Protein–RNA interactions for Protein: Q3U1J4

Ddb1, DNA damage-binding protein 1, mousemouse

Known RBP Predictions only

Length 1,140 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddb1Q3U1J4 Gm42560-201ENSMUST00000201216 1023 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
Ddb1Q3U1J4 Ino80e-214ENSMUST00000206349 883 ntTSL 2 BASIC20.22■□□□□ 0.83
Ddb1Q3U1J4 Gm10073-201ENSMUST00000073722 496 ntAPPRIS P1 BASIC20.22■□□□□ 0.83
Ddb1Q3U1J4 Rplp1-201ENSMUST00000008036 499 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Ddb1Q3U1J4 Nutf2-201ENSMUST00000008594 948 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Ddb1Q3U1J4 Ldha-210ENSMUST00000209984 1815 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
Ddb1Q3U1J4 Agk-201ENSMUST00000031977 2531 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Ddb1Q3U1J4 Ccdc6-203ENSMUST00000147545 5511 ntAPPRIS P1 TSL 5 BASIC20.22■□□□□ 0.83
Ddb1Q3U1J4 Cadm1-204ENSMUST00000114548 4482 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
Ddb1Q3U1J4 Ppp1r1a-201ENSMUST00000023133 1306 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Ddb1Q3U1J4 Bcl9l-206ENSMUST00000220303 5760 ntAPPRIS ALT2 TSL 1 (best) BASIC20.22■□□□□ 0.83
Ddb1Q3U1J4 Eepd1-201ENSMUST00000040677 2723 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Ddb1Q3U1J4 Zbtb46-202ENSMUST00000087409 2577 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
Ddb1Q3U1J4 Zxdc-203ENSMUST00000113539 4864 ntAPPRIS ALT2 TSL 1 (best) BASIC20.21■□□□□ 0.83
Ddb1Q3U1J4 Gm42939-201ENSMUST00000197514 2205 ntBASIC20.21■□□□□ 0.83
Ddb1Q3U1J4 St7l-202ENSMUST00000106769 2428 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
Ddb1Q3U1J4 Ptpra-201ENSMUST00000028769 3227 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Ddb1Q3U1J4 0610010K14Rik-204ENSMUST00000102569 778 ntAPPRIS P3 TSL 1 (best) BASIC20.21■□□□□ 0.83
Ddb1Q3U1J4 Hist1h4k-201ENSMUST00000102983 312 ntAPPRIS P1 BASIC20.21■□□□□ 0.83
Ddb1Q3U1J4 Ncr3-ps-201ENSMUST00000134687 525 ntBASIC20.21■□□□□ 0.83
Ddb1Q3U1J4 Gm15758-201ENSMUST00000161681 695 ntTSL 5 BASIC20.21■□□□□ 0.83
Ddb1Q3U1J4 Gm18246-201ENSMUST00000221023 728 ntBASIC20.21■□□□□ 0.83
Ddb1Q3U1J4 Mrpl4-201ENSMUST00000003386 1288 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Ddb1Q3U1J4 B4galt5-201ENSMUST00000109221 4210 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Ddb1Q3U1J4 CT025626.1-201ENSMUST00000223735 1455 ntBASIC20.21■□□□□ 0.83
Ddb1Q3U1J4 P4ha2-215ENSMUST00000174616 2094 ntTSL 5 BASIC20.21■□□□□ 0.83
Ddb1Q3U1J4 Agap3-205ENSMUST00000199856 2685 ntTSL 5 BASIC20.21■□□□□ 0.83
Ddb1Q3U1J4 AC126250.1-201ENSMUST00000228343 1768 ntBASIC20.21■□□□□ 0.83
Ddb1Q3U1J4 A130051J06Rik-201ENSMUST00000180649 2618 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
Ddb1Q3U1J4 Nudt18-203ENSMUST00000228768 1578 ntBASIC20.21■□□□□ 0.83
