Protein–RNA interactions for Protein: Q62226

Shh, Sonic hedgehog protein, mousemouse

Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ShhQ62226 Cdc27-202ENSMUST00000106961 1863 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
ShhQ62226 Slco3a1-201ENSMUST00000026897 4589 ntAPPRIS P4 TSL 1 (best) BASIC14.87□□□□□ -0.03
ShhQ62226 Sh2b3-201ENSMUST00000040308 2530 ntAPPRIS P3 TSL 1 (best) BASIC14.87□□□□□ -0.03
ShhQ62226 Urgcp-201ENSMUST00000053427 5527 ntAPPRIS ALT2 TSL 5 BASIC14.87□□□□□ -0.03
ShhQ62226 Ndufs7-202ENSMUST00000105364 983 ntAPPRIS P1 TSL 5 BASIC14.87□□□□□ -0.03
ShhQ62226 Gm128-202ENSMUST00000107197 1289 ntTSL 2 BASIC14.87□□□□□ -0.03
ShhQ62226 2810030D12Rik-203ENSMUST00000190461 1039 ntBASIC14.87□□□□□ -0.03
ShhQ62226 Gm18421-201ENSMUST00000204122 625 ntBASIC14.87□□□□□ -0.03
ShhQ62226 Tmem128-201ENSMUST00000087511 1291 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
ShhQ62226 Tmem132c-201ENSMUST00000119026 5134 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
ShhQ62226 Layn-201ENSMUST00000098782 1786 ntAPPRIS P2 TSL 5 BASIC14.87□□□□□ -0.03
ShhQ62226 Ppfia3-207ENSMUST00000211067 4565 ntAPPRIS P1 TSL 5 BASIC14.87□□□□□ -0.03
ShhQ62226 Gm26627-201ENSMUST00000181540 1487 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
ShhQ62226 Fbxl21-201ENSMUST00000045428 1965 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
ShhQ62226 Miga1-205ENSMUST00000199397 2842 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
ShhQ62226 Fscn1-207ENSMUST00000198017 2157 ntTSL 5 BASIC14.87□□□□□ -0.03
ShhQ62226 Gnal-201ENSMUST00000025402 5616 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
ShhQ62226 Cadps2-202ENSMUST00000069074 3935 ntTSL 5 BASIC14.86□□□□□ -0.03
ShhQ62226 Zfp384-207ENSMUST00000112427 3072 ntAPPRIS P2 TSL 5 BASIC14.86□□□□□ -0.03
ShhQ62226 Dtd1-201ENSMUST00000028917 1350 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
ShhQ62226 Rasgef1b-205ENSMUST00000161148 2430 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
ShhQ62226 Ubr2-202ENSMUST00000113337 7633 ntAPPRIS P3 TSL 1 (best) BASIC14.86□□□□□ -0.03
ShhQ62226 Rfx5-201ENSMUST00000029772 4189 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
ShhQ62226 Zfp264-201ENSMUST00000208656 1563 ntBASIC14.86□□□□□ -0.03
ShhQ62226 Dgkz-202ENSMUST00000099709 3512 ntAPPRIS ALT2 TSL 5 BASIC14.86□□□□□ -0.03
ShhQ62226 Dcaf17-203ENSMUST00000112159 2490 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
ShhQ62226 Tmem267-205ENSMUST00000223912 1789 ntAPPRIS P1 BASIC14.86□□□□□ -0.03
ShhQ62226 Rbm11-201ENSMUST00000046378 1400 ntAPPRIS P2 TSL 5 BASIC14.86□□□□□ -0.03
ShhQ62226 Ppp3cb-206ENSMUST00000161989 2322 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
ShhQ62226 Disc1-206ENSMUST00000118942 2860 ntAPPRIS ALT2 TSL 1 (best) BASIC14.86□□□□□ -0.03
ShhQ62226 Apbb1-205ENSMUST00000187057 1630 ntTSL 5 BASIC14.86□□□□□ -0.03
ShhQ62226 Lrfn1-202ENSMUST00000108288 3060 ntAPPRIS ALT2 TSL 1 (best) BASIC14.86□□□□□ -0.03
ShhQ62226 Agtr1a-201ENSMUST00000066412 2199 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
