Protein–RNA interactions for Protein: Q8BX13

Ube3d, E3 ubiquitin-protein ligase E3D, mousemouse

Predictions only

Length 368 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ube3dQ8BX13 Bnipl-201ENSMUST00000098871 1414 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
Ube3dQ8BX13 Tmx4-203ENSMUST00000110120 2602 ntAPPRIS ALT2 TSL 1 (best) BASIC14.21□□□□□ -0.14
Ube3dQ8BX13 Pcdh1-203ENSMUST00000160721 5416 ntTSL 5 BASIC14.21□□□□□ -0.14
Ube3dQ8BX13 Zkscan6-202ENSMUST00000071465 2270 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.14
Ube3dQ8BX13 Slmap-212ENSMUST00000139075 4508 ntAPPRIS ALT2 TSL 1 (best) BASIC14.21□□□□□ -0.14
Ube3dQ8BX13 Taf15-201ENSMUST00000021018 2068 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.14
Ube3dQ8BX13 Ap1m1-201ENSMUST00000003117 2084 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.14
Ube3dQ8BX13 Ager-201ENSMUST00000015596 1370 ntAPPRIS P3 TSL 1 (best) BASIC14.21□□□□□ -0.14
Ube3dQ8BX13 Ptbp2-213ENSMUST00000200097 3777 ntAPPRIS ALT1 TSL 1 (best) BASIC14.21□□□□□ -0.14
Ube3dQ8BX13 Rnf170-209ENSMUST00000209300 1881 ntTSL 1 (best) BASIC14.21□□□□□ -0.14
Ube3dQ8BX13 Dlgap1-201ENSMUST00000060072 5420 ntAPPRIS ALT2 TSL 1 (best) BASIC14.2□□□□□ -0.14
Ube3dQ8BX13 Sptbn4-203ENSMUST00000108363 4724 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
Ube3dQ8BX13 Sptbn4-204ENSMUST00000108364 4740 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
Ube3dQ8BX13 Emilin3-202ENSMUST00000109454 3396 ntAPPRIS ALT2 TSL 5 BASIC14.2□□□□□ -0.14
Ube3dQ8BX13 Golga5-201ENSMUST00000021609 3390 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Ube3dQ8BX13 Tex19.2-201ENSMUST00000039146 2046 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Ube3dQ8BX13 Fam83f-201ENSMUST00000023044 2988 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Ube3dQ8BX13 Ube2d3-208ENSMUST00000197134 2493 ntAPPRIS ALT1 TSL 5 BASIC14.2□□□□□ -0.14
Ube3dQ8BX13 Gm13285-201ENSMUST00000179725 1462 ntAPPRIS P1 BASIC14.2□□□□□ -0.14
Ube3dQ8BX13 Prss53-201ENSMUST00000121394 2134 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Ube3dQ8BX13 Rgl1-201ENSMUST00000027760 4572 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
Ube3dQ8BX13 Tcf25-205ENSMUST00000212470 2572 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
Ube3dQ8BX13 Snx1-201ENSMUST00000034946 2073 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Ube3dQ8BX13 Gm13524-201ENSMUST00000125869 662 ntTSL 3 BASIC14.2□□□□□ -0.14
Ube3dQ8BX13 Znhit2-201ENSMUST00000162726 1281 ntAPPRIS P1 BASIC14.2□□□□□ -0.14
Ube3dQ8BX13 Gm27357-201ENSMUST00000183754 135 ntBASIC14.2□□□□□ -0.14
Ube3dQ8BX13 Rad51d-203ENSMUST00000092844 1228 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
Ube3dQ8BX13 Mindy4-203ENSMUST00000204842 2211 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
Ube3dQ8BX13 Fam181a-203ENSMUST00000191218 1419 ntAPPRIS P1 TSL 5 BASIC14.2□□□□□ -0.14
Ube3dQ8BX13 Sctr-201ENSMUST00000072886 2012 ntAPPRIS P3 TSL 2 BASIC14.2□□□□□ -0.14
Ube3dQ8BX13 Hspb6-201ENSMUST00000044048 1363 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Ube3dQ8BX13 Gm45203-201ENSMUST00000206384 1831 ntBASIC14.2□□□□□ -0.14
