Protein–RNA interactions for Protein: Q3U827

Rnf180, E3 ubiquitin-protein ligase RNF180, mousemouse

Predictions only

Length 592 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rnf180Q3U827 Otud7a-201ENSMUST00000058476 3483 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Rnf180Q3U827 Nol4l-201ENSMUST00000035346 6399 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Rnf180Q3U827 Atp6v1c1-201ENSMUST00000022904 2071 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Rnf180Q3U827 Krt79-201ENSMUST00000023799 2097 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Rnf180Q3U827 Atf1-201ENSMUST00000023769 2365 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Rnf180Q3U827 Lsr-202ENSMUST00000098553 1930 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
Rnf180Q3U827 Pdss2-202ENSMUST00000159139 1467 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
Rnf180Q3U827 Pebp1-202ENSMUST00000111973 779 ntTSL 3 BASIC18.67■□□□□ 0.58
Rnf180Q3U827 Unc50-202ENSMUST00000114925 1094 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Rnf180Q3U827 Gm7030-203ENSMUST00000173322 913 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Rnf180Q3U827 Gm26602-201ENSMUST00000181321 285 ntAPPRIS P1 BASIC18.67■□□□□ 0.58
Rnf180Q3U827 Gm20753-201ENSMUST00000190105 545 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
Rnf180Q3U827 Gm29541-201ENSMUST00000191351 678 ntBASIC18.67■□□□□ 0.58
Rnf180Q3U827 Gm37267-201ENSMUST00000194222 681 ntTSL 2 BASIC18.67■□□□□ 0.58
Rnf180Q3U827 Hsd17b14-205ENSMUST00000210300 797 ntTSL 5 BASIC18.67■□□□□ 0.58
Rnf180Q3U827 Gm7030-201ENSMUST00000046131 913 ntAPPRIS P1 TSL 5 BASIC18.67■□□□□ 0.58
Rnf180Q3U827 Pdlim7-203ENSMUST00000069968 1006 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
Rnf180Q3U827 Cdca4-202ENSMUST00000220899 1994 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Rnf180Q3U827 Ptprf-201ENSMUST00000049074 7656 ntAPPRIS P1 TSL 5 BASIC18.67■□□□□ 0.58
Rnf180Q3U827 Gm20708-201ENSMUST00000132298 1780 ntAPPRIS P1 TSL 2 BASIC18.67■□□□□ 0.58
Rnf180Q3U827 Celf6-203ENSMUST00000118549 2973 ntAPPRIS ALT2 TSL 5 BASIC18.67■□□□□ 0.58
Rnf180Q3U827 Parp12-201ENSMUST00000038398 3231 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Rnf180Q3U827 Stx2-202ENSMUST00000100680 2769 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
Rnf180Q3U827 Stk32c-202ENSMUST00000165870 1883 ntTSL 5 BASIC18.67■□□□□ 0.58
Rnf180Q3U827 Skor2-201ENSMUST00000166956 3141 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Rnf180Q3U827 Fggy-202ENSMUST00000079223 1891 ntAPPRIS P1 TSL 5 BASIC18.67■□□□□ 0.58
Rnf180Q3U827 Gm11532-201ENSMUST00000128111 5272 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
Rnf180Q3U827 Bhlhe23-201ENSMUST00000108878 2520 ntAPPRIS P1 BASIC18.66■□□□□ 0.58
Rnf180Q3U827 Rac1-202ENSMUST00000100489 2325 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
Rnf180Q3U827 Hand1-203ENSMUST00000160392 1806 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Rnf180Q3U827 Rasgrp2-205ENSMUST00000113471 535 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