ShhQ62226 Gm13327-201ENSMUST00000133391 2741 ntTSL 5 BASIC14.86□□□□□ -0.03
ShhQ62226 Dguok-202ENSMUST00000113888 1007 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
ShhQ62226 Dguok-201ENSMUST00000014698 1107 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
ShhQ62226 Gm2756-201ENSMUST00000195851 400 ntBASIC14.86□□□□□ -0.03
ShhQ62226 Gm6296-201ENSMUST00000222599 943 ntBASIC14.86□□□□□ -0.03
ShhQ62226 Hist1h2ad-201ENSMUST00000090776 572 ntAPPRIS P1 BASIC14.86□□□□□ -0.03
ShhQ62226 Col11a2-201ENSMUST00000087497 6048 ntAPPRIS P2 TSL 2 BASIC14.86□□□□□ -0.03
ShhQ62226 Wdr55-201ENSMUST00000049323 1498 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
ShhQ62226 Inpp5e-202ENSMUST00000114090 2790 ntAPPRIS ALT2 TSL 1 (best) BASIC14.86□□□□□ -0.03
ShhQ62226 Rflna-201ENSMUST00000036109 1681 ntAPPRIS P1 TSL 5 BASIC14.86□□□□□ -0.03
ShhQ62226 Ror1-201ENSMUST00000039630 5762 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
ShhQ62226 Bmt2-202ENSMUST00000203078 4462 ntAPPRIS ALT2 TSL 1 (best) BASIC14.86□□□□□ -0.03
ShhQ62226 Mapk14-204ENSMUST00000114754 3592 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
ShhQ62226 Nkx2-1-201ENSMUST00000001536 2809 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
ShhQ62226 Ggnbp2-203ENSMUST00000108081 3034 ntAPPRIS P2 TSL 5 BASIC14.86□□□□□ -0.03
ShhQ62226 Nek2-201ENSMUST00000027931 3227 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
ShhQ62226 Nedd4l-202ENSMUST00000163516 8163 ntAPPRIS P1 TSL 5 BASIC14.86□□□□□ -0.03
ShhQ62226 Rhd-201ENSMUST00000030627 1514 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
ShhQ62226 Mier2-203ENSMUST00000165028 2676 ntAPPRIS ALT2 TSL 1 (best) BASIC14.86□□□□□ -0.03
ShhQ62226 Pde8b-208ENSMUST00000162292 4235 ntAPPRIS P2 TSL 1 (best) BASIC14.86□□□□□ -0.03
ShhQ62226 Slc11a1-201ENSMUST00000027368 2315 ntAPPRIS P2 TSL 1 (best) BASIC14.86□□□□□ -0.03
ShhQ62226 Ykt6-201ENSMUST00000002818 2541 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
ShhQ62226 Slc27a1-207ENSMUST00000212889 2730 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
ShhQ62226 Tmem28-201ENSMUST00000096363 3909 ntAPPRIS P1 TSL 5 BASIC14.86□□□□□ -0.03
ShhQ62226 Ager-201ENSMUST00000015596 1370 ntAPPRIS P3 TSL 1 (best) BASIC14.85□□□□□ -0.03
ShhQ62226 Flot1-209ENSMUST00000174080 1383 ntTSL 5 BASIC14.85□□□□□ -0.03
ShhQ62226 Rnf103-202ENSMUST00000114178 3431 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
ShhQ62226 Ruvbl2-201ENSMUST00000107771 1834 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
ShhQ62226 Rad23a-202ENSMUST00000109761 1842 ntAPPRIS ALT1 TSL 1 (best) BASIC14.85□□□□□ -0.03
ShhQ62226 Nrn1-201ENSMUST00000037623 1619 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
ShhQ62226 H2-DMb1-201ENSMUST00000114232 1404 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
ShhQ62226 Rgl2-201ENSMUST00000047503 3252 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
ShhQ62226 Taco1os-201ENSMUST00000140736 644 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
