSMUST00000172939 5782 ntAPPRIS P1 TSL 5 BASIC17.66■□□□□ 0.42
Trim47Q8C0E3 Gm13418-201ENSMUST00000119097 944 ntBASIC17.66■□□□□ 0.42
Trim47Q8C0E3 Tnnt2-205ENSMUST00000178204 1172 ntAPPRIS ALT2 TSL 5 BASIC17.66■□□□□ 0.42
Trim47Q8C0E3 Tnnt2-207ENSMUST00000179863 1097 ntAPPRIS P4 TSL 5 BASIC17.66■□□□□ 0.42
Trim47Q8C0E3 Tnnt2-209ENSMUST00000188028 1200 ntAPPRIS P4 TSL 5 BASIC17.66■□□□□ 0.42
Trim47Q8C0E3 Hist1h3g-201ENSMUST00000080859 530 ntAPPRIS P1 BASIC17.66■□□□□ 0.42
Trim47Q8C0E3 Pak4-202ENSMUST00000108283 2899 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Trim47Q8C0E3 Gm28265-201ENSMUST00000188201 2319 ntBASIC17.66■□□□□ 0.42
Trim47Q8C0E3 Bpifb3-202ENSMUST00000109760 1741 ntAPPRIS P1 TSL 5 BASIC17.66■□□□□ 0.42
Trim47Q8C0E3 Zc3h14-204ENSMUST00000110105 3514 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Trim47Q8C0E3 Gm13327-201ENSMUST00000133391 2741 ntTSL 5 BASIC17.65■□□□□ 0.42
Trim47Q8C0E3 Col17a1-201ENSMUST00000026045 5588 ntAPPRIS ALT2 TSL 1 (best) BASIC17.65■□□□□ 0.42
Trim47Q8C0E3 Fgfr1-214ENSMUST00000178276 4741 ntTSL 5 BASIC17.65■□□□□ 0.42
Trim47Q8C0E3 Hnrnpl-202ENSMUST00000172529 1898 ntTSL 5 BASIC17.65■□□□□ 0.42
Trim47Q8C0E3 Rab6b-201ENSMUST00000035155 5007 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Trim47Q8C0E3 Pdk3-201ENSMUST00000045748 2115 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Trim47Q8C0E3 Cdh24-201ENSMUST00000067784 3489 ntAPPRIS P1 TSL 5 BASIC17.65■□□□□ 0.42
Trim47Q8C0E3 Gm16194-203ENSMUST00000141239 362 ntTSL 3 BASIC17.65■□□□□ 0.42
Trim47Q8C0E3 Myo5a-214ENSMUST00000155282 6372 ntAPPRIS P5 TSL 5 BASIC17.65■□□□□ 0.42
Trim47Q8C0E3 AC161829.1-201ENSMUST00000220298 281 ntBASIC17.65■□□□□ 0.42
Trim47Q8C0E3 Aurkaip1-201ENSMUST00000084097 1159 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Trim47Q8C0E3 Gm36447-201ENSMUST00000201101 1978 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
Trim47Q8C0E3 Zyx-205ENSMUST00000203401 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC17.65■□□□□ 0.42
Trim47Q8C0E3 Nectin3-202ENSMUST00000023335 9116 ntAPPRIS ALT2 TSL 1 (best) BASIC17.65■□□□□ 0.42
Trim47Q8C0E3 Cadm3-201ENSMUST00000005470 2518 ntTSL 5 BASIC17.65■□□□□ 0.42
Trim47Q8C0E3 Nat8f3-202ENSMUST00000168531 1347 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Trim47Q8C0E3 Plppr4-201ENSMUST00000061071 5696 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Trim47Q8C0E3 Hnrnpll-205ENSMUST00000184635 3009 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Trim47Q8C0E3 A830018L16Rik-208ENSMUST00000171690 6158 ntAPPRIS ALT2 TSL 5 BASIC17.65■□□□□ 0.42
Trim47Q8C0E3 Pnkp-202ENSMUST00000098478 1550 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
Trim47Q8C0E3 Gm6277-201ENSMUST00000180860 1839 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
Trim47Q8C0E3 Rccd1-202ENSMUST00000121882 2324 ntAPPRIS P1 TSL 5 BASIC17.65■□□□□ 0.42
Trim47Q8C0E3 Rab27b-202ENSMUST00000117692 2842 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Trim47Q8C0E3 Ak3-201ENSMUST00000025696 2809 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Trim47Q8C0E3 Tmem131l-201ENSMUST00000052342 4815 ntAPPRIS ALT2 TSL 5 BASIC17.65■□□□□ 0.42
Trim47Q8C0E3 Ccdc24-201ENSMUST00000106422 1365 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
Trim47Q8C0E3 Txnrd2-215ENSMUST00000206151 2874 ntAPPRIS P2 TSL 5 BASIC17.65■□□□□ 0.42
Trim47Q8C0E3 Hipk2-206ENSMUST00000161779 7684 ntAPPRIS P3 TSL 1 (best) BASIC17.65■□□□□ 0.42
Trim47Q8C0E3 Fbxo9-202ENSMUST00000085311 2155 ntAPPRIS ALT1 TSL 1 (best) BASIC17.64■□□□□ 0.42
Trim47Q8C0E3 Gm37166-201ENSMUST00000195473 2474 ntBASIC17.64■□□□□ 0.42
Trim47Q8C0E3 Tcp11-202ENSMUST00000043925 1746 ntAPPRIS ALT2 TSL 5 BASIC17.64■□□□□ 0.41
Trim47Q8C0E3 Cd5-201ENSMUST00000025571 2069 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Trim47Q8C0E3 Ndufb6-202ENSMUST00000108108 480 ntTSL 3 BASIC17.64■□□□□ 0.41
Trim47Q8C0E3 Gm11780-201ENSMUST00000136880 516 ntBASIC17.64■□□□□ 0.41
Trim47Q8C0E3 Gm15246-201ENSMUST00000149873 540 ntTSL 3 BASIC17.64■□□□□ 0.41
Trim47Q8C0E3 Gm4535-201ENSMUST00000182274 558 ntBASIC17.64■□□□□ 0.41
Trim47Q8C0E3 Timm10b-211ENSMUST00000210350 529 ntAPPRIS ALT2 TSL 2 BASIC17.64■□□□□ 0.41
Trim47Q8C0E3 Rangrf-201ENSMUST00000038644 820 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Trim47Q8C0E3 Bex3-201ENSMUST00000053540 930 ntAPPRIS P3 TSL 1 (best) BASIC17.64■□□□□ 0.41
Retrieved 100 of 76,532 protein–RNA pairs in 26.1 ms