Protein–RNA interactions for Protein: Q62318

Trim28, Transcription intermediary factor 1-beta, mousemouse

Predictions only

Length 834 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim28Q62318 Meaf6-201ENSMUST00000055213 872 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
Trim28Q62318 Rpl30-202ENSMUST00000079735 886 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Trim28Q62318 Pik3ip1-202ENSMUST00000093399 1098 ntAPPRIS ALT2 TSL 1 (best) BASIC20.67■□□□□ 0.9
Trim28Q62318 Agtr1a-201ENSMUST00000066412 2199 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Trim28Q62318 Igdcc3-201ENSMUST00000034961 3146 ntAPPRIS P2 TSL 1 (best) BASIC20.67■□□□□ 0.9
Trim28Q62318 Best4-ps-201ENSMUST00000129783 1380 ntBASIC20.67■□□□□ 0.9
Trim28Q62318 Foxj2-201ENSMUST00000003238 5283 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Trim28Q62318 Tead3-206ENSMUST00000156862 2573 ntAPPRIS ALT2 TSL 1 (best) BASIC20.67■□□□□ 0.9
Trim28Q62318 Reep4-201ENSMUST00000047218 1565 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Trim28Q62318 Gm38318-201ENSMUST00000195769 1706 ntBASIC20.67■□□□□ 0.9
Trim28Q62318 Taf5l-201ENSMUST00000093039 2912 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Trim28Q62318 Hsd3b2-201ENSMUST00000107021 1788 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Trim28Q62318 Prkcz2-201ENSMUST00000206136 1756 ntBASIC20.67■□□□□ 0.9
Trim28Q62318 Arntl-204ENSMUST00000210238 2976 ntAPPRIS P1 TSL 5 BASIC20.67■□□□□ 0.9
Trim28Q62318 Kat2a-202ENSMUST00000103118 3046 ntAPPRIS P4 TSL 1 (best) BASIC20.67■□□□□ 0.9
Trim28Q62318 Lrch4-201ENSMUST00000031734 3078 ntAPPRIS P3 TSL 1 (best) BASIC20.67■□□□□ 0.9
Trim28Q62318 Msi2-201ENSMUST00000092794 1855 ntAPPRIS P2 TSL 1 (best) BASIC20.67■□□□□ 0.9
Trim28Q62318 Dnase1l2-201ENSMUST00000088506 1921 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Trim28Q62318 Zfp277-201ENSMUST00000069637 2188 ntAPPRIS P3 TSL 1 (best) BASIC20.66■□□□□ 0.9
Trim28Q62318 Vav2-201ENSMUST00000056176 5221 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Trim28Q62318 Dcaf17-203ENSMUST00000112159 2490 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
Trim28Q62318 Epo-202ENSMUST00000111038 855 ntAPPRIS P3 TSL 5 BASIC20.66■□□□□ 0.9
Trim28Q62318 Naa10-203ENSMUST00000114387 979 ntAPPRIS ALT2 TSL 2 BASIC20.66■□□□□ 0.9
Trim28Q62318 Tmem217-201ENSMUST00000114683 904 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Trim28Q62318 Tcp1-207ENSMUST00000143961 614 ntTSL 2 BASIC20.66■□□□□ 0.9
Trim28Q62318 Sirpa-213ENSMUST00000163034 677 ntTSL 3 BASIC20.66■□□□□ 0.9
Trim28Q62318 Gm44945-201ENSMUST00000206764 1187 ntBASIC20.66■□□□□ 0.9
Trim28Q62318 Eif5a-203ENSMUST00000071026 1286 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Trim28Q62318 Lsmem1-201ENSMUST00000095760 1213 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Trim28Q62318 Ttc34-203ENSMUST00000207854 4733 ntAPPRIS ALT2 TSL 5 BASIC20.66■□□□□ 0.9
Trim28Q62318 Ubp1-206ENSMUST00000216558 1623 ntAPPRIS P4 TSL 1 (best) BASIC20.66■□□□□ 0.9
Trim28Q62318 9530082P21Rik-202ENSMUST00000181291 1798 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