ShhQ62226 Gm13431-203ENSMUST00000147012 388 ntTSL 2 BASIC14.85□□□□□ -0.03
ShhQ62226 Gm26695-201ENSMUST00000180920 1251 ntTSL 5 BASIC14.85□□□□□ -0.03
ShhQ62226 Gm37280-201ENSMUST00000194583 375 ntTSL 3 BASIC14.85□□□□□ -0.03
ShhQ62226 AL731706.1-201ENSMUST00000227806 944 ntAPPRIS ALT2 BASIC14.85□□□□□ -0.03
ShhQ62226 Lce3b-201ENSMUST00000046234 562 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
ShhQ62226 Gpr150-201ENSMUST00000056130 2146 ntAPPRIS P1 BASIC14.85□□□□□ -0.03
ShhQ62226 Rabl6-201ENSMUST00000058137 3230 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
ShhQ62226 Tll1-201ENSMUST00000066166 4767 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
ShhQ62226 Kpna4-203ENSMUST00000194558 3726 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
ShhQ62226 Tmem214-201ENSMUST00000114716 2220 ntAPPRIS ALT2 TSL 5 BASIC14.85□□□□□ -0.03
ShhQ62226 Lcmt2-201ENSMUST00000099486 2047 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
ShhQ62226 Neil3-201ENSMUST00000047768 2253 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
ShhQ62226 Tex261-201ENSMUST00000014892 2984 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
ShhQ62226 Mtx2-201ENSMUST00000028511 2950 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
ShhQ62226 Raxos1-201ENSMUST00000181100 2547 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
ShhQ62226 Rims3-201ENSMUST00000071093 6505 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
ShhQ62226 Ptprn-201ENSMUST00000027404 3554 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
ShhQ62226 Snx9-201ENSMUST00000002436 2411 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
ShhQ62226 H2-Q10-202ENSMUST00000174525 1991 ntAPPRIS P1 TSL 5 BASIC14.84□□□□□ -0.03
ShhQ62226 Nsmce3-201ENSMUST00000094331 5946 ntAPPRIS P1 BASIC14.84□□□□□ -0.03
ShhQ62226 Mcoln2-202ENSMUST00000098524 2492 ntAPPRIS ALT2 TSL 1 (best) BASIC14.84□□□□□ -0.03
ShhQ62226 Wscd1-202ENSMUST00000108510 2956 ntAPPRIS P1 TSL 5 BASIC14.84□□□□□ -0.03
ShhQ62226 Rassf1-204ENSMUST00000122225 1783 ntTSL 5 BASIC14.84□□□□□ -0.03
ShhQ62226 Mfsd4b3-201ENSMUST00000095749 1787 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
ShhQ62226 Iqck-201ENSMUST00000098087 1503 ntAPPRIS ALT2 TSL 5 BASIC14.84□□□□□ -0.03
ShhQ62226 Ndufb6-202ENSMUST00000108108 480 ntTSL 3 BASIC14.84□□□□□ -0.03
ShhQ62226 Ascl2-202ENSMUST00000121862 814 ntAPPRIS ALT2 BASIC14.84□□□□□ -0.03
ShhQ62226 Plpp7-202ENSMUST00000140762 634 ntTSL 3 BASIC14.84□□□□□ -0.03
ShhQ62226 Smarca5-ps-202ENSMUST00000171805 1284 ntBASIC14.84□□□□□ -0.03
ShhQ62226 Sbsn-202ENSMUST00000182227 432 ntAPPRIS ALT2 TSL 5 BASIC14.84□□□□□ -0.03
ShhQ62226 Sbsn-203ENSMUST00000182229 732 ntAPPRIS ALT2 TSL 1 (best) BASIC14.84□□□□□ -0.03
ShhQ62226 Gm28402-201ENSMUST00000188574 373 ntTSL 3 BASIC14.84□□□□□ -0.03
ShhQ62226 Gm19935-201ENSMUST00000209208 979 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
ShhQ62226 Slbp-202ENSMUST00000075670 1027 ntAPPRIS ALT2 TSL 1 (best) BASIC14.84□□□□□ -0.03
Retrieved 100 of 76,532 protein–RNA pairs in 18.7 ms