Ddb1Q3U1J4 2210016L21Rik-201ENSMUST00000031538 2607 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Ddb1Q3U1J4 Sulf2-201ENSMUST00000088086 3927 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Ddb1Q3U1J4 Rnf220-203ENSMUST00000102690 1842 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
Ddb1Q3U1J4 Wdr45-201ENSMUST00000043045 1609 ntAPPRIS P2 TSL 1 (best) BASIC20.2■□□□□ 0.82
Ddb1Q3U1J4 Coro1a-202ENSMUST00000106364 1747 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Ddb1Q3U1J4 Dcp1b-201ENSMUST00000073909 1748 ntAPPRIS ALT2 TSL 1 (best) BASIC20.2■□□□□ 0.82
Ddb1Q3U1J4 Wtap-205ENSMUST00000160781 2442 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
Ddb1Q3U1J4 Hist1h2br-202ENSMUST00000110476 381 ntAPPRIS P1 BASIC20.2■□□□□ 0.82
Ddb1Q3U1J4 Mdk-204ENSMUST00000111309 771 ntAPPRIS P1 TSL 2 BASIC20.2■□□□□ 0.82
Ddb1Q3U1J4 Hoxa13-202ENSMUST00000114416 769 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
Ddb1Q3U1J4 Gm14321-202ENSMUST00000139927 351 ntTSL 5 BASIC20.2■□□□□ 0.82
Ddb1Q3U1J4 Gnb4-208ENSMUST00000193050 423 ntTSL 5 BASIC20.2■□□□□ 0.82
Ddb1Q3U1J4 Atf5-203ENSMUST00000209072 595 ntTSL 5 BASIC20.2■□□□□ 0.82
Ddb1Q3U1J4 Ccdc182-201ENSMUST00000037268 1204 ntAPPRIS P1 BASIC20.2■□□□□ 0.82
Ddb1Q3U1J4 Hist1h2bq-201ENSMUST00000078156 381 ntAPPRIS P1 BASIC20.2■□□□□ 0.82
Ddb1Q3U1J4 Nrbp1-207ENSMUST00000202576 2221 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
Ddb1Q3U1J4 Nrbp1-201ENSMUST00000031034 2203 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Ddb1Q3U1J4 Mid1ip1-202ENSMUST00000115524 2022 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Ddb1Q3U1J4 Mid1ip1-201ENSMUST00000008179 2019 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Ddb1Q3U1J4 Pcdhac2-201ENSMUST00000047479 5888 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Ddb1Q3U1J4 Agfg1-204ENSMUST00000186302 2352 ntAPPRIS ALT1 TSL 5 BASIC20.2■□□□□ 0.82
Ddb1Q3U1J4 Slc10a3-202ENSMUST00000073067 1910 ntAPPRIS P2 TSL 1 (best) BASIC20.19■□□□□ 0.82
Ddb1Q3U1J4 Ddx39-201ENSMUST00000019576 1656 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Ddb1Q3U1J4 Atp6v1c2-208ENSMUST00000221129 1425 ntAPPRIS P1 TSL 5 BASIC20.19■□□□□ 0.82
Ddb1Q3U1J4 Spdef-205ENSMUST00000167489 1708 ntAPPRIS P1 TSL 5 BASIC20.19■□□□□ 0.82
Ddb1Q3U1J4 Gm22065-201ENSMUST00000103753 110 ntBASIC20.19■□□□□ 0.82
Ddb1Q3U1J4 Gm22066-201ENSMUST00000103761 110 ntBASIC20.19■□□□□ 0.82
Ddb1Q3U1J4 Gm24932-201ENSMUST00000103763 110 ntBASIC20.19■□□□□ 0.82
Ddb1Q3U1J4 Gm24115-201ENSMUST00000103799 110 ntBASIC20.19■□□□□ 0.82
Ddb1Q3U1J4 Gm22190-201ENSMUST00000103827 110 ntBASIC20.19■□□□□ 0.82
Ddb1Q3U1J4 Gm22191-201ENSMUST00000103831 110 ntBASIC20.19■□□□□ 0.82
Ddb1Q3U1J4 Gm24721-201ENSMUST00000103849 110 ntBASIC20.19■□□□□ 0.82
Ddb1Q3U1J4 Gm28018-201ENSMUST00000103869 110 ntBASIC20.19■□□□□ 0.82