Rnf180Q3U827 Mir1247-201ENSMUST00000116706 82 ntBASIC18.66■□□□□ 0.58
Rnf180Q3U827 Gm12264-201ENSMUST00000123949 500 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
Rnf180Q3U827 Gm15420-201ENSMUST00000133274 382 ntTSL 3 BASIC18.66■□□□□ 0.58
Rnf180Q3U827 Olfr455-201ENSMUST00000171307 954 ntAPPRIS P1 BASIC18.66■□□□□ 0.58
Rnf180Q3U827 Ndufs6-203ENSMUST00000222930 512 ntTSL 3 BASIC18.66■□□□□ 0.58
Rnf180Q3U827 Lamtor2-201ENSMUST00000029698 668 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Rnf180Q3U827 Gfra1-208ENSMUST00000152507 1937 ntAPPRIS P1 TSL 5 BASIC18.66■□□□□ 0.58
Rnf180Q3U827 5730507C01Rik-202ENSMUST00000177778 2542 ntAPPRIS ALT2 TSL 1 (best) BASIC18.66■□□□□ 0.58
Rnf180Q3U827 Gmppa-202ENSMUST00000113584 1692 ntAPPRIS P1 TSL 5 BASIC18.66■□□□□ 0.58
Rnf180Q3U827 Klrg1-201ENSMUST00000032207 1414 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Rnf180Q3U827 Gfy-201ENSMUST00000179443 1849 ntAPPRIS P1 TSL 5 BASIC18.65■□□□□ 0.58
Rnf180Q3U827 Asic1-205ENSMUST00000228185 1818 ntBASIC18.65■□□□□ 0.58
Rnf180Q3U827 Tbc1d2-202ENSMUST00000107750 1941 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
Rnf180Q3U827 Cdkl3-204ENSMUST00000109077 2605 ntAPPRIS ALT2 TSL 5 BASIC18.65■□□□□ 0.58
Rnf180Q3U827 Fam189a1-201ENSMUST00000119118 4801 ntAPPRIS P1 TSL 5 BASIC18.65■□□□□ 0.58
Rnf180Q3U827 Slc35f4-202ENSMUST00000123534 2748 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
Rnf180Q3U827 Gm15806-201ENSMUST00000120696 955 ntBASIC18.65■□□□□ 0.58
Rnf180Q3U827 Chchd7-207ENSMUST00000121210 548 ntTSL 2 BASIC18.65■□□□□ 0.58
Rnf180Q3U827 Gm11918-201ENSMUST00000121660 179 ntBASIC18.65■□□□□ 0.58
Rnf180Q3U827 Myl3-203ENSMUST00000136695 614 ntAPPRIS ALT2 TSL 3 BASIC18.65■□□□□ 0.58
Rnf180Q3U827 Gm12454-201ENSMUST00000139119 978 ntTSL 2 BASIC18.65■□□□□ 0.58
Rnf180Q3U827 Gm13134-202ENSMUST00000144347 387 ntTSL 2 BASIC18.65■□□□□ 0.58
Rnf180Q3U827 Gm29667-201ENSMUST00000190817 490 ntBASIC18.65■□□□□ 0.58
Rnf180Q3U827 Sectm1a-203ENSMUST00000106119 1302 ntAPPRIS ALT2 TSL 1 (best) BASIC18.65■□□□□ 0.58
Rnf180Q3U827 Vav2-201ENSMUST00000056176 5221 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Rnf180Q3U827 Ykt6-201ENSMUST00000002818 2541 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Rnf180Q3U827 AC154231.1-201ENSMUST00000220564 2175 ntBASIC18.65■□□□□ 0.58
Rnf180Q3U827 Relb-202ENSMUST00000094762 2209 ntAPPRIS P3 TSL 1 (best) BASIC18.65■□□□□ 0.58
Rnf180Q3U827 Mff-202ENSMUST00000078332 1894 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Rnf180Q3U827 Vhl-201ENSMUST00000035673 2792 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.58
Rnf180Q3U827 Spns2-201ENSMUST00000045303 3241 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.58
Rnf180Q3U827 Snx9-201ENSMUST00000002436 2411 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.58
Rnf180Q3U827 Usp21-201ENSMUST00000065941 2219 ntAPPRIS P2 TSL 1 (best) BASIC18.64■□□□□ 0.57
Rnf180Q3U827 Cbx6-203ENSMUST00000109627 5806 ntAPPRIS P2 TSL 1 (best) BASIC18.64■□□□□ 0.57
Rnf180Q3U827 H2-Q4-201ENSMUST00000081435 1793 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
