Protein–RNA interactions for Protein: Q69ZI1

Sh3rf1, E3 ubiquitin-protein ligase SH3RF1, mousemouse

Predictions only

Length 892 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sh3rf1Q69ZI1 D930048G16Rik-201ENSMUST00000180975 2266 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
Sh3rf1Q69ZI1 Nrip1-201ENSMUST00000054178 4529 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
Sh3rf1Q69ZI1 Rmdn1-201ENSMUST00000029888 1734 ntAPPRIS P2 TSL 1 (best) BASIC16.22■□□□□ 0.19
Sh3rf1Q69ZI1 Cldn7-201ENSMUST00000018713 1335 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
Sh3rf1Q69ZI1 Ero1lb-203ENSMUST00000221560 1964 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
Sh3rf1Q69ZI1 Des-201ENSMUST00000027409 3028 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
Sh3rf1Q69ZI1 Rnf207-201ENSMUST00000076183 2466 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
Sh3rf1Q69ZI1 St6galnac2-201ENSMUST00000079545 3643 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
Sh3rf1Q69ZI1 Sgpp1-202ENSMUST00000220285 3200 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
Sh3rf1Q69ZI1 Knl1-201ENSMUST00000028799 5527 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
Sh3rf1Q69ZI1 Yif1b-203ENSMUST00000108238 1126 ntAPPRIS ALT2 TSL 1 (best) BASIC16.22■□□□□ 0.19
Sh3rf1Q69ZI1 Mras-203ENSMUST00000122384 1122 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
Sh3rf1Q69ZI1 AC130713.1-201ENSMUST00000228853 1096 ntBASIC16.22■□□□□ 0.19
Sh3rf1Q69ZI1 Mrpl14-201ENSMUST00000024734 645 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
Sh3rf1Q69ZI1 Ndufb8-201ENSMUST00000026222 680 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
Sh3rf1Q69ZI1 C530025M09Rik-201ENSMUST00000099264 690 ntAPPRIS P1 BASIC16.22■□□□□ 0.19
Sh3rf1Q69ZI1 Slc25a20-201ENSMUST00000035222 1783 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
Sh3rf1Q69ZI1 A130010J15Rik-201ENSMUST00000110831 2257 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
Sh3rf1Q69ZI1 Espnl-202ENSMUST00000176156 2886 ntTSL 5 BASIC16.22■□□□□ 0.19
Sh3rf1Q69ZI1 Zfp109-203ENSMUST00000206960 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC16.22■□□□□ 0.19
Sh3rf1Q69ZI1 Tmem184b-201ENSMUST00000074991 3361 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
Sh3rf1Q69ZI1 Rilpl1-201ENSMUST00000062153 2249 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
Sh3rf1Q69ZI1 Fam78b-206ENSMUST00000190081 4666 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
Sh3rf1Q69ZI1 Golph3-201ENSMUST00000059680 2652 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
Sh3rf1Q69ZI1 Pdzd4-202ENSMUST00000114438 3625 ntAPPRIS ALT2 TSL 1 (best) BASIC16.21■□□□□ 0.19
Sh3rf1Q69ZI1 Ccdc158-204ENSMUST00000151180 3352 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
Sh3rf1Q69ZI1 Ttll3-202ENSMUST00000038889 3114 ntAPPRIS ALT2 TSL 5 BASIC16.21■□□□□ 0.19
Sh3rf1Q69ZI1 Ptgs1-201ENSMUST00000062069 2867 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
Sh3rf1Q69ZI1 Rpl5-201ENSMUST00000082223 2045 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
Sh3rf1Q69ZI1 Wt1-201ENSMUST00000111098 2395 ntTSL 5 BASIC16.21■□□□□ 0.19
Sh3rf1Q69ZI1 Nagpa-201ENSMUST00000023911 2143 ntAPPRIS P2 TSL 1 (best) BASIC16.21■□□□□ 0.19