Trim28Q62318 Dhodh-201ENSMUST00000123605 2039 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Trim28Q62318 Hira-202ENSMUST00000120532 2063 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
Trim28Q62318 Actr8-201ENSMUST00000016115 2119 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Trim28Q62318 4930448E22Rik-202ENSMUST00000215242 2102 ntTSL 5 BASIC20.66■□□□□ 0.9
Trim28Q62318 Prnp-201ENSMUST00000091288 2184 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Trim28Q62318 Esr1-203ENSMUST00000105589 2612 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Trim28Q62318 Nkx2-1-201ENSMUST00000001536 2809 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Trim28Q62318 Ebf1-203ENSMUST00000109268 2864 ntAPPRIS ALT1 TSL 5 BASIC20.66■□□□□ 0.9
Trim28Q62318 Pard3-219ENSMUST00000162309 5659 ntAPPRIS P3 TSL 1 (best) BASIC20.66■□□□□ 0.9
Trim28Q62318 Zfp367-202ENSMUST00000117241 2753 ntAPPRIS ALT2 TSL 1 (best) BASIC20.65■□□□□ 0.9
Trim28Q62318 Ifnar1-202ENSMUST00000117748 2771 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Trim28Q62318 Dmpk-203ENSMUST00000108474 2591 ntAPPRIS ALT2 TSL 1 (best) BASIC20.65■□□□□ 0.9
Trim28Q62318 Ankrd9-202ENSMUST00000128353 2577 ntAPPRIS P2 TSL 1 (best) BASIC20.65■□□□□ 0.9
Trim28Q62318 Gxylt1-201ENSMUST00000049484 6611 ntAPPRIS P3 TSL 1 (best) BASIC20.65■□□□□ 0.9
Trim28Q62318 Hap1-201ENSMUST00000103124 2120 ntAPPRIS P3 TSL 1 (best) BASIC20.65■□□□□ 0.9
Trim28Q62318 Noc4l-201ENSMUST00000042147 2075 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Trim28Q62318 B4galt3-201ENSMUST00000064272 1998 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Trim28Q62318 Smtnl1-201ENSMUST00000028471 1761 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Trim28Q62318 Ccdc68-201ENSMUST00000043929 1618 ntAPPRIS P2 TSL 1 (best) BASIC20.65■□□□□ 0.9
Trim28Q62318 Trmu-201ENSMUST00000023019 1526 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Trim28Q62318 Cxcl10-202ENSMUST00000118006 1353 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
Trim28Q62318 Galnt6os-201ENSMUST00000160960 1389 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
Trim28Q62318 Abat-202ENSMUST00000115838 1348 ntTSL 2 BASIC20.65■□□□□ 0.9
Trim28Q62318 Vps25-203ENSMUST00000100414 1220 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
Trim28Q62318 Caly-202ENSMUST00000166758 1220 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Trim28Q62318 Gm36584-201ENSMUST00000209046 708 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
Trim28Q62318 Gm45683-201ENSMUST00000210825 1247 ntBASIC20.65■□□□□ 0.9
Trim28Q62318 AC090659.1-201ENSMUST00000224334 768 ntBASIC20.65■□□□□ 0.9
Trim28Q62318 Gnptg-201ENSMUST00000038973 1234 ntAPPRIS P2 TSL 1 (best) BASIC20.65■□□□□ 0.9
Trim28Q62318 6030498E09Rik-201ENSMUST00000050744 1291 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Trim28Q62318 Gm5867-201ENSMUST00000063197 592 ntBASIC20.65■□□□□ 0.9
Trim28Q62318 Fmr1nb-201ENSMUST00000069731 799 ntAPPRIS ALT2 TSL 1 (best) BASIC20.65■□□□□ 0.9
Trim28Q62318 Slbp-202ENSMUST00000075670 1027 ntAPPRIS ALT2 TSL 1 (best) BASIC20.65■□□□□ 0.9
Trim28Q62318 Hist1h3c-201ENSMUST00000091752 630 ntAPPRIS P1 BASIC20.65■□□□□ 0.9