Rnf180Q3U827 Gm14042-201ENSMUST00000120139 833 ntBASIC18.64■□□□□ 0.57
Rnf180Q3U827 Gm16175-201ENSMUST00000128181 248 ntTSL 3 BASIC18.64■□□□□ 0.57
Rnf180Q3U827 Flt3l-201ENSMUST00000146760 1075 ntAPPRIS P2 TSL 1 (best) BASIC18.64■□□□□ 0.57
Rnf180Q3U827 4930573H18Rik-201ENSMUST00000197696 906 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
Rnf180Q3U827 Apoa5-203ENSMUST00000213878 727 ntTSL 3 BASIC18.64■□□□□ 0.57
Rnf180Q3U827 Timm9-206ENSMUST00000221367 836 ntAPPRIS P1 TSL 5 BASIC18.64■□□□□ 0.57
Rnf180Q3U827 Dcun1d1-201ENSMUST00000108182 4980 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
Rnf180Q3U827 Rabepk-203ENSMUST00000118108 1431 ntAPPRIS P1 TSL 5 BASIC18.64■□□□□ 0.57
Rnf180Q3U827 Dbnl-203ENSMUST00000109845 2001 ntAPPRIS ALT2 TSL 1 (best) BASIC18.64■□□□□ 0.57
Rnf180Q3U827 Lrrc43-201ENSMUST00000094327 2046 ntAPPRIS P3 TSL 1 (best) BASIC18.64■□□□□ 0.57
Rnf180Q3U827 Chrna4-202ENSMUST00000108851 2071 ntAPPRIS ALT2 TSL 5 BASIC18.64■□□□□ 0.57
Rnf180Q3U827 Il17rb-201ENSMUST00000016110 2061 ntAPPRIS P2 TSL 1 (best) BASIC18.64■□□□□ 0.57
Rnf180Q3U827 Gid8-201ENSMUST00000029090 1655 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Rnf180Q3U827 Hpn-201ENSMUST00000039435 1743 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
Rnf180Q3U827 Tbc1d9-202ENSMUST00000093393 5334 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Rnf180Q3U827 Ssx2ip-203ENSMUST00000106151 3232 ntAPPRIS ALT2 TSL 1 (best) BASIC18.63■□□□□ 0.57
Rnf180Q3U827 Gm11620-201ENSMUST00000118770 1845 ntBASIC18.63■□□□□ 0.57
Rnf180Q3U827 Lenep-201ENSMUST00000057431 1806 ntAPPRIS P1 BASIC18.63■□□□□ 0.57
Rnf180Q3U827 Dhx36-201ENSMUST00000029336 5620 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Rnf180Q3U827 Negr1-201ENSMUST00000041425 2095 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
Rnf180Q3U827 1700049J03Rik-201ENSMUST00000011196 421 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
Rnf180Q3U827 Olfr55-201ENSMUST00000112168 948 ntAPPRIS P1 BASIC18.63■□□□□ 0.57
Rnf180Q3U827 Pole-203ENSMUST00000112482 747 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
Rnf180Q3U827 Smim22-206ENSMUST00000184256 381 ntTSL 3 BASIC18.63■□□□□ 0.57
Rnf180Q3U827 1700080E11Rik-202ENSMUST00000190661 682 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
Rnf180Q3U827 4930592C13Rik-201ENSMUST00000196791 661 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
Rnf180Q3U827 C030018K13Rik-202ENSMUST00000196829 712 ntTSL 3 BASIC18.63■□□□□ 0.57
Rnf180Q3U827 4933437G19Rik-201ENSMUST00000197910 1178 ntBASIC18.63■□□□□ 0.57
Rnf180Q3U827 Gm15406-202ENSMUST00000202229 767 ntTSL 2 BASIC18.63■□□□□ 0.57
Rnf180Q3U827 AC158538.2-201ENSMUST00000225455 906 ntBASIC18.63■□□□□ 0.57
Rnf180Q3U827 1700123K08Rik-201ENSMUST00000031501 1047 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Rnf180Q3U827 Fxyd1-202ENSMUST00000071697 522 ntAPPRIS P1 TSL 3 BASIC18.63■□□□□ 0.57
Rnf180Q3U827 Igsf8-202ENSMUST00000085912 2182 ntAPPRIS P1 TSL 5 BASIC18.63■□□□□ 0.57
Rnf180Q3U827 Whamm-201ENSMUST00000165460 3069 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Retrieved 100 of 76,532 protein–RNA pairs in 25.6 ms