Sh3rf1Q69ZI1 Rsu1-201ENSMUST00000028059 1546 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
Sh3rf1Q69ZI1 Utp23-204ENSMUST00000161651 582 ntTSL 5 BASIC16.21■□□□□ 0.19
Sh3rf1Q69ZI1 Gm17092-201ENSMUST00000166606 698 ntTSL 2 BASIC16.21■□□□□ 0.19
Sh3rf1Q69ZI1 Gm18958-201ENSMUST00000174258 762 ntBASIC16.21■□□□□ 0.19
Sh3rf1Q69ZI1 Pdrg1-201ENSMUST00000028972 1273 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
Sh3rf1Q69ZI1 Sox6os-201ENSMUST00000032900 420 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
Sh3rf1Q69ZI1 Gm20460-201ENSMUST00000168709 1572 ntTSL 5 BASIC16.21■□□□□ 0.18
Sh3rf1Q69ZI1 Slc5a5-201ENSMUST00000000809 2928 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.18
Sh3rf1Q69ZI1 Fam174b-201ENSMUST00000107456 2683 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.18
Sh3rf1Q69ZI1 Ano8-201ENSMUST00000093450 3653 ntAPPRIS P2 TSL 1 (best) BASIC16.21■□□□□ 0.18
Sh3rf1Q69ZI1 Cdyl2-201ENSMUST00000109102 2411 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Sh3rf1Q69ZI1 9630013D21Rik-204ENSMUST00000156790 3096 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
Sh3rf1Q69ZI1 Pitpna-206ENSMUST00000179521 3727 ntAPPRIS ALT1 TSL 5 BASIC16.2■□□□□ 0.18
Sh3rf1Q69ZI1 Tox2-202ENSMUST00000109428 2947 ntAPPRIS ALT2 TSL 5 BASIC16.2■□□□□ 0.18
Sh3rf1Q69ZI1 Tcf25-205ENSMUST00000212470 2572 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
Sh3rf1Q69ZI1 Gusb-203ENSMUST00000111308 2038 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
Sh3rf1Q69ZI1 Agbl3-204ENSMUST00000115016 3734 ntAPPRIS ALT2 TSL 1 (best) BASIC16.2■□□□□ 0.18
Sh3rf1Q69ZI1 Surf1-201ENSMUST00000015934 1173 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Sh3rf1Q69ZI1 Gm8797-201ENSMUST00000192045 490 ntAPPRIS P1 BASIC16.2■□□□□ 0.18
Sh3rf1Q69ZI1 Atxn7-202ENSMUST00000223714 2954 ntAPPRIS ALT2 BASIC16.2■□□□□ 0.18
Sh3rf1Q69ZI1 Iscu-201ENSMUST00000026937 957 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Sh3rf1Q69ZI1 Akirin1-201ENSMUST00000102636 3052 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Sh3rf1Q69ZI1 Gm12359-201ENSMUST00000139017 1399 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
Sh3rf1Q69ZI1 Dcdc2a-201ENSMUST00000036932 2345 ntAPPRIS ALT2 TSL 1 (best) BASIC16.2■□□□□ 0.18
Sh3rf1Q69ZI1 Galnt18-202ENSMUST00000106663 2530 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Sh3rf1Q69ZI1 Lbp-201ENSMUST00000016168 2525 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Sh3rf1Q69ZI1 Cep57-201ENSMUST00000034398 2523 ntAPPRIS P3 TSL 1 (best) BASIC16.2■□□□□ 0.18
Sh3rf1Q69ZI1 Cstf2-203ENSMUST00000113287 3661 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
Sh3rf1Q69ZI1 Zkscan17-202ENSMUST00000101150 3771 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
Sh3rf1Q69ZI1 Mrs2-201ENSMUST00000021772 7035 ntAPPRIS P1 TSL 5 BASIC16.2■□□□□ 0.18
Sh3rf1Q69ZI1 Trim41-201ENSMUST00000047145 3432 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Sh3rf1Q69ZI1 Snx1-201ENSMUST00000034946 2073 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Sh3rf1Q69ZI1 Phf21b-203ENSMUST00000159939 3639 ntAPPRIS P2 TSL 1 (best) BASIC16.2■□□□□ 0.18
Sh3rf1Q69ZI1 4930524O07Rik-203ENSMUST00000193135 2289 ntBASIC16.2■□□□□ 0.18