Ube3dQ8BX13 Psip1-201ENSMUST00000030207 3251 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Ube3dQ8BX13 Fbxl18-201ENSMUST00000035985 2831 ntAPPRIS P2 TSL 1 (best) BASIC14.19□□□□□ -0.14
Ube3dQ8BX13 Olfr533-202ENSMUST00000211093 2397 ntAPPRIS P1 TSL 3 BASIC14.19□□□□□ -0.14
Ube3dQ8BX13 Slc23a3-201ENSMUST00000027405 2059 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Ube3dQ8BX13 Mesp2-201ENSMUST00000107394 1944 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Ube3dQ8BX13 Wdr55-201ENSMUST00000049323 1498 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Ube3dQ8BX13 Rflnb-201ENSMUST00000021207 3512 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Ube3dQ8BX13 Sppl3-201ENSMUST00000031530 3204 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Ube3dQ8BX13 Sntb2-201ENSMUST00000047425 3225 ntAPPRIS ALT2 TSL 1 (best) BASIC14.19□□□□□ -0.14
Ube3dQ8BX13 Flt1-203ENSMUST00000110529 6292 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
Ube3dQ8BX13 Bcor-204ENSMUST00000115513 6941 ntAPPRIS ALT2 TSL 1 (best) BASIC14.19□□□□□ -0.14
Ube3dQ8BX13 Ubp1-202ENSMUST00000084885 3850 ntAPPRIS P4 TSL 5 BASIC14.19□□□□□ -0.14
Ube3dQ8BX13 Tmem241-205ENSMUST00000209859 1426 ntAPPRIS P4 TSL 1 (best) BASIC14.19□□□□□ -0.14
Ube3dQ8BX13 Safb-207ENSMUST00000182533 3122 ntAPPRIS ALT2 TSL 5 BASIC14.19□□□□□ -0.14
Ube3dQ8BX13 Zkscan8-202ENSMUST00000110481 728 ntTSL 2 BASIC14.19□□□□□ -0.14
Ube3dQ8BX13 Pgam1-ps2-201ENSMUST00000117129 765 ntBASIC14.19□□□□□ -0.14
Ube3dQ8BX13 Gm12359-202ENSMUST00000141696 713 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
Ube3dQ8BX13 1500009L16Rik-201ENSMUST00000150459 1194 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Ube3dQ8BX13 Gm12359-203ENSMUST00000153181 680 ntTSL 3 BASIC14.19□□□□□ -0.14
Ube3dQ8BX13 Gm28402-201ENSMUST00000188574 373 ntTSL 3 BASIC14.19□□□□□ -0.14
Ube3dQ8BX13 Gm17971-201ENSMUST00000190239 806 ntBASIC14.19□□□□□ -0.14
Ube3dQ8BX13 Arl5b-206ENSMUST00000193836 481 ntTSL 2 BASIC14.19□□□□□ -0.14
Ube3dQ8BX13 Jagn1-202ENSMUST00000204254 1147 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
Ube3dQ8BX13 Gm38973-201ENSMUST00000206810 878 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
Ube3dQ8BX13 Spem1-201ENSMUST00000045771 1041 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Ube3dQ8BX13 Chst8-204ENSMUST00000205259 1980 ntAPPRIS P1 TSL 5 BASIC14.19□□□□□ -0.14
Ube3dQ8BX13 Casp2-201ENSMUST00000031895 3529 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Ube3dQ8BX13 Dtx2-202ENSMUST00000111142 2650 ntAPPRIS ALT2 TSL 1 (best) BASIC14.19□□□□□ -0.14
Ube3dQ8BX13 Cadps2-202ENSMUST00000069074 3935 ntTSL 5 BASIC14.19□□□□□ -0.14
Ube3dQ8BX13 Krt6b-201ENSMUST00000023786 2226 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Ube3dQ8BX13 Exoc8-201ENSMUST00000098312 4598 ntAPPRIS P1 BASIC14.19□□□□□ -0.14
Ube3dQ8BX13 Sox1ot-201ENSMUST00000080795 5064 ntTSL 5 BASIC14.19□□□□□ -0.14
Ube3dQ8BX13 Cops6-201ENSMUST00000019638 1787 ntAPPRIS P2 TSL 1 (best) BASIC14.19□□□□□ -0.14
Ube3dQ8BX13 Zfp655-206ENSMUST00000200039 1765 ntAPPRIS ALT1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Ube3dQ8BX13 Gm13074-201ENSMUST00000124848 2735 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