Trim28Q62318 Panx1-202ENSMUST00000164273 5732 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Trim28Q62318 Scarf2-201ENSMUST00000012161 3302 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Trim28Q62318 Stim2-204ENSMUST00000201469 4892 ntAPPRIS ALT2 TSL 5 BASIC20.65■□□□□ 0.9
Trim28Q62318 Mettl21a-201ENSMUST00000053469 2666 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Trim28Q62318 Rnf44-204ENSMUST00000125871 4292 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Trim28Q62318 Trim24-201ENSMUST00000031859 4042 ntAPPRIS P3 TSL 1 (best) BASIC20.65■□□□□ 0.9
Trim28Q62318 Ntrk2-205ENSMUST00000224402 2284 ntBASIC20.65■□□□□ 0.9
Trim28Q62318 Pdk3-201ENSMUST00000045748 2115 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Trim28Q62318 A530084C06Rik-201ENSMUST00000170573 3200 ntAPPRIS P1 BASIC20.65■□□□□ 0.9
Trim28Q62318 Golt1a-201ENSMUST00000094557 1865 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
Trim28Q62318 Ldha-210ENSMUST00000209984 1815 ntTSL 1 (best) BASIC20.64■□□□□ 0.9
Trim28Q62318 Chpt1-203ENSMUST00000117440 4863 ntAPPRIS ALT2 TSL 5 BASIC20.64■□□□□ 0.9
Trim28Q62318 Vill-207ENSMUST00000141185 1645 ntTSL 1 (best) BASIC20.64■□□□□ 0.9
Trim28Q62318 Pdlim1-201ENSMUST00000068439 2571 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
Trim28Q62318 Nrxn2-205ENSMUST00000113462 6667 ntAPPRIS P4 TSL 1 (best) BASIC20.64■□□□□ 0.89
Trim28Q62318 Kctd10-201ENSMUST00000001125 1026 ntAPPRIS ALT1 TSL 5 BASIC20.64■□□□□ 0.89
Trim28Q62318 Cmtm8-201ENSMUST00000047013 1064 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
Trim28Q62318 Ttyh3-202ENSMUST00000197452 4576 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
Trim28Q62318 Mettl16-201ENSMUST00000010698 2073 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
Trim28Q62318 E130307A14Rik-213ENSMUST00000155482 2803 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
Trim28Q62318 Ankrd23-201ENSMUST00000054665 1964 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
Trim28Q62318 Cnih3-201ENSMUST00000027795 2668 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
Trim28Q62318 Rd3-203ENSMUST00000181512 1760 ntTSL 5 BASIC20.64■□□□□ 0.89
Trim28Q62318 Pde8b-214ENSMUST00000172104 2493 ntAPPRIS ALT2 TSL 5 BASIC20.64■□□□□ 0.89
Trim28Q62318 Slc44a1-201ENSMUST00000102911 3102 ntAPPRIS P2 TSL 1 (best) BASIC20.64■□□□□ 0.89
Trim28Q62318 Ip6k2-206ENSMUST00000193560 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC20.64■□□□□ 0.89
Trim28Q62318 Ube2d2b-201ENSMUST00000072578 1678 ntAPPRIS P1 BASIC20.64■□□□□ 0.89
Trim28Q62318 Rabggta-201ENSMUST00000062861 2338 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
Trim28Q62318 Gm7669-201ENSMUST00000210184 1603 ntBASIC20.64■□□□□ 0.89
Trim28Q62318 C920006O11Rik-201ENSMUST00000180974 1444 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
Trim28Q62318 Tnfrsf13c-202ENSMUST00000109535 1983 ntAPPRIS ALT2 TSL 1 (best) BASIC20.63■□□□□ 0.89
Trim28Q62318 Slc35e3-201ENSMUST00000079041 3489 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Trim28Q62318 Stk3-201ENSMUST00000018476 2914 ntAPPRIS P2 TSL 1 (best) BASIC20.63■□□□□ 0.89
Trim28Q62318 Mef2b-203ENSMUST00000110143 1312 ntAPPRIS ALT2 TSL 1 (best) BASIC20.63■□□□□ 0.89
Retrieved 100 of 76,532 protein–RNA pairs in 21.4 ms