Ddb1Q3U1J4 Gm26399-201ENSMUST00000103937 110 ntBASIC20.19■□□□□ 0.82
Ddb1Q3U1J4 Dhdds-202ENSMUST00000105885 998 ntTSL 5 BASIC20.19■□□□□ 0.82
Ddb1Q3U1J4 Il15ra-206ENSMUST00000114834 784 ntAPPRIS ALT2 TSL 1 (best) BASIC20.19■□□□□ 0.82
Ddb1Q3U1J4 Gm17251-201ENSMUST00000170103 925 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
Ddb1Q3U1J4 Erdr1-202ENSMUST00000177671 708 ntAPPRIS ALT2 TSL 5 BASIC20.19■□□□□ 0.82
Ddb1Q3U1J4 Gm25349-201ENSMUST00000177728 110 ntBASIC20.19■□□□□ 0.82
Ddb1Q3U1J4 Gm23616-201ENSMUST00000177797 110 ntBASIC20.19■□□□□ 0.82
Ddb1Q3U1J4 Gm25871-201ENSMUST00000177816 110 ntBASIC20.19■□□□□ 0.82
Ddb1Q3U1J4 Gm24752-201ENSMUST00000178240 110 ntBASIC20.19■□□□□ 0.82
Ddb1Q3U1J4 Gm24496-201ENSMUST00000178287 110 ntBASIC20.19■□□□□ 0.82
Ddb1Q3U1J4 Gm25649-201ENSMUST00000178476 110 ntBASIC20.19■□□□□ 0.82
Ddb1Q3U1J4 Gm25548-201ENSMUST00000178681 110 ntBASIC20.19■□□□□ 0.82
Ddb1Q3U1J4 Gm23147-201ENSMUST00000178841 110 ntBASIC20.19■□□□□ 0.82
Ddb1Q3U1J4 Gm26095-201ENSMUST00000179270 110 ntBASIC20.19■□□□□ 0.82
Ddb1Q3U1J4 Gm22171-201ENSMUST00000179283 110 ntBASIC20.19■□□□□ 0.82
Ddb1Q3U1J4 Gm23936-201ENSMUST00000179354 110 ntBASIC20.19■□□□□ 0.82
Ddb1Q3U1J4 Gm22619-201ENSMUST00000179516 110 ntBASIC20.19■□□□□ 0.82
Ddb1Q3U1J4 Gm25255-201ENSMUST00000179579 110 ntBASIC20.19■□□□□ 0.82
Ddb1Q3U1J4 Gm24755-201ENSMUST00000179691 110 ntBASIC20.19■□□□□ 0.82
Ddb1Q3U1J4 Gm26506-201ENSMUST00000179692 110 ntBASIC20.19■□□□□ 0.82
Ddb1Q3U1J4 Gm25086-201ENSMUST00000179931 110 ntBASIC20.19■□□□□ 0.82
Ddb1Q3U1J4 Gm23243-201ENSMUST00000180047 110 ntBASIC20.19■□□□□ 0.82
Ddb1Q3U1J4 Gm24659-201ENSMUST00000180212 110 ntBASIC20.19■□□□□ 0.82
Ddb1Q3U1J4 Gm24169-201ENSMUST00000180244 110 ntBASIC20.19■□□□□ 0.82
Ddb1Q3U1J4 Gm23689-201ENSMUST00000180354 110 ntBASIC20.19■□□□□ 0.82
Ddb1Q3U1J4 Prss47-201ENSMUST00000182457 828 ntAPPRIS ALT2 TSL 5 BASIC20.19■□□□□ 0.82
Ddb1Q3U1J4 Gm27359-201ENSMUST00000184153 110 ntBASIC20.19■□□□□ 0.82
Ddb1Q3U1J4 Gm27785-201ENSMUST00000184268 110 ntBASIC20.19■□□□□ 0.82
Ddb1Q3U1J4 Gm27466-201ENSMUST00000184396 110 ntBASIC20.19■□□□□ 0.82
Ddb1Q3U1J4 Gm27703-201ENSMUST00000184836 110 ntBASIC20.19■□□□□ 0.82
Ddb1Q3U1J4 Gm10253-201ENSMUST00000194270 940 ntBASIC20.19■□□□□ 0.82
Ddb1Q3U1J4 Gm29909-201ENSMUST00000214500 922 ntTSL 5 BASIC20.19■□□□□ 0.82
Ddb1Q3U1J4 Grk6-207ENSMUST00000225925 2769 ntBASIC20.19■□□□□ 0.82
Ddb1Q3U1J4 Mesp2-201ENSMUST00000107394 1944 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Ddb1Q3U1J4 Rnpep-202ENSMUST00000077340 2288 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Ddb1Q3U1J4 Gm9821-201ENSMUST00000178895 1953 ntAPPRIS P1 BASIC20.19■□□□□ 0.82
Ddb1Q3U1J4 Rnf181-201ENSMUST00000069580 1434 ntAPPRIS P3 TSL 1 (best) BASIC20.19■□□□□ 0.82
Retrieved 100 of 76,532 protein–RNA pairs in 26.2 ms