Ube3dQ8BX13 Rptor-201ENSMUST00000026671 6594 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Ube3dQ8BX13 Tmem87b-201ENSMUST00000110325 4807 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Ube3dQ8BX13 Rint1-205ENSMUST00000120869 1886 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
Ube3dQ8BX13 Prkcg-202ENSMUST00000172109 2119 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
Ube3dQ8BX13 4930455H04Rik-201ENSMUST00000117592 1341 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Ube3dQ8BX13 Fhl1-201ENSMUST00000023854 2356 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
Ube3dQ8BX13 Wnt8b-201ENSMUST00000041163 3376 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Ube3dQ8BX13 Cdc23-201ENSMUST00000025228 2084 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
Ube3dQ8BX13 Bnip2-202ENSMUST00000085393 2328 ntAPPRIS ALT2 TSL 1 (best) BASIC14.18□□□□□ -0.14
Ube3dQ8BX13 Cep44-201ENSMUST00000040330 1690 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Ube3dQ8BX13 Kif21a-204ENSMUST00000109287 6124 ntAPPRIS ALT2 TSL 1 (best) BASIC14.18□□□□□ -0.14
Ube3dQ8BX13 Kif21a-205ENSMUST00000109288 6142 ntAPPRIS P3 TSL 1 (best) BASIC14.18□□□□□ -0.14
Ube3dQ8BX13 Gm16181-201ENSMUST00000118793 567 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Ube3dQ8BX13 Olfr129-201ENSMUST00000122318 993 ntBASIC14.18□□□□□ -0.14
Ube3dQ8BX13 Lce1k-201ENSMUST00000179917 663 ntAPPRIS P1 TSL 2 BASIC14.18□□□□□ -0.14
Ube3dQ8BX13 Celrr-203ENSMUST00000185678 937 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
Ube3dQ8BX13 Gm44450-201ENSMUST00000199528 114 ntBASIC14.18□□□□□ -0.14
Ube3dQ8BX13 Pdcd2l-201ENSMUST00000002710 1295 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Ube3dQ8BX13 Rcn2-201ENSMUST00000114276 2024 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Ube3dQ8BX13 Nrip1-201ENSMUST00000054178 4529 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Ube3dQ8BX13 Nrxn1-216ENSMUST00000174331 6282 ntAPPRIS ALT1 TSL 5 BASIC14.18□□□□□ -0.14
Ube3dQ8BX13 Dusp14-205ENSMUST00000164891 1454 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Ube3dQ8BX13 Gnal-201ENSMUST00000025402 5616 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
Ube3dQ8BX13 P2ry2-206ENSMUST00000208340 2693 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Ube3dQ8BX13 Insig1-201ENSMUST00000059155 2697 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Ube3dQ8BX13 Cdk9-202ENSMUST00000120105 1565 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
Ube3dQ8BX13 Sh2b1-201ENSMUST00000032978 3393 ntAPPRIS P3 TSL 1 (best) BASIC14.17□□□□□ -0.14
Ube3dQ8BX13 Agk-201ENSMUST00000031977 2531 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Ube3dQ8BX13 Ltbp1-201ENSMUST00000001927 6671 ntTSL 5 BASIC14.17□□□□□ -0.14
Ube3dQ8BX13 Madcam1-201ENSMUST00000020554 1436 ntAPPRIS P2 TSL 1 (best) BASIC14.17□□□□□ -0.14
Ube3dQ8BX13 Clvs2-201ENSMUST00000019920 2717 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Ube3dQ8BX13 Gm43598-201ENSMUST00000202482 2479 ntBASIC14.17□□□□□ -0.14
Ube3dQ8BX13 Snrk-201ENSMUST00000118886 4811 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Retrieved 100 of 76,532 protein–RNA pairs in 25 ms