Sh3rf1Q69ZI1 Axin1-201ENSMUST00000074370 3777 ntAPPRIS P3 TSL 1 (best) BASIC16.2■□□□□ 0.18
Sh3rf1Q69ZI1 Hmg20b-213ENSMUST00000167481 1321 ntAPPRIS P1 TSL 5 BASIC16.19■□□□□ 0.18
Sh3rf1Q69ZI1 Fam181a-203ENSMUST00000191218 1419 ntAPPRIS P1 TSL 5 BASIC16.19■□□□□ 0.18
Sh3rf1Q69ZI1 Inhba-202ENSMUST00000164993 1529 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Sh3rf1Q69ZI1 Zbtb7c-201ENSMUST00000058997 4569 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Sh3rf1Q69ZI1 Evc-202ENSMUST00000114148 2119 ntAPPRIS ALT2 TSL 1 (best) BASIC16.19■□□□□ 0.18
Sh3rf1Q69ZI1 Dnajb12-201ENSMUST00000020309 2238 ntAPPRIS P2 TSL 1 (best) BASIC16.19■□□□□ 0.18
Sh3rf1Q69ZI1 Shank3-203ENSMUST00000109309 7365 ntAPPRIS ALT2 TSL 1 (best) BASIC16.19■□□□□ 0.18
Sh3rf1Q69ZI1 Tcf3-201ENSMUST00000020377 2842 ntAPPRIS ALT2 TSL 5 BASIC16.19■□□□□ 0.18
Sh3rf1Q69ZI1 Adipor1-201ENSMUST00000027727 3123 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Sh3rf1Q69ZI1 Cdk12-203ENSMUST00000107539 5912 ntAPPRIS ALT2 TSL 5 BASIC16.19■□□□□ 0.18
Sh3rf1Q69ZI1 Lrrc56-203ENSMUST00000084446 2390 ntAPPRIS ALT2 TSL 1 (best) BASIC16.19■□□□□ 0.18
Sh3rf1Q69ZI1 Ndufaf8-201ENSMUST00000106223 781 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Sh3rf1Q69ZI1 Gm11950-201ENSMUST00000121615 838 ntBASIC16.19■□□□□ 0.18
Sh3rf1Q69ZI1 Lamtor5-201ENSMUST00000145735 881 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
Sh3rf1Q69ZI1 Gfod2-203ENSMUST00000155038 951 ntTSL 2 BASIC16.19■□□□□ 0.18
Sh3rf1Q69ZI1 Gm28033-201ENSMUST00000184224 96 ntBASIC16.19■□□□□ 0.18
Sh3rf1Q69ZI1 Krt10-202ENSMUST00000211768 557 ntTSL 3 BASIC16.19■□□□□ 0.18
Sh3rf1Q69ZI1 Pdcd2l-201ENSMUST00000002710 1295 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Sh3rf1Q69ZI1 Gmnn-201ENSMUST00000006898 1127 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Sh3rf1Q69ZI1 Plppr5-201ENSMUST00000039564 4670 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Sh3rf1Q69ZI1 Ocln-205ENSMUST00000160859 2443 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Sh3rf1Q69ZI1 Ptprs-201ENSMUST00000067538 6855 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Sh3rf1Q69ZI1 Cpne6-207ENSMUST00000171643 2016 ntAPPRIS P3 TSL 5 BASIC16.19■□□□□ 0.18
Sh3rf1Q69ZI1 Ppp6r2-208ENSMUST00000228284 3297 ntAPPRIS P1 BASIC16.19■□□□□ 0.18
Sh3rf1Q69ZI1 Trim50-201ENSMUST00000065785 1803 ntAPPRIS P2 TSL 1 (best) BASIC16.19■□□□□ 0.18
Sh3rf1Q69ZI1 Wscd1-202ENSMUST00000108510 2956 ntAPPRIS P1 TSL 5 BASIC16.19■□□□□ 0.18
Sh3rf1Q69ZI1 4933427J07Rik-201ENSMUST00000156275 1533 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
Sh3rf1Q69ZI1 Hoxa10-201ENSMUST00000121043 1436 ntAPPRIS P1 TSL 2 BASIC16.19■□□□□ 0.18
Sh3rf1Q69ZI1 Nup98-205ENSMUST00000211022 3132 ntTSL 2 BASIC16.19■□□□□ 0.18
Sh3rf1Q69ZI1 Hacd3-201ENSMUST00000036615 2709 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Sh3rf1Q69ZI1 Samd4-204ENSMUST00000125688 1773 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
Sh3rf1Q69ZI1 Impdh1-205ENSMUST00000160878 2314 ntTSL 5 BASIC16.18■□□□□ 0.18
Sh3rf1Q69ZI1 Jade2-202ENSMUST00000109090 6230 ntAPPRIS ALT2 TSL 1 (best) BASIC16.18■□□□□ 0.18
Sh3rf1Q69ZI1 Bnip2-203ENSMUST00000117450 1465 ntAPPRIS ALT2 TSL 1 (best) BASIC16.18■□□□□ 0.18
Retrieved 100 of 76,532 protein–RNA pairs in 24.1 ms